pycom16g21710

Rhamnogalacturonate lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000179
Physical Location & Seq
Forward (+)
20441221 .. 20441493
273 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g21710.1

Sequence Viewer

Length: 273 bp
ATGACGAAGTATTCTGGCGTGCTTTCTTCGAAGAGCCTCAATGATTCCCAAGCGCAAGCACTGTTTAGAAGCTGCGAAGGCTTGAAGATGGACCATCTGGCGAGAGTTGGCTCGGTGCGGCGAGGCATCATGGATGATTCGAATCTTCGCTTCTCGGACTTATCTTACCTTATAAGTCTTCGCTCGGGGTATGTTTCTTTGCAGCAGGAAGATCGATGCATTGTTCAGCCGTATAGTCCCCACCGTTTCAACAGGCAATTCGGTTTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.27

Weight (kDa)

9.44

Isoelectric Point (pI)

57.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 173
AciI CCGC 1 cut(s) 118
AgsI TTSAA 2 cut(s) 85, 250
AluBI AGCT 1 cut(s) 72
AluI AGCT 1 cut(s) 72
Ama87I CYCGRG 1 cut(s) 184
ApeKI GCWGC 2 cut(s) 72, 202
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 91
AsuII TTCGAA 2 cut(s) 29, 140
AvaI CYCGRG 1 cut(s) 184
AvaII GGWCC 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 170
BbvI GCAGC 2 cut(s) 59, 214
BccI CCATC 2 cut(s) 82, 102
BceAI ACGGC 1 cut(s) 214
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BisI GCNGC 3 cut(s) 73, 119, 203
BlsI GCNGC 3 cut(s) 74, 120, 204
Bme18I GGWCC 1 cut(s) 91
BmeT110I CYCGRG 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 91
BmsI GCATC 2 cut(s) 135, 206
BpiI GAAGAC 1 cut(s) 170
Bpu14I TTCGAA 2 cut(s) 29, 140
Bsa29I ATCGAT 1 cut(s) 214
BsaBI GATNNNNATC 1 cut(s) 141
Bse8I GATNNNNATC 1 cut(s) 141
BseCI ATCGAT 1 cut(s) 214
BseGI GGATG 1 cut(s) 139
BseJI GATNNNNATC 1 cut(s) 141
BseXI GCAGC 2 cut(s) 59, 214
BshVI ATCGAT 1 cut(s) 214
BsiHKCI CYCGRG 1 cut(s) 184
BslFI GGGAC 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 222
BsoBI CYCGRG 1 cut(s) 184
Bsp119I TTCGAA 2 cut(s) 29, 140
Bsp143I GATC 1 cut(s) 211
BspACI CCGC 1 cut(s) 118
BspDI ATCGAT 1 cut(s) 214
BspQI GCTCTTC 1 cut(s) 26
BspT104I TTCGAA 2 cut(s) 29, 140
BssMI GATC 1 cut(s) 211
Bst4CI ACNGT 2 cut(s) 63, 245
Bst6I CTCTTC 1 cut(s) 26
BstBI TTCGAA 2 cut(s) 29, 140
BstC8I GCNNGC 2 cut(s) 20, 57
BstF5I GGATG 1 cut(s) 139
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstV1I GCAGC 2 cut(s) 59, 214
BstV2I GAAGAC 1 cut(s) 170
Bsu15I ATCGAT 1 cut(s) 214
BsuTUI ATCGAT 1 cut(s) 214
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 59
Cac8I GCNNGC 2 cut(s) 20, 57
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 91
ClaI ATCGAT 1 cut(s) 214
CviAII CATG 1 cut(s) 130
CviJI RGCY 5 cut(s) 36, 72, 81, 111, 229
CviKI_1 RGCY 5 cut(s) 36, 72, 81, 111, 229
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco47I GGWCC 1 cut(s) 91
Eco88I CYCGRG 1 cut(s) 184
EcoT22I ATGCAT 1 cut(s) 221
FaeI CATG 1 cut(s) 133
FaiI YATR 4 cut(s) 131, 173, 192, 234
FaqI GGGAC 1 cut(s) 222
FatI CATG 1 cut(s) 129
Fnu4HI GCNGC 3 cut(s) 73, 119, 203
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 3 cut(s) 73, 119, 203
GlaI GCGC 1 cut(s) 54
GluI GCNGC 3 cut(s) 73, 119, 203
HhaI GCGC 1 cut(s) 55
Hin1II CATG 1 cut(s) 133
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HinfI GANTC 3 cut(s) 44, 137, 142
Hpy188I TCNGA 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 2 cut(s) 63, 245
HpyCH4V TGCA 2 cut(s) 202, 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
Hsp92II CATG 1 cut(s) 133
HspAI GCGC 1 cut(s) 53
Kzo9I GATC 1 cut(s) 211
LguI GCTCTTC 1 cut(s) 26
LpnPI CCDG 3 cut(s) 83, 191, 238
Lsp1109I GCAGC 2 cut(s) 59, 214
LweI GCATC 2 cut(s) 135, 206
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 6 cut(s) 18, 43, 97, 137, 170, 221
MluCI AATT 1 cut(s) 257
MnlI CCTC 2 cut(s) 47, 116
Mph1103I ATGCAT 1 cut(s) 221
MwoI GCNNNNNNNGC 1 cut(s) 78
NdeII GATC 1 cut(s) 211
NlaIII CATG 1 cut(s) 133
NsiI ATGCAT 1 cut(s) 221
NspV TTCGAA 2 cut(s) 29, 140
PciSI GCTCTTC 1 cut(s) 26
PfeI GAWTC 3 cut(s) 44, 137, 142
PkrI GCNGC 3 cut(s) 74, 120, 204
PsiI TTATAA 1 cut(s) 173
PspPI GGNCC 1 cut(s) 91
SapI GCTCTTC 1 cut(s) 26
SatI GCNGC 3 cut(s) 73, 119, 203
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 1 cut(s) 91
SetI ASST 2 cut(s) 74, 171
SfaNI GCATC 2 cut(s) 135, 206
SfuI TTCGAA 2 cut(s) 29, 140
SinI GGWCC 1 cut(s) 91
Sse9I AATT 1 cut(s) 257
SsiI CCGC 1 cut(s) 118
TaaI ACNGT 2 cut(s) 63, 245
TaqI TCGA 3 cut(s) 29, 140, 214
TasI AATT 1 cut(s) 257
TauI GCSGC 1 cut(s) 121
TfiI GAWTC 3 cut(s) 44, 137, 142
TscAI CASTG 1 cut(s) 66
TseI GCWGC 2 cut(s) 72, 202
TspRI CASTG 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 91
Zsp2I ATGCAT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.