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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 375 |
| AclWI | GGATC | 1 cut(s) | 83 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 42 |
| AflIII | ACRYGT | 1 cut(s) | 188 |
| AgsI | TTSAA | 2 cut(s) | 240, 280 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 214 |
| AhlI | ACTAGT | 1 cut(s) | 128 |
| AluBI | AGCT | 6 cut(s) | 58, 65, 70, 251, 370, 433 |
| AluI | AGCT | 6 cut(s) | 58, 65, 70, 251, 370, 433 |
| Alw26I | GTCTC | 3 cut(s) | 340, 401, 431 |
| AlwI | GGATC | 1 cut(s) | 83 |
| Ama87I | CYCGRG | 1 cut(s) | 413 |
| AspS9I | GGNCC | 1 cut(s) | 24 |
| AsuHPI | GGTGA | 1 cut(s) | 430 |
| AvaI | CYCGRG | 1 cut(s) | 413 |
| AvaII | GGWCC | 1 cut(s) | 24 |
| BbsI | GAAGAC | 1 cut(s) | 398 |
| BclI | TGATCA | 1 cut(s) | 259 |
| BcoDI | GTCTC | 3 cut(s) | 340, 401, 431 |
| BcuI | ACTAGT | 1 cut(s) | 128 |
| BfaI | CTAG | 4 cut(s) | 129, 182, 338, 380 |
| BfmI | CTRYAG | 1 cut(s) | 426 |
| BlpI | GCTNAGC | 1 cut(s) | 66 |
| Bme18I | GGWCC | 1 cut(s) | 24 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 214 |
| BmeT110I | CYCGRG | 1 cut(s) | 413 |
| BmgT120I | GGNCC | 1 cut(s) | 24 |
| BpiI | GAAGAC | 1 cut(s) | 398 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 66 |
| BpuEI | CTTGAG | 2 cut(s) | 4, 455 |
| BsaAI | YACGTR | 1 cut(s) | 191 |
| BsaI | GGTCTC | 1 cut(s) | 401 |
| BsaJI | CCNNGG | 1 cut(s) | 414 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 42 |
| BseDI | CCNNGG | 1 cut(s) | 414 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 42 |
| BseMII | CTCAG | 1 cut(s) | 57 |
| BseRI | GAGGAG | 2 cut(s) | 7, 317 |
| BsiHKCI | CYCGRG | 1 cut(s) | 413 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 42 |
| BsmAI | GTCTC | 3 cut(s) | 340, 401, 431 |
| BsmBI | CGTCTC | 1 cut(s) | 431 |
| BsmI | GAATGC | 1 cut(s) | 275 |
| Bso31I | GGTCTC | 1 cut(s) | 401 |
| BsoBI | CYCGRG | 1 cut(s) | 413 |
| Bsp143I | GATC | 2 cut(s) | 88, 259 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 66 |
| BspCNI | CTCAG | 1 cut(s) | 58 |
| BspMAI | CTGCAG | 1 cut(s) | 430 |
| BspPI | GGATC | 1 cut(s) | 83 |
| BspTNI | GGTCTC | 1 cut(s) | 401 |
| BssECI | CCNNGG | 1 cut(s) | 414 |
| BssMI | GATC | 2 cut(s) | 88, 259 |
| Bst4CI | ACNGT | 1 cut(s) | 328 |
| BstBAI | YACGTR | 1 cut(s) | 191 |
| BstDEI | CTNAG | 2 cut(s) | 66, 71 |
| BstEII | GGTNACC | 1 cut(s) | 418 |
| BstKTI | GATC | 2 cut(s) | 91, 262 |
| BstMAI | GTCTC | 3 cut(s) | 340, 401, 431 |
| BstMBI | GATC | 2 cut(s) | 88, 259 |
| BstPI | GGTNACC | 1 cut(s) | 418 |
| BstSFI | CTRYAG | 1 cut(s) | 426 |
| BstV2I | GAAGAC | 1 cut(s) | 398 |
| BtgZI | GCGATG | 1 cut(s) | 248 |
| BtsI | GCAGTG | 1 cut(s) | 423 |
| BtsIMutI | CAGTG | 2 cut(s) | 333, 423 |
| Cfr13I | GGNCC | 1 cut(s) | 24 |
| CviJI | RGCY | 8 cut(s) | 58, 65, 70, 176, 206, 251, 370, 433 |
| CviKI_1 | RGCY | 8 cut(s) | 58, 65, 70, 176, 206, 251, 370, 433 |
| DdeI | CTNAG | 2 cut(s) | 66, 71 |
| DpnI | GATC | 2 cut(s) | 90, 261 |
| DpnII | GATC | 2 cut(s) | 88, 259 |
| DriI | GACNNNNNGTC | 1 cut(s) | 214 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 214 |
| Eco31I | GGTCTC | 1 cut(s) | 401 |
| Eco47I | GGWCC | 1 cut(s) | 24 |
| Eco88I | CYCGRG | 1 cut(s) | 413 |
| Eco91I | GGTNACC | 1 cut(s) | 418 |
| EcoO65I | GGTNACC | 1 cut(s) | 418 |
| Esp3I | CGTCTC | 1 cut(s) | 431 |
| FaiI | YATR | 2 cut(s) | 81, 212 |
| FbaI | TGATCA | 1 cut(s) | 259 |
| FblI | GTMKAC | 1 cut(s) | 375 |
| FspBI | CTAG | 4 cut(s) | 129, 182, 338, 380 |
| HincII | GTYRAC | 2 cut(s) | 126, 376 |
| HindII | GTYRAC | 2 cut(s) | 126, 376 |
| HindIII | AAGCTT | 1 cut(s) | 368 |
| HinfI | GANTC | 2 cut(s) | 215, 394 |
| HphI | GGTGA | 1 cut(s) | 430 |
| Hpy166II | GTNNAC | 3 cut(s) | 126, 167, 376 |
| Hpy188I | TCNGA | 1 cut(s) | 220 |
| Hpy8I | GTNNAC | 3 cut(s) | 126, 167, 376 |
| HpyAV | CCTTC | 2 cut(s) | 102, 223 |
| HpyCH4III | ACNGT | 1 cut(s) | 328 |
| HpyCH4IV | ACGT | 2 cut(s) | 190, 199 |
| HpyCH4V | TGCA | 2 cut(s) | 275, 428 |
| HpyF3I | CTNAG | 2 cut(s) | 66, 71 |
| HpySE526I | ACGT | 2 cut(s) | 190, 199 |
| Ksp22I | TGATCA | 1 cut(s) | 259 |
| Kzo9I | GATC | 2 cut(s) | 88, 259 |
| LmnI | GCTCC | 2 cut(s) | 304, 319 |
| LpnPI | CCDG | 2 cut(s) | 49, 188 |
| MaeI | CTAG | 4 cut(s) | 129, 182, 338, 380 |
| MaeII | ACGT | 2 cut(s) | 190, 199 |
| MaeIII | GTNAC | 3 cut(s) | 232, 328, 418 |
| MalI | GATC | 2 cut(s) | 90, 261 |
| MboI | GATC | 2 cut(s) | 88, 259 |
| MboII | GAAGA | 2 cut(s) | 376, 403 |
| MluCI | AATT | 5 cut(s) | 222, 240, 269, 293, 314 |
| MlyI | GAGTC | 2 cut(s) | 224, 388 |
| MnlI | CCTC | 5 cut(s) | 28, 98, 109, 295, 409 |
| MseI | TTAA | 1 cut(s) | 296 |
| Mva1269I | GAATGC | 1 cut(s) | 275 |
| NdeII | GATC | 2 cut(s) | 88, 259 |
| NmuCI | GTSAC | 3 cut(s) | 232, 328, 418 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 196 |
| PctI | GAATGC | 1 cut(s) | 275 |
| PleI | GAGTC | 2 cut(s) | 223, 388 |
| PpsI | GAGTC | 2 cut(s) | 223, 388 |
| Ppu21I | YACGTR | 1 cut(s) | 191 |
| PspEI | GGTNACC | 1 cut(s) | 418 |
| PspPI | GGNCC | 1 cut(s) | 24 |
| PstI | CTGCAG | 1 cut(s) | 430 |
| SalI | GTCGAC | 1 cut(s) | 374 |
| SaqAI | TTAA | 1 cut(s) | 296 |
| Sau3AI | GATC | 2 cut(s) | 88, 259 |
| Sau96I | GGNCC | 1 cut(s) | 24 |
| SchI | GAGTC | 2 cut(s) | 224, 388 |
| SfcI | CTRYAG | 1 cut(s) | 426 |
| SinI | GGWCC | 1 cut(s) | 24 |
| SmlI | CTYRAG | 2 cut(s) | 19, 434 |
| SmoI | CTYRAG | 2 cut(s) | 19, 434 |
| SpeI | ACTAGT | 1 cut(s) | 128 |
| Sse9I | AATT | 5 cut(s) | 222, 240, 269, 293, 314 |
| SspMI | CTAG | 4 cut(s) | 129, 182, 338, 380 |
| TaaI | ACNGT | 1 cut(s) | 328 |
| TaiI | ACGT | 2 cut(s) | 193, 202 |
| TaqI | TCGA | 1 cut(s) | 375 |
| TasI | AATT | 5 cut(s) | 222, 240, 269, 293, 314 |
| Tru1I | TTAA | 1 cut(s) | 296 |
| Tru9I | TTAA | 1 cut(s) | 296 |
| TscAI | CASTG | 2 cut(s) | 333, 430 |
| TseFI | GTSAC | 3 cut(s) | 232, 328, 418 |
| Tsp45I | GTSAC | 3 cut(s) | 232, 328, 418 |
| TspDTI | ATGAA | 2 cut(s) | 23, 84 |
| TspRI | CASTG | 2 cut(s) | 333, 430 |
| VpaK11BI | GGWCC | 1 cut(s) | 24 |
| XmiI | GTMKAC | 1 cut(s) | 375 |
| XspI | CTAG | 4 cut(s) | 129, 182, 338, 380 |