Rmu_sc0005060.1_g000012

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005060.1
OG0000179
Physical Location & Seq
Reverse (-)
77214 .. 81717
4504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005060.1_g000012.1.cds

Sequence Viewer

Length: 2574 bp
atggccttcttcaagtgcttcaagaaagggacagtcaccatcctcgaggacctggaggacactcaaagtgatggcactactctgcagaacactcctcaagtcccattcacgcttctcagcgatcgtgtacgcaacggttcagtgaagtggagcagtgcatatcgtgcaaacgggggcttctcttacatagagttccactgggaatgggcagaagatatcttaagcaggaatggcaagctttctcgggatgccggtctctatcgagcgatattcgcctcactattcagctatgaccgtgttgcacctgtcatacgggctttttgcgagtattggtgccttatgacgaataccctccacacttctaacggggaaatgtccatcaccctctgggatttggaccaacttggaggtttacccattgccggacgattttatgatgaggttgttccagctgctgaagcactttctgcaacaagcaaagggagtcagcagagctgccgctatataggacctttgcgctataggagacctccaaacaaaagcaccaagaacaaaagagatctgcccccgaatgtgtttaatctatctggcaggatccatgagatccaacaacgtacttctgcagacctcgcagtatttgataacttaggcattaagagtgaagatgtagagcccacctatttggctgcctttcttgcttattggttgtgcctgtttgttttacctagagacgacactggtttgattcacccgggagtattcaaagttgccagcaaaatgtcacagggtgtacagttttgcctagccgtaccagtgctagccagcatctatcagggtttaggtgagatttctgtttccagtgatccaggtcccgtatggttgacttctccggagaattttcagcaaaacattgtggggactcacatgcgctttctttgttcaatgcatgtgaggatggatgcatttgccaggacctcatatatcgcatcagccttcgatctgggtatctttctctcagacaggattaccgacgaatcattcagtggacagtttggttatgtccaagacatttctggcagccttaagaatgacatttgtaccaacgtgtgggctttgatttacaagcattgggattcttgcaccagaatgaacaccaagtgtgtggtaacgttgccgatccagagtgctatcagggagaacatggttatccgagactatgtcgattggtggtctaaagtgtaccgttctacaccagtgaaggcaacgaaaatggcgtctactaatgaatccctgcacaagcctctaaaagaaaaacaagacaagaacgtcaaccgcgcggcgctgcctcgtagccaaaatgtgattgcttgtgaagtcgaatgtagcaccaacgtccctgcgcctcctgataggactttgctcccagatagcgaccgtcaggctcatccggtcgacattctagaggatgatggatactctttagattctcacgtcgctttggtccatccacctaagctgaaacgacccgtaatccaagaaagaaggcgtagtgggagcagtagcagtagtaacagtgaggtacactttaagcgtaagaagaccgacatcaaccttggccctacttattgtgatctcaatgctaaatatactctgaatactgactttcttgagattgatggtcatccactttggggaaacgatgatgcctcctcagaccatatacgtgttccttctgcagcggaagttgaggcttactctttacccatgaaaggaacatccaatgcaaagaatgactcacagcaaattgaccctacaggaagtggggttcttgattgtggagggaataggtggaatttggggctattgagtaaggattcgatgatcaagatgaagacgcatgctgaggggagaggaaatgggagactcactgtgcaacaggtggttttcgagctcaagcaaaaggtgagtgctgttcgaaaggaatgcattaggttgatgggtacatttgtgtggtatcatgaggggcatgctggaatgcattttggtccacttaccaaggtgcatcctcccaagcctctgaacaccatagccttttctgaggcctctcttggtggagctgctattatagatgccagccaaagacttcttgatattcgtcaacaagctgctactgcagtttgtgaaaaaattaaagatatgataatgaagcactcctcaaagaccattctttctagcaagggggaacttgacaagctgatagctaagcttagcctttatgggattgatccttcatccgtaagggacaaagtcgaaggattgttgactagtgctgaccaatacaacttagcacggcttgcttgttcacgcaaggctactccaggcacacgcaatcaacatctggctgacacagaatcagaaattgcaaaggagaagaagcttgtcgacctagaaaaagagaagactgaaatccaagagacccccgaggtgaccactgcagagattgagacgacaaaatcattgcaagatacttttgagaaccaccgcaatagcttcaagggtttgacttgggtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

857

Amino Acids

95.6

Weight (kDa)

7.55

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1325
AbsI CCTCGAGG 1 cut(s) 44
AccB1I GGYRCC 1 cut(s) 333
AccB7I CCANNNNNTGG 1 cut(s) 1107
AccI GTMKAC 3 cut(s) 1277, 1452, 2442
AccII CGCG 2 cut(s) 1335, 1337
AccIII TCCGGA 1 cut(s) 889
AciI CCGC 5 cut(s) 499, 1333, 1337, 1739, 2542
AclI AACGTT 1 cut(s) 1169
AclWI GGATC 6 cut(s) 589, 598, 602, 857, 1171, 2279
AcsI RAATTY 2 cut(s) 895, 1852
AcuI CTGAAG 1 cut(s) 477
AcyI GRCGYC 1 cut(s) 1274
AdeI CACNNNGTG 2 cut(s) 788, 1158
AfaI GTAC 8 cut(s) 129, 616, 792, 810, 1099, 1241, 1581, 2002
AfiI CCNNNNNNNGG 4 cut(s) 422, 1107, 1691, 1769
AflII CTTAAG 2 cut(s) 220, 1082
AflIII ACRYGT 2 cut(s) 1104, 1723
AgsI TTSAA 5 cut(s) 13, 22, 763, 942, 2554
AhlI ACTAGT 1 cut(s) 2324
AjiI CACGTC 1 cut(s) 1492
AjnI CCWGG 4 cut(s) 51, 865, 968, 2377
AloI GAACNNNNNNTCC 2 cut(s) 1809, 1841
Alw21I GWGCWC 1 cut(s) 1953
Alw26I GTCTC 7 cut(s) 260, 520, 723, 1206, 1915, 2468, 2498
AlwI GGATC 6 cut(s) 589, 598, 602, 857, 1171, 2279
AlwNI CAGNNNCTG 1 cut(s) 455
Ama87I CYCGRG 4 cut(s) 44, 243, 751, 2480
Aor13HI TCCGGA 1 cut(s) 889
AoxI GGCC 3 cut(s) 3, 1615, 2100
ApeKI GCWGC 8 cut(s) 452, 495, 686, 1077, 1342, 1736, 2117, 2165
ApoI RAATTY 2 cut(s) 895, 1852
ArsI GACNNNNNNTTYG 2 cut(s) 1259, 1291
AspLEI GCGC 5 cut(s) 519, 930, 1337, 1342, 1402
AspS9I GGNCC 8 cut(s) 49, 397, 509, 869, 972, 1501, 1616, 2045
AsuC2I CCSGG 2 cut(s) 752, 753
AsuHPI GGTGA 6 cut(s) 28, 373, 740, 854, 1975, 2497
AsuII TTCGAA 1 cut(s) 1975
AsuNHI GCTAGC 1 cut(s) 817
AvaI CYCGRG 4 cut(s) 44, 243, 751, 2480
AvaII GGWCC 7 cut(s) 49, 397, 509, 869, 972, 1501, 2045
BaeI ACNNNNGTAYC 4 cut(s) 1081, 1114, 1992, 2025
BamHI GGATCC 1 cut(s) 594
BanI GGYRCC 1 cut(s) 333
BanII GRGCYC 2 cut(s) 675, 1953
BbsI GAAGAC 3 cut(s) 1604, 1898, 2465
Bbv12I GWGCWC 1 cut(s) 1953
BbvCI CCTCAGC 1 cut(s) 1902
BbvI GCAGC 8 cut(s) 439, 482, 673, 1089, 1329, 1748, 2104, 2152
BccI CCATC 8 cut(s) 47, 65, 386, 949, 1463, 1512, 1670, 1990
BceAI ACGGC 2 cut(s) 791, 2366
BcgI CGANNNNNNTGC 2 cut(s) 1965, 1999
BciT130I CCWGG 4 cut(s) 53, 867, 970, 2379
BciVI GTATCC 1 cut(s) 1466
BclI TGATCA 1 cut(s) 1881
BcnI CCSGG 2 cut(s) 752, 753
BcoDI GTCTC 7 cut(s) 260, 520, 723, 1206, 1915, 2468, 2498
BcuI ACTAGT 1 cut(s) 2324
BfaI CTAG 7 cut(s) 726, 803, 818, 1460, 2232, 2325, 2447
BfmI CTRYAG 7 cut(s) 83, 520, 621, 1734, 1812, 2172, 2493
BfoI RGCGCY 1 cut(s) 1343
BfrI CTTAAG 2 cut(s) 220, 1082
BfuI GTATCC 1 cut(s) 1466
BglII AGATCT 1 cut(s) 559
BlpI GCTNAGC 2 cut(s) 2262, 2267
Bme1390I CCNGG 6 cut(s) 53, 752, 753, 867, 970, 2379
Bme18I GGWCC 7 cut(s) 49, 397, 509, 869, 972, 1501, 2045
BmeT110I CYCGRG 4 cut(s) 44, 243, 751, 2480
BmgBI CACGTC 1 cut(s) 1492
BmgT120I GGNCC 8 cut(s) 49, 397, 509, 869, 972, 1501, 1616, 2045
BmiI GGNNCC 3 cut(s) 335, 596, 871
BmrFI CCNGG 6 cut(s) 53, 752, 753, 867, 970, 2379
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 7 cut(s) 238, 834, 949, 995, 1693, 2071, 2119
BmtI GCTAGC 1 cut(s) 821
BmuI ACTGGG 1 cut(s) 208
BpiI GAAGAC 3 cut(s) 1604, 1898, 2465
BplI GAGNNNNNCTC 2 cut(s) 1739, 1771
BpmI CTGGAG 2 cut(s) 74, 2361
Bpu10I CCTNAGC 2 cut(s) 1512, 1902
Bpu1102I GCTNAGC 2 cut(s) 2262, 2267
Bpu14I TTCGAA 1 cut(s) 1975
BpuEI CTTGAG 3 cut(s) 81, 1688, 1937
BpuMI CCSGG 2 cut(s) 752, 753
BsaAI YACGTR 1 cut(s) 1724
BsaBI GATNNNNATC 1 cut(s) 1680
BsaHI GRCGYC 1 cut(s) 1274
BsaI GGTCTC 3 cut(s) 260, 520, 2468
BsaJI CCNNGG 4 cut(s) 751, 1612, 2055, 2481
BsaWI WCCGGW 2 cut(s) 889, 1447
Bsc4I CCNNNNNNNGG 4 cut(s) 422, 1107, 1691, 1769
Bse118I RCCGGY 1 cut(s) 251
Bse1I ACTGG 5 cut(s) 203, 742, 812, 858, 1253
Bse3DI GCAATG 2 cut(s) 417, 2516
Bse8I GATNNNNATC 1 cut(s) 1680
BseAI TCCGGA 1 cut(s) 889
BseBI CCWGG 4 cut(s) 53, 867, 970, 2379
BseDI CCNNGG 4 cut(s) 751, 1612, 2055, 2481
BseJI GATNNNNATC 1 cut(s) 1680
BseLI CCNNNNNNNGG 4 cut(s) 422, 1107, 1691, 1769
BseMI GCAATG 2 cut(s) 417, 2516
BseMII CTCAG 5 cut(s) 130, 1029, 1725, 1893, 2088
BseNI ACTGG 5 cut(s) 203, 742, 812, 858, 1253
BseRI GAGGAG 3 cut(s) 84, 1699, 2203
BseXI GCAGC 8 cut(s) 439, 482, 673, 1089, 1329, 1748, 2104, 2152
BsgI GTGCAG 1 cut(s) 1277
Bsh1236I CGCG 2 cut(s) 1335, 1337
Bsh1285I CGRYCG 3 cut(s) 124, 1435, 1452
BshFI GGCC 3 cut(s) 5, 1617, 2102
BshNI GGYRCC 1 cut(s) 333
BsiEI CGRYCG 3 cut(s) 124, 1435, 1452
BsiHKAI GWGCWC 1 cut(s) 1953
BsiHKCI CYCGRG 4 cut(s) 44, 243, 751, 2480
BsiSI CCGG 5 cut(s) 252, 423, 752, 890, 1448
BslFI GGGAC 6 cut(s) 43, 86, 855, 931, 1379, 2315
BslI CCNNNNNNNGG 4 cut(s) 422, 1107, 1691, 1769
BsmAI GTCTC 7 cut(s) 260, 520, 723, 1206, 1915, 2468, 2498
BsmBI CGTCTC 2 cut(s) 723, 2498
BsmFI GGGAC 6 cut(s) 43, 86, 855, 931, 1379, 2315
BsmI GAATGC 2 cut(s) 1988, 2040
BsnI GGCC 3 cut(s) 5, 1617, 2102
Bso31I GGTCTC 3 cut(s) 260, 520, 2468
BsoBI CYCGRG 4 cut(s) 44, 243, 751, 2480
Bsp119I TTCGAA 1 cut(s) 1975
Bsp1286I GDGCHC 2 cut(s) 675, 1953
Bsp13I TCCGGA 1 cut(s) 889
Bsp1407I TGTACA 1 cut(s) 790
Bsp1720I GCTNAGC 2 cut(s) 2262, 2267
BspACI CCGC 5 cut(s) 499, 1333, 1337, 1739, 2542
BspANI GGCC 3 cut(s) 5, 1617, 2102
BspCNI CTCAG 5 cut(s) 129, 1028, 1724, 1894, 2089
BspEI TCCGGA 1 cut(s) 889
BspFNI CGCG 2 cut(s) 1335, 1337
BspHI TCATGA 1 cut(s) 2017
BspLI GGNNCC 3 cut(s) 335, 596, 871
BspMAI CTGCAG 5 cut(s) 87, 625, 1738, 2176, 2497
BspOI GCTAGC 1 cut(s) 821
BspPI GGATC 6 cut(s) 589, 598, 602, 857, 1171, 2279
BspT104I TTCGAA 1 cut(s) 1975
BspT107I GGYRCC 1 cut(s) 333
BspTI CTTAAG 2 cut(s) 220, 1082
BspTNI GGTCTC 3 cut(s) 260, 520, 2468
BsrDI GCAATG 2 cut(s) 417, 2516
BsrFI RCCGGY 1 cut(s) 251
BsrGI TGTACA 1 cut(s) 790
BsrI ACTGG 5 cut(s) 203, 742, 812, 858, 1253
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 4 cut(s) 751, 1612, 2055, 2481
BssNI GRCGYC 1 cut(s) 1274
BssT1I CCWWGG 2 cut(s) 1612, 2055
Bst2UI CCWGG 4 cut(s) 53, 867, 970, 2379
Bst4CI ACNGT 9 cut(s) 34, 137, 296, 795, 1050, 1244, 1436, 1574, 1930
BstACI GRCGYC 1 cut(s) 1274
BstAFI CTTAAG 2 cut(s) 220, 1082
BstAPI GCANNNNNTGC 3 cut(s) 164, 467, 2354
BstAUI TGTACA 1 cut(s) 790
BstBAI YACGTR 1 cut(s) 1724
BstBI TTCGAA 1 cut(s) 1975
BstC8I GCNNGC 8 cut(s) 236, 772, 819, 823, 1899, 2028, 2134, 2355
BstEII GGTNACC 1 cut(s) 2485
BstFNI CGCG 2 cut(s) 1335, 1337
BstH2I RGCGCY 1 cut(s) 1343
BstHHI GCGC 5 cut(s) 519, 930, 1337, 1342, 1402
BstMAI GTCTC 7 cut(s) 260, 520, 723, 1206, 1915, 2468, 2498
BstMCI CGRYCG 3 cut(s) 124, 1435, 1452
BstMWI GCNNNNNNNGC 9 cut(s) 164, 231, 272, 458, 467, 629, 695, 2171, 2354
BstNI CCWGG 4 cut(s) 53, 867, 970, 2379
BstNSI RCATGY 4 cut(s) 928, 950, 1901, 2030
BstPI GGTNACC 1 cut(s) 2485
BstSCI CCNGG 6 cut(s) 51, 750, 751, 865, 968, 2377
BstSFI CTRYAG 7 cut(s) 83, 520, 621, 1734, 1812, 2172, 2493
BstUI CGCG 2 cut(s) 1335, 1337
BstV1I GCAGC 8 cut(s) 439, 482, 673, 1089, 1329, 1748, 2104, 2152
BstV2I GAAGAC 3 cut(s) 1604, 1898, 2465
BstX2I RGATCY 3 cut(s) 559, 594, 603
BstXI CCANNNNNNTGG 2 cut(s) 682, 1162
BstYI RGATCY 3 cut(s) 559, 594, 603
BsuI GTATCC 1 cut(s) 1466
BsuRI GGCC 3 cut(s) 5, 1617, 2102
BtrI CACGTC 1 cut(s) 1492
BtsI GCAGTG 2 cut(s) 160, 2490
Cac8I GCNNGC 8 cut(s) 236, 772, 819, 823, 1899, 2028, 2134, 2355
CaiI CAGNNNCTG 1 cut(s) 455
CciI TCATGA 1 cut(s) 2017
CfoI GCGC 5 cut(s) 519, 930, 1337, 1342, 1402
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 8 cut(s) 49, 397, 509, 869, 972, 1501, 1616, 2045
Cfr9I CCCGGG 1 cut(s) 751
CseI GACGC 2 cut(s) 1263, 1903
Csp6I GTAC 8 cut(s) 128, 615, 791, 809, 1098, 1240, 1580, 2001
CviAII CATG 8 cut(s) 599, 925, 947, 1201, 1765, 1898, 2018, 2027
CviQI GTAC 8 cut(s) 128, 615, 791, 809, 1098, 1240, 1580, 2001
DraIII CACNNNGTG 2 cut(s) 788, 1158
DrdI GACNNNNNNGTC 1 cut(s) 1325
DseDI GACNNNNNNGTC 1 cut(s) 1325
Ecl136II GAGCTC 1 cut(s) 1951
Eco130I CCWWGG 2 cut(s) 1612, 2055
Eco147I AGGCCT 1 cut(s) 2102
Eco24I GRGCYC 2 cut(s) 675, 1953
Eco31I GGTCTC 3 cut(s) 260, 520, 2468
Eco32I GATATC 1 cut(s) 217
Eco47I GGWCC 7 cut(s) 49, 397, 509, 869, 972, 1501, 2045
Eco53kI GAGCTC 1 cut(s) 1951
Eco57I CTGAAG 1 cut(s) 477
Eco88I CYCGRG 4 cut(s) 44, 243, 751, 2480
Eco91I GGTNACC 1 cut(s) 2485
EcoICRI GAGCTC 1 cut(s) 1951
EcoO109I RGGNCCY 4 cut(s) 49, 509, 869, 972
EcoO65I GGTNACC 1 cut(s) 2485
EcoRII CCWGG 4 cut(s) 51, 865, 968, 2377
EcoRV GATATC 1 cut(s) 217
EcoT14I CCWWGG 2 cut(s) 1612, 2055
EcoT22I ATGCAT 4 cut(s) 948, 964, 1988, 2040
EcoT38I GRGCYC 2 cut(s) 675, 1953
ErhI CCWWGG 2 cut(s) 1612, 2055
Esp3I CGTCTC 2 cut(s) 723, 2498
FaeI CATG 8 cut(s) 602, 928, 950, 1204, 1768, 1901, 2021, 2030
FaqI GGGAC 6 cut(s) 43, 86, 855, 931, 1379, 2315
FatI CATG 8 cut(s) 598, 924, 946, 1200, 1764, 1897, 2017, 2026
FbaI TGATCA 1 cut(s) 1881
FblI GTMKAC 3 cut(s) 1277, 1452, 2442
FriOI GRGCYC 2 cut(s) 675, 1953
FspBI CTAG 7 cut(s) 726, 803, 818, 1460, 2232, 2325, 2447
GlaI GCGC 5 cut(s) 518, 929, 1336, 1341, 1401
GsuI CTGGAG 2 cut(s) 74, 2361
HaeII RGCGCY 1 cut(s) 1343
HaeIII GGCC 3 cut(s) 5, 1617, 2102
HapII CCGG 5 cut(s) 252, 423, 752, 890, 1448
HgaI GACGC 2 cut(s) 1263, 1903
HhaI GCGC 5 cut(s) 519, 930, 1337, 1342, 1402
Hin1I GRCGYC 1 cut(s) 1274
Hin1II CATG 8 cut(s) 602, 928, 950, 1204, 1768, 1901, 2021, 2030
Hin6I GCGC 5 cut(s) 517, 928, 1335, 1340, 1400
HinP1I GCGC 5 cut(s) 517, 928, 1335, 1340, 1400
HincII GTYRAC 6 cut(s) 882, 1330, 1453, 2159, 2322, 2443
HindII GTYRAC 6 cut(s) 882, 1330, 1453, 2159, 2322, 2443
HindIII AAGCTT 3 cut(s) 236, 2264, 2435
HpaII CCGG 5 cut(s) 252, 423, 752, 890, 1448
HphI GGTGA 6 cut(s) 28, 373, 740, 854, 1975, 2497
Hpy188I TCNGA 7 cut(s) 1018, 1211, 1653, 1714, 2079, 2098, 2416
Hpy99I CGWCG 2 cut(s) 1034, 1496
HpyAV CCTTC 7 cut(s) 16, 1003, 1252, 1536, 1740, 2298, 2306
HpyCH4III ACNGT 9 cut(s) 34, 137, 296, 795, 1050, 1244, 1436, 1574, 1930
HpyCH4IV ACGT 7 cut(s) 613, 1104, 1169, 1326, 1392, 1491, 1723
HpyF10VI GCNNNNNNNGC 9 cut(s) 164, 231, 272, 458, 467, 629, 695, 2171, 2354
HpySE526I ACGT 7 cut(s) 613, 1104, 1169, 1326, 1392, 1491, 1723
Hsp92I GRCGYC 1 cut(s) 1274
Hsp92II CATG 8 cut(s) 602, 928, 950, 1204, 1768, 1901, 2021, 2030
HspAI GCGC 5 cut(s) 517, 928, 1335, 1340, 1400
Kpn2I TCCGGA 1 cut(s) 889
Ksp22I TGATCA 1 cut(s) 1881
LmnI GCTCC 4 cut(s) 150, 1425, 1554, 2114
Lsp1109I GCAGC 8 cut(s) 439, 482, 673, 1089, 1329, 1748, 2104, 2152
LweI GCATC 7 cut(s) 238, 834, 949, 995, 1693, 2071, 2119
MaeI CTAG 7 cut(s) 726, 803, 818, 1460, 2232, 2325, 2447
MaeII ACGT 7 cut(s) 613, 1104, 1169, 1326, 1392, 1491, 1723
MaeIII GTNAC 5 cut(s) 34, 780, 1165, 1568, 2485
MboII GAAGA 6 cut(s) 224, 674, 1609, 1903, 2443, 2470
MflI RGATCY 3 cut(s) 559, 594, 603
MhlI GDGCHC 2 cut(s) 675, 1953
MluCI AATT 5 cut(s) 895, 1803, 1852, 2187, 2418
MlyI GAGTC 4 cut(s) 493, 913, 1787, 1917
MmeI TCCRAC 1 cut(s) 631
Mph1103I ATGCAT 4 cut(s) 948, 964, 1988, 2040
MroI TCCGGA 1 cut(s) 889
MseI TTAA 6 cut(s) 221, 579, 654, 1083, 1587, 2190
MslI CAYNNNNRTG 3 cut(s) 1145, 1722, 2008
MspA1I CMGCKG 2 cut(s) 452, 1739
MspCI CTTAAG 2 cut(s) 220, 1082
MspI CCGG 5 cut(s) 252, 423, 752, 890, 1448
MspR9I CCNGG 6 cut(s) 53, 752, 753, 867, 970, 2379
MteI GCGCNGCGC 1 cut(s) 1338
Mva1269I GAATGC 2 cut(s) 1988, 2040
MvaI CCWGG 4 cut(s) 53, 867, 970, 2379
MvnI CGCG 2 cut(s) 1335, 1337
MwoI GCNNNNNNNGC 9 cut(s) 164, 231, 272, 458, 467, 629, 695, 2171, 2354
NciI CCSGG 2 cut(s) 752, 753
NheI GCTAGC 1 cut(s) 817
NlaIII CATG 8 cut(s) 602, 928, 950, 1204, 1768, 1901, 2021, 2030
NlaIV GGNNCC 3 cut(s) 335, 596, 871
NmuCI GTSAC 3 cut(s) 34, 780, 2485
NsiI ATGCAT 4 cut(s) 948, 964, 1988, 2040
NspI RCATGY 4 cut(s) 928, 950, 1901, 2030
NspV TTCGAA 1 cut(s) 1975
PaeI GCATGC 2 cut(s) 1901, 2030
PaeR7I CTCGAG 1 cut(s) 44
PagI TCATGA 1 cut(s) 2017
PceI AGGCCT 1 cut(s) 2102
PcsI WCGNNNNNNNCGW 1 cut(s) 1271
PctI GAATGC 2 cut(s) 1988, 2040
PfeI GAWTC 7 cut(s) 745, 1034, 1133, 1286, 1484, 1874, 2411
PflFI GACNNNGTC 2 cut(s) 1217, 2306
PflMI CCANNNNNTGG 1 cut(s) 1107
Ple19I CGATCG 1 cut(s) 124
PleI GAGTC 4 cut(s) 492, 913, 1787, 1917
PpsI GAGTC 4 cut(s) 492, 913, 1787, 1917
Ppu21I YACGTR 1 cut(s) 1724
PpuMI RGGWCCY 4 cut(s) 49, 509, 869, 972
Psp124BI GAGCTC 1 cut(s) 1953
Psp1406I AACGTT 1 cut(s) 1169
Psp5II RGGWCCY 4 cut(s) 49, 509, 869, 972
Psp6I CCWGG 4 cut(s) 51, 865, 968, 2377
PspEI GGTNACC 1 cut(s) 2485
PspGI CCWGG 4 cut(s) 51, 865, 968, 2377
PspN4I GGNNCC 3 cut(s) 335, 596, 871
PspPI GGNCC 8 cut(s) 49, 397, 509, 869, 972, 1501, 1616, 2045
PspPPI RGGWCCY 4 cut(s) 49, 509, 869, 972
PspXI VCTCGAGB 1 cut(s) 44
PstI CTGCAG 5 cut(s) 87, 625, 1738, 2176, 2497
PstNI CAGNNNCTG 1 cut(s) 455
PsuI RGATCY 3 cut(s) 559, 594, 603
PsyI GACNNNGTC 2 cut(s) 1217, 2306
PvuI CGATCG 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 8 cut(s) 129, 616, 792, 810, 1099, 1241, 1581, 2002
RsaNI GTAC 8 cut(s) 128, 615, 791, 809, 1098, 1240, 1580, 2001
RseI CAYNNNNRTG 3 cut(s) 1145, 1722, 2008
SacI GAGCTC 1 cut(s) 1953
SalI GTCGAC 2 cut(s) 1451, 2441
SaqAI TTAA 6 cut(s) 221, 579, 654, 1083, 1587, 2190
Sau96I GGNCC 8 cut(s) 49, 397, 509, 869, 972, 1501, 1616, 2045
SchI GAGTC 4 cut(s) 493, 913, 1787, 1917
ScrFI CCNGG 6 cut(s) 53, 752, 753, 867, 970, 2379
SduI GDGCHC 2 cut(s) 675, 1953
SfaNI GCATC 7 cut(s) 238, 834, 949, 995, 1693, 2071, 2119
SfcI CTRYAG 7 cut(s) 83, 520, 621, 1734, 1812, 2172, 2493
Sfr274I CTCGAG 1 cut(s) 44
SfuI TTCGAA 1 cut(s) 1975
SinI GGWCC 7 cut(s) 49, 397, 509, 869, 972, 1501, 2045
SlaI CTCGAG 1 cut(s) 44
SmaI CCCGGG 1 cut(s) 753
SmiMI CAYNNNNRTG 3 cut(s) 1145, 1722, 2008
SmlI CTYRAG 6 cut(s) 44, 96, 220, 1082, 1667, 1952
SmoI CTYRAG 6 cut(s) 44, 96, 220, 1082, 1667, 1952
SpeI ACTAGT 1 cut(s) 2324
SphI GCATGC 2 cut(s) 1901, 2030
Sse9I AATT 5 cut(s) 895, 1803, 1852, 2187, 2418
SseBI AGGCCT 1 cut(s) 2102
SsiI CCGC 5 cut(s) 499, 1333, 1337, 1739, 2542
SspMI CTAG 7 cut(s) 726, 803, 818, 1460, 2232, 2325, 2447
SstI GAGCTC 1 cut(s) 1953
StuI AGGCCT 1 cut(s) 2102
StyD4I CCNGG 6 cut(s) 51, 750, 751, 865, 968, 2377
StyI CCWWGG 2 cut(s) 1612, 2055
TaaI ACNGT 9 cut(s) 34, 137, 296, 795, 1050, 1244, 1436, 1574, 1930
TaiI ACGT 7 cut(s) 616, 1107, 1172, 1329, 1395, 1494, 1726
TaqII GACCGA 1 cut(s) 1616
TasI AATT 5 cut(s) 895, 1803, 1852, 2187, 2418
TatI WGTACW 1 cut(s) 790
TauI GCSGC 2 cut(s) 501, 1340
TfiI GAWTC 7 cut(s) 745, 1034, 1133, 1286, 1484, 1874, 2411
Tru1I TTAA 6 cut(s) 221, 579, 654, 1083, 1587, 2190
Tru9I TTAA 6 cut(s) 221, 579, 654, 1083, 1587, 2190
TseFI GTSAC 3 cut(s) 34, 780, 2485
TseI GCWGC 8 cut(s) 452, 495, 686, 1077, 1342, 1736, 2117, 2165
Tsp45I GTSAC 3 cut(s) 34, 780, 2485
TspDTI ATGAA 6 cut(s) 1163, 1299, 1781, 1904, 2219, 2280
TspGWI ACGGA 1 cut(s) 2284
TspMI CCCGGG 1 cut(s) 751
Tth111I GACNNNGTC 2 cut(s) 1217, 2306
Van91I CCANNNNNTGG 1 cut(s) 1107
Vha464I CTTAAG 2 cut(s) 220, 1082
VpaK11BI GGWCC 7 cut(s) 49, 397, 509, 869, 972, 1501, 2045
XapI RAATTY 2 cut(s) 895, 1852
XbaI TCTAGA 1 cut(s) 1459
XceI RCATGY 4 cut(s) 928, 950, 1901, 2030
XcmI CCANNNNNNNNNTGG 2 cut(s) 873, 1070
XhoI CTCGAG 1 cut(s) 44
XmaI CCCGGG 1 cut(s) 751
XmiI GTMKAC 3 cut(s) 1277, 1452, 2442
XspI CTAG 7 cut(s) 726, 803, 818, 1460, 2232, 2325, 2447
Zsp2I ATGCAT 4 cut(s) 948, 964, 1988, 2040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.