pycom10g01180

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000179
Physical Location & Seq
Forward (+)
1260549 .. 1261018
470 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g01180.1

Sequence Viewer

Length: 429 bp
ATGATACGAGGATTTTCTCTCTGCAATCGCCGAGGATTGCCTGCGAGTTGTCGCTGTTTATTTTGGGCATATCACAAGCTTTCCCAAGATGCTCGAGGTAAATCAGGCGTGAAGATTTCTTCATGGATCCGCTTCTGGTATTGGGAGGACATAAGGTACAAGAAGTCCTTGAAGAAAAGAGGTTGCAACAAAACCACTAAGCCAAAGGGAGACCCATATCCGTCTGGTGTTATTGGTTCAGCTAGGCGCCGTTCCCCTGCCGAGTTGAGAGCGTTTGAGGACCTTGGCATAGCATCAGAGCATGTGGAAGAATCTTACCTAGCTGCTTTCTTAGCTTGTTGGCTTTGTAAGTTTGTTTTTCCAACCGGCGACGTCAACTTTGTTCGTTCTAGGGTTTTCAAAGTTGCTAGCAAGATGGCTGCAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

143

Amino Acids

16.18

Weight (kDa)

10.03

Isoelectric Point (pI)

59.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 375
AccB1I GGYRCC 1 cut(s) 246
AciI CCGC 1 cut(s) 130
AclWI GGATC 2 cut(s) 121, 134
AcyI GRCGYC 2 cut(s) 247, 372
AfaI GTAC 1 cut(s) 158
AgsI TTSAA 2 cut(s) 172, 400
AluBI AGCT 4 cut(s) 79, 242, 323, 335
AluI AGCT 4 cut(s) 79, 242, 323, 335
Alw26I GTCTC 1 cut(s) 204
AlwI GGATC 2 cut(s) 121, 134
Ama87I CYCGRG 1 cut(s) 93
ApeKI GCWGC 2 cut(s) 323, 419
ArsI GACNNNNNNTTYG 2 cut(s) 362, 394
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 280
AsuNHI GCTAGC 1 cut(s) 407
AvaI CYCGRG 1 cut(s) 93
AvaII GGWCC 1 cut(s) 280
BamHI GGATCC 1 cut(s) 126
BanI GGYRCC 1 cut(s) 246
BbvI GCAGC 2 cut(s) 310, 406
BccI CCATC 1 cut(s) 409
BceAI ACGGC 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 4 cut(s) 243, 320, 390, 408
BfmI CTRYAG 1 cut(s) 420
BfoI RGCGCY 1 cut(s) 250
BisI GCNGC 2 cut(s) 324, 420
BlsI GCNGC 2 cut(s) 325, 421
Bme18I GGWCC 1 cut(s) 280
BmeT110I CYCGRG 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 2 cut(s) 128, 248
BmsI GCATC 2 cut(s) 79, 302
BmtI GCTAGC 1 cut(s) 411
BsaHI GRCGYC 2 cut(s) 247, 372
BsaI GGTCTC 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 31, 283
Bse118I RCCGGY 1 cut(s) 365
BseDI CCNNGG 2 cut(s) 31, 283
BseXI GCAGC 2 cut(s) 310, 406
BshNI GGYRCC 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 93
BsiSI CCGG 1 cut(s) 366
BsmAI GTCTC 1 cut(s) 204
Bso31I GGTCTC 1 cut(s) 204
BsoBI CYCGRG 1 cut(s) 93
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 1 cut(s) 130
BspLI GGNNCC 2 cut(s) 128, 248
BspMAI CTGCAG 1 cut(s) 424
BspOI GCTAGC 1 cut(s) 411
BspPI GGATC 2 cut(s) 121, 134
BspT107I GGYRCC 1 cut(s) 246
BspTNI GGTCTC 1 cut(s) 204
BsrFI RCCGGY 1 cut(s) 365
BssAI RCCGGY 1 cut(s) 365
BssECI CCNNGG 2 cut(s) 31, 283
BssMI GATC 1 cut(s) 126
BssNI GRCGYC 2 cut(s) 247, 372
BssT1I CCWWGG 1 cut(s) 283
BstACI GRCGYC 2 cut(s) 247, 372
BstC8I GCNNGC 2 cut(s) 42, 409
BstDEI CTNAG 2 cut(s) 198, 331
BstH2I RGCGCY 1 cut(s) 250
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstNSI RCATGY 1 cut(s) 305
BstSFI CTRYAG 1 cut(s) 420
BstV1I GCAGC 2 cut(s) 310, 406
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
Cac8I GCNNGC 2 cut(s) 42, 409
CfoI GCGC 1 cut(s) 249
Cfr10I RCCGGY 1 cut(s) 365
Cfr13I GGNCC 1 cut(s) 280
Csp6I GTAC 1 cut(s) 157
CviAII CATG 2 cut(s) 123, 302
CviJI RGCY 7 cut(s) 79, 202, 242, 323, 335, 343, 419
CviKI_1 RGCY 7 cut(s) 79, 202, 242, 323, 335, 343, 419
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 2 cut(s) 198, 331
DinI GGCGCC 1 cut(s) 248
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 283
Eco31I GGTCTC 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 280
Eco88I CYCGRG 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 283
EgeI GGCGCC 1 cut(s) 248
EheI GGCGCC 1 cut(s) 248
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 2 cut(s) 126, 305
FaiI YATR 6 cut(s) 70, 124, 152, 217, 290, 303
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 2 cut(s) 122, 301
Fnu4HI GCNGC 2 cut(s) 324, 420
Fsp4HI GCNGC 2 cut(s) 324, 420
FspBI CTAG 4 cut(s) 243, 320, 390, 408
GlaI GCGC 1 cut(s) 248
GluI GCNGC 2 cut(s) 324, 420
HaeII RGCGCY 1 cut(s) 250
HapII CCGG 1 cut(s) 366
HhaI GCGC 1 cut(s) 249
Hin1I GRCGYC 2 cut(s) 247, 372
Hin1II CATG 2 cut(s) 126, 305
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 1 cut(s) 311
HpaII CCGG 1 cut(s) 366
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 1 cut(s) 298
Hpy8I GTNNAC 1 cut(s) 376
Hpy99I CGWCG 1 cut(s) 374
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 3 cut(s) 24, 186, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpyF3I CTNAG 2 cut(s) 198, 331
HpySE526I ACGT 1 cut(s) 372
Hsp92I GRCGYC 2 cut(s) 247, 372
Hsp92II CATG 2 cut(s) 126, 305
HspAI GCGC 1 cut(s) 247
KasI GGCGCC 1 cut(s) 246
Kzo9I GATC 1 cut(s) 126
LpnPI CCDG 7 cut(s) 54, 90, 121, 210, 270, 379, 408
Lsp1109I GCAGC 2 cut(s) 310, 406
LweI GCATC 2 cut(s) 79, 302
MaeI CTAG 4 cut(s) 243, 320, 390, 408
MaeII ACGT 1 cut(s) 372
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 4 cut(s) 111, 124, 184, 320
MflI RGATCY 1 cut(s) 126
Mly113I GGCGCC 1 cut(s) 247
MmeI TCCRAC 1 cut(s) 386
MnlI CCTC 5 cut(s) 26, 89, 139, 173, 271
MspI CCGG 1 cut(s) 366
MwoI GCNNNNNNNGC 1 cut(s) 332
NarI GGCGCC 1 cut(s) 247
NdeII GATC 1 cut(s) 126
NheI GCTAGC 1 cut(s) 407
NlaIII CATG 2 cut(s) 126, 305
NlaIV GGNNCC 2 cut(s) 128, 248
NmeAIII GCCGAG 2 cut(s) 56, 286
NspI RCATGY 1 cut(s) 305
PaeR7I CTCGAG 1 cut(s) 93
PfeI GAWTC 1 cut(s) 311
PkrI GCNGC 2 cut(s) 325, 421
PluTI GGCGCC 1 cut(s) 250
PpuMI RGGWCCY 1 cut(s) 280
Psp5II RGGWCCY 1 cut(s) 280
PspN4I GGNNCC 2 cut(s) 128, 248
PspPI GGNCC 1 cut(s) 280
PspPPI RGGWCCY 1 cut(s) 280
PspXI VCTCGAGB 1 cut(s) 93
PstI CTGCAG 1 cut(s) 424
PsuI RGATCY 1 cut(s) 126
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SatI GCNGC 2 cut(s) 324, 420
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 1 cut(s) 280
SfaNI GCATC 2 cut(s) 79, 302
SfcI CTRYAG 1 cut(s) 420
SfoI GGCGCC 1 cut(s) 248
Sfr274I CTCGAG 1 cut(s) 93
SinI GGWCC 1 cut(s) 280
SlaI CTCGAG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
SsiI CCGC 1 cut(s) 130
SspDI GGCGCC 1 cut(s) 246
SspMI CTAG 4 cut(s) 243, 320, 390, 408
StyI CCWWGG 1 cut(s) 283
TaiI ACGT 1 cut(s) 375
TaqI TCGA 1 cut(s) 94
TfiI GAWTC 1 cut(s) 311
TseI GCWGC 2 cut(s) 323, 419
TspDTI ATGAA 1 cut(s) 111
TspGWI ACGGA 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 280
XceI RCATGY 1 cut(s) 305
XhoI CTCGAG 1 cut(s) 93
XspI CTAG 4 cut(s) 243, 320, 390, 408
ZraI GACGTC 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.