pycom13g26160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000179
Physical Location & Seq
Forward (+)
22893759 .. 22894870
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g26160.5

Sequence Viewer

Length: 681 bp
ATGCCAAAGCTAGAATTCGCCTCAACTCTAGTCTTCACAGATATCACTCAAATTTTCACTCAGTTCCTAAGGTGTAGTCTTTCCACAAACACATATGAAATACTAAGAATATGGATAGCACATGTACTTACCAGCACCTATGAATACATCCCCAAAGATCAGCTGGGTTTTTCACAAGGTTGTAATGCAGGGCTTAGGCTATGGAAGCAGGCTTTTCACTTGAATTGGCCTTTGTTATTTGTTCTTGGTGTCCATGACCCATGCATGATAATGGGAAGATTTGGGAATTGCATCTTCTTTGATTTTTTTTCTGTAACTTTTATTTATTTTTTTATTTGCAATTCCAGCACATGTTACCTCAGTCTTCATTACTTTAGTATTCCCCAAACTATAAGGTATGGCTTTAATGGGCTAAAAGTGTTTGGCTGCAACAAGGGTGAATGGAGCACACAAAGGGATGGGAATAAGGTGATAATAAACACATGGTATCTGCAACATAGGATTATTCTTGAAAAAGATAGGAATAGAAACACTTTAAACCTTCTCAAAGAATCTTCTTCCAGAATTTGCGCATGGTACTTTAACCATCATAATTCCAAGAGTAACAACTTTGTAAAAGAAAATAAGATACGAAACTTTTTCATGTCAACACTGTACAAAAGCAAACTTAATCAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

26.71

Weight (kDa)

9.37

Isoelectric Point (pI)

23.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 571
AcsI RAATTY 3 cut(s) 14, 51, 564
AfaI GTAC 3 cut(s) 126, 578, 656
AflIII ACRYGT 2 cut(s) 121, 350
AgsI TTSAA 2 cut(s) 223, 512
AluBI AGCT 2 cut(s) 10, 163
AluI AGCT 2 cut(s) 10, 163
Alw21I GWGCWC 1 cut(s) 449
AoxI GGCC 1 cut(s) 227
ApeKI GCWGC 1 cut(s) 426
ApoI RAATTY 3 cut(s) 14, 51, 564
AspLEI GCGC 1 cut(s) 572
AsuHPI GGTGA 2 cut(s) 449, 481
AxyI CCTNAGG 1 cut(s) 68
BbsI GAAGAC 2 cut(s) 25, 356
Bbv12I GWGCWC 1 cut(s) 449
BbvI GCAGC 1 cut(s) 413
BccI CCATC 2 cut(s) 452, 594
BfaI CTAG 2 cut(s) 11, 29
BisI GCNGC 1 cut(s) 427
BlsI GCNGC 1 cut(s) 428
BmsI GCATC 1 cut(s) 300
BpiI GAAGAC 2 cut(s) 25, 356
Bpu10I CCTNAGC 1 cut(s) 194
Bse21I CCTNAGG 1 cut(s) 68
BseGI GGATG 2 cut(s) 147, 463
BseMII CTCAG 2 cut(s) 74, 373
BseXI GCAGC 1 cut(s) 413
BseYI CCCAGC 1 cut(s) 163
BshFI GGCC 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 449
BsnI GGCC 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 449
Bsp1407I TGTACA 1 cut(s) 654
Bsp143I GATC 1 cut(s) 157
BspANI GGCC 1 cut(s) 229
BspCNI CTCAG 2 cut(s) 73, 372
BsrGI TGTACA 1 cut(s) 654
BssMI GATC 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 654
BstAUI TGTACA 1 cut(s) 654
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 5 cut(s) 60, 68, 104, 194, 359
BstF5I GGATG 2 cut(s) 147, 463
BstHHI GCGC 1 cut(s) 572
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 205, 345
BstNSI RCATGY 2 cut(s) 125, 354
BstV1I GCAGC 1 cut(s) 413
BstV2I GAAGAC 2 cut(s) 25, 356
Bsu36I CCTNAGG 1 cut(s) 68
BsuRI GGCC 1 cut(s) 229
BtsCI GGATG 2 cut(s) 147, 463
BtsIMutI CAGTG 1 cut(s) 650
Cac8I GCNNGC 1 cut(s) 210
CfoI GCGC 1 cut(s) 572
Csp6I GTAC 3 cut(s) 125, 577, 655
CviAII CATG 8 cut(s) 122, 254, 261, 265, 351, 483, 573, 643
CviJI RGCY 9 cut(s) 10, 163, 193, 199, 212, 229, 402, 412, 426
CviKI_1 RGCY 9 cut(s) 10, 163, 193, 199, 212, 229, 402, 412, 426
CviQI GTAC 3 cut(s) 125, 577, 655
DdeI CTNAG 5 cut(s) 60, 68, 104, 194, 359
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
DraI TTTAAA 1 cut(s) 537
Eco32I GATATC 1 cut(s) 43
Eco81I CCTNAGG 1 cut(s) 68
EcoRI GAATTC 1 cut(s) 14
EcoRV GATATC 1 cut(s) 43
EcoT22I ATGCAT 1 cut(s) 266
FaeI CATG 8 cut(s) 125, 257, 264, 268, 354, 486, 576, 646
FatI CATG 8 cut(s) 121, 253, 260, 264, 350, 482, 572, 642
FauNDI CATATG 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 427
FokI GGATG 2 cut(s) 134, 470
Fsp4HI GCNGC 1 cut(s) 427
FspBI CTAG 2 cut(s) 11, 29
FspI TGCGCA 1 cut(s) 571
GlaI GCGC 1 cut(s) 571
GluI GCNGC 1 cut(s) 427
GsaI CCCAGC 1 cut(s) 167
HaeIII GGCC 1 cut(s) 229
HhaI GCGC 1 cut(s) 572
Hin1II CATG 8 cut(s) 125, 257, 264, 268, 354, 486, 576, 646
Hin6I GCGC 1 cut(s) 570
HinP1I GCGC 1 cut(s) 570
HincII GTYRAC 1 cut(s) 648
HindII GTYRAC 1 cut(s) 648
HinfI GANTC 1 cut(s) 551
HphI GGTGA 2 cut(s) 449, 481
Hpy166II GTNNAC 1 cut(s) 648
Hpy188III TCNNGA 2 cut(s) 509, 561
Hpy8I GTNNAC 1 cut(s) 648
HpyAV CCTTC 1 cut(s) 551
HpyCH4III ACNGT 1 cut(s) 654
HpyCH4V TGCA 6 cut(s) 188, 264, 291, 339, 429, 493
HpyF10VI GCNNNNNNNGC 2 cut(s) 205, 345
HpyF3I CTNAG 5 cut(s) 60, 68, 104, 194, 359
Hsp92II CATG 8 cut(s) 125, 257, 264, 268, 354, 486, 576, 646
HspAI GCGC 1 cut(s) 570
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 444
LpnPI CCDG 6 cut(s) 145, 149, 174, 194, 358, 574
Lsp1109I GCAGC 1 cut(s) 413
LweI GCATC 1 cut(s) 300
MaeI CTAG 2 cut(s) 11, 29
MaeIII GTNAC 3 cut(s) 313, 353, 602
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 6 cut(s) 25, 286, 288, 356, 546, 549
MhlI GDGCHC 1 cut(s) 449
MluCI AATT 7 cut(s) 14, 51, 223, 286, 340, 564, 592
MnlI CCTC 2 cut(s) 31, 368
Mph1103I ATGCAT 1 cut(s) 266
MseI TTAA 4 cut(s) 405, 536, 582, 669
MslI CAYNNNNRTG 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 163
MwoI GCNNNNNNNGC 2 cut(s) 205, 345
NdeI CATATG 1 cut(s) 94
NdeII GATC 1 cut(s) 157
NlaIII CATG 8 cut(s) 125, 257, 264, 268, 354, 486, 576, 646
NsbI TGCGCA 1 cut(s) 571
NsiI ATGCAT 1 cut(s) 266
NspI RCATGY 2 cut(s) 125, 354
PciI ACATGT 2 cut(s) 121, 350
PfeI GAWTC 1 cut(s) 551
PkrI GCNGC 1 cut(s) 428
PscI ACATGT 2 cut(s) 121, 350
PspFI CCCAGC 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 163
RsaI GTAC 3 cut(s) 126, 578, 656
RsaNI GTAC 3 cut(s) 125, 577, 655
RseI CAYNNNNRTG 1 cut(s) 269
SaqAI TTAA 4 cut(s) 405, 536, 582, 669
SatI GCNGC 1 cut(s) 427
Sau3AI GATC 1 cut(s) 157
SduI GDGCHC 1 cut(s) 449
SetI ASST 9 cut(s) 12, 74, 140, 165, 181, 360, 398, 471, 543
SfaNI GCATC 1 cut(s) 300
SmiMI CAYNNNNRTG 1 cut(s) 269
Sse9I AATT 7 cut(s) 14, 51, 223, 286, 340, 564, 592
SspMI CTAG 2 cut(s) 11, 29
TaaI ACNGT 1 cut(s) 654
TasI AATT 7 cut(s) 14, 51, 223, 286, 340, 564, 592
TatI WGTACW 2 cut(s) 124, 654
TfiI GAWTC 1 cut(s) 551
Tru1I TTAA 4 cut(s) 405, 536, 582, 669
Tru9I TTAA 4 cut(s) 405, 536, 582, 669
TscAI CASTG 1 cut(s) 657
TseI GCWGC 1 cut(s) 426
TspDTI ATGAA 4 cut(s) 111, 156, 356, 631
TspRI CASTG 1 cut(s) 657
XapI RAATTY 3 cut(s) 14, 51, 564
XceI RCATGY 2 cut(s) 125, 354
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XspI CTAG 2 cut(s) 11, 29
Zsp2I ATGCAT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.