Rmu_ssc0000259.1_g000062

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000259.1
OG0000179
Physical Location & Seq
Reverse (-)
256134 .. 257237
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000259.1_g000062.1.cds

Sequence Viewer

Length: 897 bp
atgaccgtgttacacctgtcatacgggctttctgcaagcactggtgccctacgacgaataccttccacacttctatcggggaaatgtccacctccctgtgggatttggaccaacttggaggcttgcccattgccggacgattttatgatgaggttgttccagctgttgaagagctttctgcaacaagcaaaggaaggagctttgcgttataagaggcctccaaacagaagcaccaggaacaaaagagatccacccccgaatgtgtttaatccatctggcaggatccatgagatccgacaacgtacttttgcaaaactcgcagtatttgatggcttaggcattgagagtaaagatgtagatcccacctacttggctacctttcttgcttgttggttgtgtctgtttgttttacccatagacgacactagtttgatttgtccgggagtattcaaagttgccaacaaaatgtcacaaggtgtaccgtttttcttagcggtaccagtcctagccaacatctatcagggtttgaatgagatttctgtttccagtgatctaggtaattgctcgaccactcttccttttcattatatatatgcttggctaccagagtacttgggcacccattttcaatctccacttcccaatgacctaaggccccgtatggttcgctttttcggagaattttcaactaagcattttggggacttacaagctctttctttgttcaacacatgtgacaatgtgaggatggatgcatttgccagggataaccgacgagttattcagccatacagtccacatcggttcagtcgacagtttggttacgtgcaagacattcctgccagccttaagaatgacattcgcaccaatgtactgactctgacttataagcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

298

Amino Acids

33.78

Weight (kDa)

9.3

Isoelectric Point (pI)

55.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 210, 888
Acc65I GGTACC 1 cut(s) 496
AccB1I GGYRCC 3 cut(s) 44, 496, 617
AccI GTMKAC 1 cut(s) 811
AciI CCGC 1 cut(s) 494
AclWI GGATC 5 cut(s) 242, 277, 286, 290, 353
AcsI RAATTY 1 cut(s) 680
AdeI CACNNNGTG 1 cut(s) 476
AfaI GTAC 5 cut(s) 304, 480, 498, 611, 873
AfiI CCNNNNNNNGG 2 cut(s) 98, 133
AflII CTTAAG 1 cut(s) 848
AflIII ACRYGT 1 cut(s) 731
AgsI TTSAA 6 cut(s) 169, 451, 529, 629, 687, 727
AhlI ACTAGT 1 cut(s) 425
AjnI CCWGG 2 cut(s) 233, 761
AluBI AGCT 4 cut(s) 163, 174, 200, 713
AluI AGCT 4 cut(s) 163, 174, 200, 713
AlwI GGATC 5 cut(s) 242, 277, 286, 290, 353
AoxI GGCC 2 cut(s) 215, 653
ApoI RAATTY 1 cut(s) 680
Asp700I GAANNNNTTC 1 cut(s) 61
Asp718I GGTACC 1 cut(s) 496
AspS9I GGNCC 2 cut(s) 108, 654
AsuC2I CCSGG 1 cut(s) 441
AvaII GGWCC 1 cut(s) 108
AxyI CCTNAGG 1 cut(s) 650
BaeGI GKGCMC 2 cut(s) 49, 620
BamHI GGATCC 1 cut(s) 282
BanI GGYRCC 3 cut(s) 44, 496, 617
BccI CCATC 3 cut(s) 280, 323, 742
BciT130I CCWGG 2 cut(s) 235, 763
BcnI CCSGG 1 cut(s) 441
BcuI ACTAGT 1 cut(s) 425
BfaI CTAG 3 cut(s) 426, 506, 554
BfrI CTTAAG 1 cut(s) 848
BmcAI AGTACT 1 cut(s) 611
Bme1390I CCNGG 3 cut(s) 235, 441, 763
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 2 cut(s) 108, 654
BmiI GGNNCC 5 cut(s) 46, 284, 498, 619, 656
BmrFI CCNGG 3 cut(s) 235, 441, 763
BmsI GCATC 1 cut(s) 742
Bpu10I CCTNAGC 1 cut(s) 334
BpuMI CCSGG 1 cut(s) 441
BsaAI YACGTR 1 cut(s) 826
BsaBI GATNNNNATC 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 762
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 133
Bse1I ACTGG 3 cut(s) 46, 500, 546
Bse21I CCTNAGG 1 cut(s) 650
Bse3DI GCAATG 1 cut(s) 128
Bse8I GATNNNNATC 1 cut(s) 357
BseBI CCWGG 2 cut(s) 235, 763
BseDI CCNNGG 1 cut(s) 762
BseGI GGATG 2 cut(s) 753, 757
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 2 cut(s) 98, 133
BseMI GCAATG 1 cut(s) 128
BseNI ACTGG 3 cut(s) 46, 500, 546
BseSI GKGCMC 2 cut(s) 49, 620
BshFI GGCC 2 cut(s) 217, 655
BshNI GGYRCC 3 cut(s) 44, 496, 617
BsiSI CCGG 2 cut(s) 134, 440
BslFI GGGAC 1 cut(s) 716
BslI CCNNNNNNNGG 2 cut(s) 98, 133
BsmFI GGGAC 1 cut(s) 716
BsnI GGCC 2 cut(s) 217, 655
Bsp1286I GDGCHC 2 cut(s) 49, 620
Bsp143I GATC 5 cut(s) 247, 282, 291, 358, 550
BspACI CCGC 1 cut(s) 494
BspANI GGCC 2 cut(s) 217, 655
BspLI GGNNCC 5 cut(s) 46, 284, 498, 619, 656
BspPI GGATC 5 cut(s) 242, 277, 286, 290, 353
BspQI GCTCTTC 1 cut(s) 164
BspT107I GGYRCC 3 cut(s) 44, 496, 617
BspTI CTTAAG 1 cut(s) 848
BsrDI GCAATG 1 cut(s) 128
BsrI ACTGG 3 cut(s) 46, 500, 546
BssECI CCNNGG 1 cut(s) 762
BssMI GATC 5 cut(s) 247, 282, 291, 358, 550
Bst2UI CCWGG 2 cut(s) 235, 763
Bst4CI ACNGT 4 cut(s) 7, 483, 794, 816
Bst6I CTCTTC 2 cut(s) 164, 579
BstAFI CTTAAG 1 cut(s) 848
BstBAI YACGTR 1 cut(s) 826
BstC8I GCNNGC 3 cut(s) 37, 124, 844
BstDEI CTNAG 4 cut(s) 334, 490, 650, 690
BstF5I GGATG 2 cut(s) 753, 757
BstKTI GATC 5 cut(s) 250, 285, 294, 361, 553
BstMBI GATC 5 cut(s) 247, 282, 291, 358, 550
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNI CCWGG 2 cut(s) 235, 763
BstNSI RCATGY 1 cut(s) 735
BstSCI CCNGG 3 cut(s) 233, 439, 761
BstSLI GKGCMC 2 cut(s) 49, 620
BstX2I RGATCY 4 cut(s) 247, 282, 291, 358
BstXI CCANNNNNNTGG 1 cut(s) 370
BstYI RGATCY 4 cut(s) 247, 282, 291, 358
Bsu36I CCTNAGG 1 cut(s) 650
BsuRI GGCC 2 cut(s) 217, 655
BtsCI GGATG 2 cut(s) 753, 757
BtsIMutI CAGTG 2 cut(s) 39, 553
Cac8I GCNNGC 3 cut(s) 37, 124, 844
Cfr13I GGNCC 2 cut(s) 108, 654
Csp6I GTAC 5 cut(s) 303, 479, 497, 610, 872
CviAII CATG 2 cut(s) 287, 732
CviQI GTAC 5 cut(s) 303, 479, 497, 610, 872
DdeI CTNAG 4 cut(s) 334, 490, 650, 690
DpnI GATC 5 cut(s) 249, 284, 293, 360, 552
DpnII GATC 5 cut(s) 247, 282, 291, 358, 550
DraIII CACNNNGTG 1 cut(s) 476
Eam1104I CTCTTC 2 cut(s) 164, 579
EarI CTCTTC 2 cut(s) 164, 579
Eco147I AGGCCT 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 108
Eco81I CCTNAGG 1 cut(s) 650
EcoO109I RGGNCCY 1 cut(s) 654
EcoRII CCWGG 2 cut(s) 233, 761
EcoT22I ATGCAT 1 cut(s) 757
FaeI CATG 2 cut(s) 290, 735
FaqI GGGAC 1 cut(s) 716
FatI CATG 2 cut(s) 286, 731
FblI GTMKAC 1 cut(s) 811
FokI GGATG 2 cut(s) 760, 764
FspBI CTAG 3 cut(s) 426, 506, 554
HaeIII GGCC 2 cut(s) 217, 655
HapII CCGG 2 cut(s) 134, 440
Hin1II CATG 2 cut(s) 290, 735
HincII GTYRAC 1 cut(s) 812
HindII GTYRAC 1 cut(s) 812
HinfI GANTC 1 cut(s) 877
HpaII CCGG 2 cut(s) 134, 440
Hpy166II GTNNAC 4 cut(s) 89, 479, 797, 812
Hpy188I TCNGA 3 cut(s) 296, 677, 882
Hpy8I GTNNAC 4 cut(s) 89, 479, 797, 812
Hpy99I CGWCG 2 cut(s) 57, 777
HpyAV CCTTC 2 cut(s) 72, 188
HpyCH4III ACNGT 4 cut(s) 7, 483, 794, 816
HpyCH4IV ACGT 2 cut(s) 301, 825
HpyCH4V TGCA 5 cut(s) 35, 181, 311, 755, 829
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 4 cut(s) 334, 490, 650, 690
HpySE526I ACGT 2 cut(s) 301, 825
Hsp92II CATG 2 cut(s) 290, 735
KpnI GGTACC 1 cut(s) 500
Kzo9I GATC 5 cut(s) 247, 282, 291, 358, 550
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 1 cut(s) 197
LweI GCATC 1 cut(s) 742
MaeI CTAG 3 cut(s) 426, 506, 554
MaeII ACGT 2 cut(s) 301, 825
MaeIII GTNAC 4 cut(s) 9, 468, 734, 821
MalI GATC 5 cut(s) 249, 284, 293, 360, 552
MboI GATC 5 cut(s) 247, 282, 291, 358, 550
MboII GAAGA 2 cut(s) 181, 566
MflI RGATCY 4 cut(s) 247, 282, 291, 358
MhlI GDGCHC 2 cut(s) 49, 620
MluCI AATT 2 cut(s) 559, 680
MlyI GAGTC 1 cut(s) 871
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 6 cut(s) 102, 112, 144, 207, 228, 738
Mph1103I ATGCAT 1 cut(s) 757
MroXI GAANNNNTTC 1 cut(s) 61
MseI TTAA 2 cut(s) 267, 849
MspA1I CMGCKG 1 cut(s) 163
MspCI CTTAAG 1 cut(s) 848
MspI CCGG 2 cut(s) 134, 440
MspR9I CCNGG 3 cut(s) 235, 441, 763
MvaI CCWGG 2 cut(s) 235, 763
MwoI GCNNNNNNNGC 1 cut(s) 317
NciI CCSGG 1 cut(s) 441
NdeII GATC 5 cut(s) 247, 282, 291, 358, 550
NlaIII CATG 2 cut(s) 290, 735
NlaIV GGNNCC 5 cut(s) 46, 284, 498, 619, 656
NmuCI GTSAC 2 cut(s) 468, 734
NsiI ATGCAT 1 cut(s) 757
NspI RCATGY 1 cut(s) 735
PceI AGGCCT 1 cut(s) 217
PciI ACATGT 1 cut(s) 731
PciSI GCTCTTC 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 808
PdmI GAANNNNTTC 1 cut(s) 61
PfoI TCCNGGA 1 cut(s) 439
PleI GAGTC 1 cut(s) 871
PpsI GAGTC 1 cut(s) 871
Ppu21I YACGTR 1 cut(s) 826
PscI ACATGT 1 cut(s) 731
PsiI TTATAA 2 cut(s) 210, 888
Psp6I CCWGG 2 cut(s) 233, 761
PspGI CCWGG 2 cut(s) 233, 761
PspN4I GGNNCC 5 cut(s) 46, 284, 498, 619, 656
PspPI GGNCC 2 cut(s) 108, 654
PsuI RGATCY 4 cut(s) 247, 282, 291, 358
PvuII CAGCTG 1 cut(s) 163
RsaI GTAC 5 cut(s) 304, 480, 498, 611, 873
RsaNI GTAC 5 cut(s) 303, 479, 497, 610, 872
SalI GTCGAC 1 cut(s) 810
SapI GCTCTTC 1 cut(s) 164
SaqAI TTAA 2 cut(s) 267, 849
Sau3AI GATC 5 cut(s) 247, 282, 291, 358, 550
Sau96I GGNCC 2 cut(s) 108, 654
ScaI AGTACT 1 cut(s) 611
SchI GAGTC 1 cut(s) 871
ScrFI CCNGG 3 cut(s) 235, 441, 763
SduI GDGCHC 2 cut(s) 49, 620
SfaNI GCATC 1 cut(s) 742
SinI GGWCC 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 848
SmoI CTYRAG 1 cut(s) 848
SpeI ACTAGT 1 cut(s) 425
Sse9I AATT 2 cut(s) 559, 680
SseBI AGGCCT 1 cut(s) 217
SsiI CCGC 1 cut(s) 494
SspMI CTAG 3 cut(s) 426, 506, 554
StuI AGGCCT 1 cut(s) 217
StyD4I CCNGG 3 cut(s) 233, 439, 761
TaaI ACNGT 4 cut(s) 7, 483, 794, 816
TaiI ACGT 2 cut(s) 304, 828
TaqI TCGA 2 cut(s) 566, 811
TasI AATT 2 cut(s) 559, 680
TatI WGTACW 2 cut(s) 609, 871
Tru1I TTAA 2 cut(s) 267, 849
Tru9I TTAA 2 cut(s) 267, 849
TscAI CASTG 2 cut(s) 46, 553
TseFI GTSAC 2 cut(s) 468, 734
Tsp45I GTSAC 2 cut(s) 468, 734
TspDTI ATGAA 1 cut(s) 572
TspRI CASTG 2 cut(s) 46, 553
Vha464I CTTAAG 1 cut(s) 848
VpaK11BI GGWCC 1 cut(s) 108
XapI RAATTY 1 cut(s) 680
XceI RCATGY 1 cut(s) 735
XmiI GTMKAC 1 cut(s) 811
XmnI GAANNNNTTC 1 cut(s) 61
XspI CTAG 3 cut(s) 426, 506, 554
ZrmI AGTACT 1 cut(s) 611
Zsp2I ATGCAT 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.