Rmu_sc0028789.1_g000001

Galactose oxidase, central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028789.1
OG0000179
Physical Location & Seq
Forward (+)
29 .. 1033
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028789.1_g000001.1.cds

Sequence Viewer

Length: 627 bp
atgaatactgactttcttggtgacatttcaacttcttcgcaaccgatgctgcagcgaaatgagggtgcagagattgatggtcgttcactttggggaaacgatgacgcctctttagaccctatacgtgttccttctgcagcggaacttgaggcttacgctttacccacggaaggaaaatccaatgcaacgaatgactcacagcaaattgaccctacaggtccacttaccatggtgcatcctcctaagcctctgaacaccatagccttttctgaggcctctcttggtggagctgctattatagatgccagccaaagacttcgtgatattcgtcaacaagctgctactgcagtttgtgaacaaattgaagacatgataatgaagcactcctccaagaccattctttctagcaagggggagcttgacaagctgacagctgagcttagccactatgggattgatccttcatccgtaaggggaaaagagaagaagcttgtcgacctagaaaaagagaatgctcaaatccaagagacccccgaggtgaccactgcagagcttaagacgacaaaatcattacgagatacttttgagaaccaccgcaatagcttcaagggtttgacttgggtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04212 ko05168 map04212 map05168
Pfam Domains
Protein Families
Kelch_3 Kelch_4 Kelch_5

Protein Analysis

208

Amino Acids

22.72

Weight (kDa)

4.9

Isoelectric Point (pI)

33.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 495
AciI CCGC 2 cut(s) 140, 595
AclWI GGATC 1 cut(s) 452
AcyI GRCGYC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 170
AflII CTTAAG 1 cut(s) 554
AflIII ACRYGT 1 cut(s) 124
AgsI TTSAA 3 cut(s) 30, 365, 607
AluBI AGCT 9 cut(s) 290, 338, 418, 427, 434, 439, 490, 553, 603
AluI AGCT 9 cut(s) 290, 338, 418, 427, 434, 439, 490, 553, 603
Alw26I GTCTC 1 cut(s) 521
AlwI GGATC 1 cut(s) 452
Ama87I CYCGRG 1 cut(s) 533
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 5 cut(s) 49, 52, 137, 290, 338
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 2 cut(s) 32, 550
AvaI CYCGRG 1 cut(s) 533
AvaII GGWCC 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 372
BbvI GCAGC 5 cut(s) 36, 64, 149, 277, 325
BccI CCATC 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 521
BfaI CTAG 2 cut(s) 405, 500
BfmI CTRYAG 5 cut(s) 50, 135, 213, 345, 546
BfrI CTTAAG 1 cut(s) 554
BisI GCNGC 5 cut(s) 50, 53, 138, 291, 339
BlpI GCTNAGC 2 cut(s) 435, 440
BlsI GCNGC 5 cut(s) 51, 54, 139, 292, 340
Bme18I GGWCC 1 cut(s) 218
BmeT110I CYCGRG 1 cut(s) 533
BmgT120I GGNCC 1 cut(s) 218
BmsI GCATC 3 cut(s) 36, 244, 292
BpiI GAAGAC 1 cut(s) 372
Bpu10I CCTNAGC 1 cut(s) 243
Bpu1102I GCTNAGC 2 cut(s) 435, 440
BpuEI CTTGAG 1 cut(s) 167
BsaAI YACGTR 1 cut(s) 125
BsaHI GRCGYC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 521
BsaJI CCNNGG 3 cut(s) 165, 228, 534
Bsc4I CCNNNNNNNGG 1 cut(s) 170
BseDI CCNNGG 3 cut(s) 165, 228, 534
BseGI GGATG 2 cut(s) 235, 464
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 2 cut(s) 261, 426
BseRI GAGGAG 1 cut(s) 376
BseXI GCAGC 5 cut(s) 36, 64, 149, 277, 325
BsgI GTGCAG 1 cut(s) 87
BshFI GGCC 1 cut(s) 275
BsiHKCI CYCGRG 1 cut(s) 533
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 521
BsmI GAATGC 1 cut(s) 517
BsnI GGCC 1 cut(s) 275
Bso31I GGTCTC 1 cut(s) 521
BsoBI CYCGRG 1 cut(s) 533
Bsp143I GATC 1 cut(s) 457
Bsp1720I GCTNAGC 2 cut(s) 435, 440
Bsp19I CCATGG 1 cut(s) 228
BspACI CCGC 2 cut(s) 140, 595
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 2 cut(s) 262, 427
BspMAI CTGCAG 4 cut(s) 54, 139, 349, 550
BspPI GGATC 1 cut(s) 452
BspTI CTTAAG 1 cut(s) 554
BspTNI GGTCTC 1 cut(s) 521
BssECI CCNNGG 3 cut(s) 165, 228, 534
BssMI GATC 1 cut(s) 457
BssNI GRCGYC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 105
BstAFI CTTAAG 1 cut(s) 554
BstAPI GCANNNNNTGC 1 cut(s) 46
BstBAI YACGTR 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 4 cut(s) 243, 270, 435, 440
BstDSI CCRYGG 2 cut(s) 165, 228
BstEII GGTNACC 1 cut(s) 538
BstF5I GGATG 2 cut(s) 235, 464
BstKTI GATC 1 cut(s) 460
BstMAI GTCTC 1 cut(s) 521
BstMBI GATC 1 cut(s) 457
BstMWI GCNNNNNNNGC 3 cut(s) 46, 344, 424
BstPI GGTNACC 1 cut(s) 538
BstSFI CTRYAG 5 cut(s) 50, 135, 213, 345, 546
BstV1I GCAGC 5 cut(s) 36, 64, 149, 277, 325
BstV2I GAAGAC 1 cut(s) 372
BsuRI GGCC 1 cut(s) 275
BtgI CCRYGG 2 cut(s) 165, 228
BtsCI GGATG 2 cut(s) 235, 464
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 1 cut(s) 543
Cac8I GCNNGC 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 218
CseI GACGC 1 cut(s) 113
CviAII CATG 2 cut(s) 229, 370
DdeI CTNAG 4 cut(s) 243, 270, 435, 440
DpnI GATC 1 cut(s) 459
DpnII GATC 1 cut(s) 457
Eco130I CCWWGG 1 cut(s) 228
Eco147I AGGCCT 1 cut(s) 275
Eco31I GGTCTC 1 cut(s) 521
Eco47I GGWCC 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 533
Eco91I GGTNACC 1 cut(s) 538
EcoO65I GGTNACC 1 cut(s) 538
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 2 cut(s) 232, 373
FaiI YATR 6 cut(s) 122, 230, 260, 299, 371, 450
FatI CATG 2 cut(s) 228, 369
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 5 cut(s) 50, 53, 138, 291, 339
FokI GGATG 2 cut(s) 222, 451
Fsp4HI GCNGC 5 cut(s) 50, 53, 138, 291, 339
FspBI CTAG 2 cut(s) 405, 500
GluI GCNGC 5 cut(s) 50, 53, 138, 291, 339
HaeIII GGCC 1 cut(s) 275
HgaI GACGC 1 cut(s) 113
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 2 cut(s) 232, 373
HincII GTYRAC 2 cut(s) 332, 496
HindII GTYRAC 2 cut(s) 332, 496
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 1 cut(s) 194
HphI GGTGA 2 cut(s) 32, 550
Hpy166II GTNNAC 5 cut(s) 86, 221, 332, 356, 496
Hpy188I TCNGA 2 cut(s) 252, 271
Hpy188III TCNNGA 1 cut(s) 320
Hpy8I GTNNAC 5 cut(s) 86, 221, 332, 356, 496
HpyAV CCTTC 3 cut(s) 141, 164, 471
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 7 cut(s) 52, 68, 137, 185, 235, 347, 548
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 344, 424
HpyF3I CTNAG 4 cut(s) 243, 270, 435, 440
HpySE526I ACGT 1 cut(s) 124
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 2 cut(s) 232, 373
Kzo9I GATC 1 cut(s) 457
LmnI GCTCC 2 cut(s) 287, 415
LpnPI CCDG 2 cut(s) 201, 319
Lsp1109I GCAGC 5 cut(s) 36, 64, 149, 277, 325
LweI GCATC 3 cut(s) 36, 244, 292
MaeI CTAG 2 cut(s) 405, 500
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 2 cut(s) 20, 538
MalI GATC 1 cut(s) 459
MboI GATC 1 cut(s) 457
MboII GAAGA 3 cut(s) 27, 377, 496
MluCI AATT 2 cut(s) 204, 360
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 9 cut(s) 55, 118, 142, 249, 258, 265, 286, 397, 529
MseI TTAA 1 cut(s) 555
MslI CAYNNNNRTG 1 cut(s) 374
MspA1I CMGCKG 2 cut(s) 140, 434
MspCI CTTAAG 1 cut(s) 554
Mva1269I GAATGC 1 cut(s) 517
MwoI GCNNNNNNNGC 3 cut(s) 46, 344, 424
NcoI CCATGG 1 cut(s) 228
NdeII GATC 1 cut(s) 457
NlaIII CATG 2 cut(s) 232, 373
NmuCI GTSAC 2 cut(s) 20, 538
PceI AGGCCT 1 cut(s) 275
PcsI WCGNNNNNNNCGW 1 cut(s) 325
PctI GAATGC 1 cut(s) 517
PkrI GCNGC 5 cut(s) 51, 54, 139, 292, 340
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Ppu21I YACGTR 1 cut(s) 125
PspEI GGTNACC 1 cut(s) 538
PspPI GGNCC 1 cut(s) 218
PstI CTGCAG 4 cut(s) 54, 139, 349, 550
PvuII CAGCTG 1 cut(s) 434
RseI CAYNNNNRTG 1 cut(s) 374
SalI GTCGAC 1 cut(s) 494
SaqAI TTAA 1 cut(s) 555
SatI GCNGC 5 cut(s) 50, 53, 138, 291, 339
Sau3AI GATC 1 cut(s) 457
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 1 cut(s) 188
SfaNI GCATC 3 cut(s) 36, 244, 292
SfcI CTRYAG 5 cut(s) 50, 135, 213, 345, 546
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 374
SmlI CTYRAG 2 cut(s) 146, 554
SmoI CTYRAG 2 cut(s) 146, 554
Sse9I AATT 2 cut(s) 204, 360
SseBI AGGCCT 1 cut(s) 275
SsiI CCGC 2 cut(s) 140, 595
SspMI CTAG 2 cut(s) 405, 500
StuI AGGCCT 1 cut(s) 275
StyI CCWWGG 1 cut(s) 228
TaiI ACGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 495
TasI AATT 2 cut(s) 204, 360
Tru1I TTAA 1 cut(s) 555
Tru9I TTAA 1 cut(s) 555
TscAI CASTG 1 cut(s) 550
TseFI GTSAC 2 cut(s) 20, 538
TseI GCWGC 5 cut(s) 49, 52, 137, 290, 338
Tsp45I GTSAC 2 cut(s) 20, 538
TspDTI ATGAA 3 cut(s) 17, 392, 453
TspGWI ACGGA 2 cut(s) 182, 457
TspRI CASTG 1 cut(s) 550
Vha464I CTTAAG 1 cut(s) 554
VpaK11BI GGWCC 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 495
XspI CTAG 2 cut(s) 405, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.