Rmu_sc0003008.1_g000051

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003008.1
OG0000179
Physical Location & Seq
Forward (+)
184382 .. 185107
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003008.1_g000051.1.cds

Sequence Viewer

Length: 726 bp
atgatccatgagatccgacaacgtacttctgcagacctcgcagtatttgatgacttaggcattgagagtgaagatgtagagcccacctttttggctgcctttcttgcttgttggttgtgtctgtttgttttacccagagactacactggtttgattcgtccgggagtattcaaagttgccagtaaaatgtcacagggtgtacagttttgcctagcagtaccagtgttggccaacatctatcagggtttaggcgagatttctgttttcagcgatccaggtaactgctcggctgcccttccttttcattatattaatgcatggctagcagagtactttggcacccactttcagtctcctcttcccaacgacctaaggccccgtatggttcgcttctccggagaattttcagctaaatattgtggggactcagaggcgctttctttgttcaatgcatgtgataatgtgaggatggatgcatttgccagggtattttcggagagcagagtgattatcaacctcgagaacatctcccatttagacctcatatatctcatcagccttcaatctgggcattcaaccatacagtccacaccggttcagtcgatagtttggttcactacaacagaaagtctttttagcgaccaagttttttgcgaggaatttattttcctcagtaaatgtcactttttacgaggaatatttatattcctcactaaatatcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

241

Amino Acids

27.23

Weight (kDa)

5.17

Isoelectric Point (pI)

57.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 338
AccIII TCCGGA 1 cut(s) 395
AclWI GGATC 2 cut(s) 7, 266
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 2 cut(s) 401, 659
AdeI CACNNNGTG 1 cut(s) 197
AfaI GTAC 4 cut(s) 25, 201, 219, 332
AgeI ACCGGT 1 cut(s) 592
AgsI TTSAA 4 cut(s) 172, 448, 563, 576
AjnI CCWGG 2 cut(s) 274, 482
AluBI AGCT 1 cut(s) 410
AluI AGCT 1 cut(s) 410
Alw26I GTCTC 2 cut(s) 132, 357
AlwI GGATC 2 cut(s) 7, 266
Ama87I CYCGRG 1 cut(s) 518
Aor13HI TCCGGA 1 cut(s) 395
AoxI GGCC 2 cut(s) 228, 374
ApeKI GCWGC 2 cut(s) 95, 290
ApoI RAATTY 2 cut(s) 401, 659
AseI ATTAAT 1 cut(s) 312
AsiGI ACCGGT 1 cut(s) 592
AspLEI GCGC 1 cut(s) 436
AspS9I GGNCC 1 cut(s) 375
AsuC2I CCSGG 1 cut(s) 162
AsuNHI GCTAGC 1 cut(s) 322
AvaI CYCGRG 1 cut(s) 518
AxyI CCTNAGG 1 cut(s) 371
BalI TGGCCA 1 cut(s) 230
BanI GGYRCC 1 cut(s) 338
BanII GRGCYC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 82, 277
BccI CCATC 1 cut(s) 463
BciT130I CCWGG 2 cut(s) 276, 484
BcnI CCSGG 1 cut(s) 162
BcoDI GTCTC 2 cut(s) 132, 357
BfaI CTAG 2 cut(s) 212, 323
BfmI CTRYAG 1 cut(s) 30
BfoI RGCGCY 1 cut(s) 437
BisI GCNGC 2 cut(s) 96, 291
BlsI GCNGC 2 cut(s) 97, 292
BmcAI AGTACT 1 cut(s) 332
Bme1390I CCNGG 3 cut(s) 162, 276, 484
BmeT110I CYCGRG 1 cut(s) 518
BmgT120I GGNCC 1 cut(s) 375
BmiI GGNNCC 2 cut(s) 340, 377
BmrFI CCNGG 3 cut(s) 162, 276, 484
BmsI GCATC 1 cut(s) 463
BmtI GCTAGC 1 cut(s) 326
BplI GAGNNNNNCTC 2 cut(s) 512, 544
BpuMI CCSGG 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 483
BsaWI WCCGGW 2 cut(s) 395, 592
Bse118I RCCGGY 1 cut(s) 592
Bse1I ACTGG 3 cut(s) 151, 180, 221
Bse21I CCTNAGG 1 cut(s) 371
BseAI TCCGGA 1 cut(s) 395
BseBI CCWGG 2 cut(s) 276, 484
BseDI CCNNGG 1 cut(s) 483
BseGI GGATG 2 cut(s) 474, 478
BseMII CTCAG 2 cut(s) 441, 685
BseNI ACTGG 3 cut(s) 151, 180, 221
BseRI GAGGAG 1 cut(s) 345
BseXI GCAGC 2 cut(s) 82, 277
BshFI GGCC 2 cut(s) 230, 376
BshNI GGYRCC 1 cut(s) 338
BshTI ACCGGT 1 cut(s) 592
BsiHKCI CYCGRG 1 cut(s) 518
BsiSI CCGG 3 cut(s) 161, 396, 593
BslFI GGGAC 1 cut(s) 437
BsmAI GTCTC 2 cut(s) 132, 357
BsmFI GGGAC 1 cut(s) 437
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 2 cut(s) 230, 376
BsoBI CYCGRG 1 cut(s) 518
Bsp1286I GDGCHC 1 cut(s) 84
Bsp13I TCCGGA 1 cut(s) 395
Bsp1407I TGTACA 1 cut(s) 199
Bsp143I GATC 3 cut(s) 3, 12, 271
BspANI GGCC 2 cut(s) 230, 376
BspCNI CTCAG 2 cut(s) 440, 684
BspEI TCCGGA 1 cut(s) 395
BspLI GGNNCC 2 cut(s) 340, 377
BspMAI CTGCAG 1 cut(s) 34
BspOI GCTAGC 1 cut(s) 326
BspPI GGATC 2 cut(s) 7, 266
BspT107I GGYRCC 1 cut(s) 338
BsrFI RCCGGY 1 cut(s) 592
BsrGI TGTACA 1 cut(s) 199
BsrI ACTGG 3 cut(s) 151, 180, 221
BssAI RCCGGY 1 cut(s) 592
BssECI CCNNGG 1 cut(s) 483
BssMI GATC 3 cut(s) 3, 12, 271
Bst2UI CCWGG 2 cut(s) 276, 484
Bst4CI ACNGT 2 cut(s) 204, 585
Bst6I CTCTTC 1 cut(s) 363
BstAUI TGTACA 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 4 cut(s) 55, 371, 427, 671
BstF5I GGATG 2 cut(s) 474, 478
BstH2I RGCGCY 1 cut(s) 437
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 3 cut(s) 6, 15, 274
BstMAI GTCTC 2 cut(s) 132, 357
BstMBI GATC 3 cut(s) 3, 12, 271
BstMWI GCNNNNNNNGC 3 cut(s) 38, 104, 323
BstNI CCWGG 2 cut(s) 276, 484
BstNSI RCATGY 1 cut(s) 456
BstSCI CCNGG 3 cut(s) 160, 274, 482
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 82, 277
BstX2I RGATCY 1 cut(s) 12
BstXI CCANNNNNNTGG 1 cut(s) 91
BstYI RGATCY 1 cut(s) 12
Bsu36I CCTNAGG 1 cut(s) 371
BsuRI GGCC 2 cut(s) 230, 376
BtsCI GGATG 2 cut(s) 474, 478
BtsIMutI CAGTG 2 cut(s) 144, 228
Cac8I GCNNGC 1 cut(s) 324
CfoI GCGC 1 cut(s) 436
Cfr10I RCCGGY 1 cut(s) 592
Cfr13I GGNCC 1 cut(s) 375
Csp6I GTAC 4 cut(s) 24, 200, 218, 331
CspAI ACCGGT 1 cut(s) 592
CviAII CATG 3 cut(s) 8, 318, 453
CviJI RGCY 8 cut(s) 82, 95, 230, 290, 322, 376, 410, 558
CviKI_1 RGCY 8 cut(s) 82, 95, 230, 290, 322, 376, 410, 558
CviQI GTAC 4 cut(s) 24, 200, 218, 331
DdeI CTNAG 4 cut(s) 55, 371, 427, 671
DpnI GATC 3 cut(s) 5, 14, 273
DpnII GATC 3 cut(s) 3, 12, 271
DraIII CACNNNGTG 1 cut(s) 197
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco24I GRGCYC 1 cut(s) 84
Eco81I CCTNAGG 1 cut(s) 371
Eco88I CYCGRG 1 cut(s) 518
EcoO109I RGGNCCY 1 cut(s) 375
EcoRII CCWGG 2 cut(s) 274, 482
EcoT22I ATGCAT 3 cut(s) 319, 454, 478
EcoT38I GRGCYC 1 cut(s) 84
FaeI CATG 3 cut(s) 11, 321, 456
FaiI YATR 9 cut(s) 9, 309, 319, 383, 454, 545, 547, 581, 704
FaqI GGGAC 1 cut(s) 437
FatI CATG 3 cut(s) 7, 317, 452
Fnu4HI GCNGC 2 cut(s) 96, 291
FokI GGATG 2 cut(s) 481, 485
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 2 cut(s) 96, 291
FspBI CTAG 2 cut(s) 212, 323
GlaI GCGC 1 cut(s) 435
GluI GCNGC 2 cut(s) 96, 291
HaeII RGCGCY 1 cut(s) 437
HaeIII GGCC 2 cut(s) 230, 376
HapII CCGG 3 cut(s) 161, 396, 593
HhaI GCGC 1 cut(s) 436
Hin1II CATG 3 cut(s) 11, 321, 456
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HinfI GANTC 2 cut(s) 154, 425
HpaII CCGG 3 cut(s) 161, 396, 593
Hpy166II GTNNAC 3 cut(s) 200, 588, 615
Hpy188I TCNGA 3 cut(s) 17, 430, 496
Hpy188III TCNNGA 2 cut(s) 396, 520
Hpy8I GTNNAC 3 cut(s) 200, 588, 615
HpyAV CCTTC 2 cut(s) 305, 569
HpyCH4III ACNGT 2 cut(s) 204, 585
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 4 cut(s) 32, 317, 452, 476
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 104, 323
HpyF3I CTNAG 4 cut(s) 55, 371, 427, 671
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 3 cut(s) 11, 321, 456
HspAI GCGC 1 cut(s) 434
Kpn2I TCCGGA 1 cut(s) 395
Kzo9I GATC 3 cut(s) 3, 12, 271
Lsp1109I GCAGC 2 cut(s) 82, 277
LweI GCATC 1 cut(s) 463
MaeI CTAG 2 cut(s) 212, 323
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 3 cut(s) 189, 278, 680
MalI GATC 3 cut(s) 5, 14, 273
MboI GATC 3 cut(s) 3, 12, 271
MboII GAAGA 2 cut(s) 83, 350
MflI RGATCY 1 cut(s) 12
MhlI GDGCHC 1 cut(s) 84
MlsI TGGCCA 1 cut(s) 230
MluCI AATT 2 cut(s) 401, 659
MluNI TGGCCA 1 cut(s) 230
MlyI GAGTC 1 cut(s) 419
MmeI TCCRAC 1 cut(s) 40
Mox20I TGGCCA 1 cut(s) 230
Mph1103I ATGCAT 3 cut(s) 319, 454, 478
MroI TCCGGA 1 cut(s) 395
MscI TGGCCA 1 cut(s) 230
MseI TTAA 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 230
MspI CCGG 3 cut(s) 161, 396, 593
MspR9I CCNGG 3 cut(s) 162, 276, 484
Mva1269I GAATGC 1 cut(s) 571
MvaI CCWGG 2 cut(s) 276, 484
MwoI GCNNNNNNNGC 3 cut(s) 38, 104, 323
NciI CCSGG 1 cut(s) 162
NdeII GATC 3 cut(s) 3, 12, 271
NheI GCTAGC 1 cut(s) 322
NlaIII CATG 3 cut(s) 11, 321, 456
NlaIV GGNNCC 2 cut(s) 340, 377
NmeAIII GCCGAG 1 cut(s) 266
NmuCI GTSAC 2 cut(s) 189, 680
NsiI ATGCAT 3 cut(s) 319, 454, 478
NspI RCATGY 1 cut(s) 456
PaeR7I CTCGAG 1 cut(s) 518
PctI GAATGC 1 cut(s) 571
PfeI GAWTC 1 cut(s) 154
PfoI TCCNGGA 1 cut(s) 160
PinAI ACCGGT 1 cut(s) 592
PkrI GCNGC 2 cut(s) 97, 292
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
PshBI ATTAAT 1 cut(s) 312
Psp6I CCWGG 2 cut(s) 274, 482
PspGI CCWGG 2 cut(s) 274, 482
PspN4I GGNNCC 2 cut(s) 340, 377
PspPI GGNCC 1 cut(s) 375
PstI CTGCAG 1 cut(s) 34
PsuI RGATCY 1 cut(s) 12
RsaI GTAC 4 cut(s) 25, 201, 219, 332
RsaNI GTAC 4 cut(s) 24, 200, 218, 331
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 2 cut(s) 96, 291
Sau3AI GATC 3 cut(s) 3, 12, 271
Sau96I GGNCC 1 cut(s) 375
ScaI AGTACT 1 cut(s) 332
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 3 cut(s) 162, 276, 484
SduI GDGCHC 1 cut(s) 84
SetI ASST 8 cut(s) 25, 39, 89, 280, 372, 412, 519, 543
SfaNI GCATC 1 cut(s) 463
SfcI CTRYAG 1 cut(s) 30
Sfr274I CTCGAG 1 cut(s) 518
SlaI CTCGAG 1 cut(s) 518
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 2 cut(s) 401, 659
SspI AATATT 2 cut(s) 416, 699
SspMI CTAG 2 cut(s) 212, 323
StyD4I CCNGG 3 cut(s) 160, 274, 482
TaaI ACNGT 2 cut(s) 204, 585
TaiI ACGT 1 cut(s) 25
TaqI TCGA 2 cut(s) 519, 602
TasI AATT 2 cut(s) 401, 659
TatI WGTACW 2 cut(s) 199, 330
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 2 cut(s) 151, 228
TseFI GTSAC 2 cut(s) 189, 680
TseI GCWGC 2 cut(s) 95, 290
Tsp45I GTSAC 2 cut(s) 189, 680
TspDTI ATGAA 1 cut(s) 293
TspRI CASTG 2 cut(s) 151, 228
VspI ATTAAT 1 cut(s) 312
XapI RAATTY 2 cut(s) 401, 659
XceI RCATGY 1 cut(s) 456
XhoI CTCGAG 1 cut(s) 518
XspI CTAG 2 cut(s) 212, 323
ZrmI AGTACT 1 cut(s) 332
Zsp2I ATGCAT 3 cut(s) 319, 454, 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.