Rmu_ssc0000259.1_g000063

NatA auxiliary

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000259.1
OG0000179
Physical Location & Seq
Reverse (-)
257304 .. 259059
1756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000259.1_g000063.1.cds

Sequence Viewer

Length: 597 bp
atgcatacaatcctctccggcgtgctcgaactatgtattttttcgggtctctttggcaaagatttggcgacaactgaagaacgcagacgacctaaatgtttggatttttccacttttttatcgtgggaaaatctattcaaagcagttaggctttgcgtgtttgtcgacgtcaaggagaagaacgtgaccgtcctaaacgcttggattcctccacctttgcacgtgaaagggacagtcaccaacctcgatgatctggaggacactcaaagtgacggcactactctacaggtgtatccatcgttgactgggcctcaaccaatcgacgtacctccttatgatcctttagctcacatcctccagtggactcatgtagcacctcgccaactagccatgttccaacaaccgagatctggcagagatcaacaaaactcgcatgtactgttgcttaagtcttcgcatcatgattataacactcctcaggtcccattcacgcttctcagtgatcgtgtacgcaacgattcagtgaagtggagcagtgcatttcgtgcaaatgggggcttctcttacacagagttctattgggaatgggtatcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NARP1 TPR_11 TPR_2

Protein Analysis

198

Amino Acids

22.62

Weight (kDa)

6.14

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AatII GACGTC 1 cut(s) 171
AccI GTMKAC 1 cut(s) 165
AclWI GGATC 1 cut(s) 332
AcuI CTGAAG 1 cut(s) 96
AcvI CACGTG 1 cut(s) 223
AcyI GRCGYC 1 cut(s) 168
AfaI GTAC 3 cut(s) 327, 438, 510
AfiI CCNNNNNNNGG 1 cut(s) 410
AflII CTTAAG 1 cut(s) 446
AgsI TTSAA 1 cut(s) 139
AluBI AGCT 1 cut(s) 347
AluI AGCT 1 cut(s) 347
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 1 cut(s) 332
AoxI GGCC 1 cut(s) 308
AspS9I GGNCC 2 cut(s) 308, 481
AsuHPI GGTGA 1 cut(s) 229
AvaII GGWCC 1 cut(s) 481
AxyI CCTNAGG 1 cut(s) 477
BaeI ACNNNNGTAYC 2 cut(s) 275, 308
BbrPI CACGTG 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 444
Bbv12I GWGCWC 1 cut(s) 27
BccI CCATC 1 cut(s) 304
BceAI ACGGC 1 cut(s) 289
BciVI GTATCC 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 386
BfmI CTRYAG 1 cut(s) 284
BfrI CTTAAG 1 cut(s) 446
BfuI GTATCC 1 cut(s) 303
BglII AGATCT 1 cut(s) 407
Bme18I GGWCC 1 cut(s) 481
BmgT120I GGNCC 2 cut(s) 308, 481
BmiI GGNNCC 1 cut(s) 483
BmrI ACTGGG 1 cut(s) 315
BmsI GCATC 1 cut(s) 466
BmuI ACTGGG 1 cut(s) 315
BpiI GAAGAC 1 cut(s) 444
BpmI CTGGAG 2 cut(s) 275, 341
BsaAI YACGTR 1 cut(s) 223
BsaHI GRCGYC 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 53
Bsc4I CCNNNNNNNGG 1 cut(s) 410
Bse1I ACTGG 2 cut(s) 310, 358
Bse21I CCTNAGG 1 cut(s) 477
BseGI GGATG 1 cut(s) 351
BseLI CCNNNNNNNGG 1 cut(s) 410
BseMII CTCAG 2 cut(s) 491, 511
BseNI ACTGG 2 cut(s) 310, 358
BseRI GAGGAG 1 cut(s) 465
BshFI GGCC 1 cut(s) 310
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 1 cut(s) 18
BslFI GGGAC 2 cut(s) 244, 467
BslI CCNNNNNNNGG 1 cut(s) 410
BsmAI GTCTC 1 cut(s) 53
BsmFI GGGAC 2 cut(s) 244, 467
BsnI GGCC 1 cut(s) 310
Bso31I GGTCTC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 5 cut(s) 250, 337, 407, 418, 502
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 2 cut(s) 490, 510
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 1 cut(s) 483
BspPI GGATC 1 cut(s) 332
BspTI CTTAAG 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 53
BsrI ACTGG 2 cut(s) 310, 358
BssMI GATC 5 cut(s) 250, 337, 407, 418, 502
BssNI GRCGYC 1 cut(s) 168
Bst4CI ACNGT 3 cut(s) 190, 235, 441
BstACI GRCGYC 1 cut(s) 168
BstAFI CTTAAG 1 cut(s) 446
BstAPI GCANNNNNTGC 1 cut(s) 545
BstBAI YACGTR 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 2 cut(s) 477, 497
BstF5I GGATG 1 cut(s) 351
BstKTI GATC 5 cut(s) 253, 340, 410, 421, 505
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 5 cut(s) 250, 337, 407, 418, 502
BstMWI GCNNNNNNNGC 1 cut(s) 545
BstNSI RCATGY 1 cut(s) 437
BstSFI CTRYAG 1 cut(s) 284
BstV2I GAAGAC 1 cut(s) 444
BstX2I RGATCY 1 cut(s) 407
BstYI RGATCY 1 cut(s) 407
Bsu36I CCTNAGG 1 cut(s) 477
BsuI GTATCC 1 cut(s) 303
BsuRI GGCC 1 cut(s) 310
BtsCI GGATG 1 cut(s) 351
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 4 cut(s) 365, 505, 528, 541
Cac8I GCNNGC 1 cut(s) 23
CciI TCATGA 1 cut(s) 460
Cfr13I GGNCC 2 cut(s) 308, 481
Csp6I GTAC 3 cut(s) 326, 437, 509
CviAII CATG 4 cut(s) 368, 391, 434, 461
CviJI RGCY 5 cut(s) 151, 310, 347, 389, 558
CviKI_1 RGCY 5 cut(s) 151, 310, 347, 389, 558
CviQI GTAC 3 cut(s) 326, 437, 509
DdeI CTNAG 2 cut(s) 477, 497
DpnI GATC 5 cut(s) 252, 339, 409, 420, 504
DpnII GATC 5 cut(s) 250, 337, 407, 418, 502
Eco31I GGTCTC 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 481
Eco57I CTGAAG 1 cut(s) 96
Eco72I CACGTG 1 cut(s) 223
Eco81I CCTNAGG 1 cut(s) 477
EcoO109I RGGNCCY 1 cut(s) 481
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 371, 394, 437, 464
FaiI YATR 8 cut(s) 6, 34, 336, 369, 392, 435, 462, 468
FaqI GGGAC 2 cut(s) 244, 467
FatI CATG 4 cut(s) 367, 390, 433, 460
FblI GTMKAC 1 cut(s) 165
FokI GGATG 1 cut(s) 338
FspBI CTAG 1 cut(s) 386
GsuI CTGGAG 2 cut(s) 275, 341
HaeIII GGCC 1 cut(s) 310
HapII CCGG 1 cut(s) 18
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 4 cut(s) 371, 394, 437, 464
HincII GTYRAC 2 cut(s) 166, 303
HindII GTYRAC 2 cut(s) 166, 303
HinfI GANTC 3 cut(s) 205, 364, 518
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 4 cut(s) 166, 303, 363, 509
Hpy188III TCNNGA 2 cut(s) 254, 461
Hpy8I GTNNAC 4 cut(s) 166, 303, 363, 509
Hpy99I CGWCG 2 cut(s) 170, 326
HpyCH4III ACNGT 3 cut(s) 190, 235, 441
HpyCH4IV ACGT 4 cut(s) 168, 183, 222, 324
HpyCH4V TGCA 4 cut(s) 4, 220, 539, 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 545
HpyF3I CTNAG 2 cut(s) 477, 497
HpySE526I ACGT 4 cut(s) 168, 183, 222, 324
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 4 cut(s) 371, 394, 437, 464
Kzo9I GATC 5 cut(s) 250, 337, 407, 418, 502
LmnI GCTCC 1 cut(s) 531
LpnPI CCDG 7 cut(s) 31, 239, 272, 291, 371, 396, 464
LweI GCATC 1 cut(s) 466
MaeI CTAG 1 cut(s) 386
MaeII ACGT 4 cut(s) 168, 183, 222, 324
MaeIII GTNAC 3 cut(s) 184, 235, 269
MalI GATC 5 cut(s) 252, 339, 409, 420, 504
MboI GATC 5 cut(s) 250, 337, 407, 418, 502
MboII GAAGA 3 cut(s) 89, 190, 444
MflI RGATCY 1 cut(s) 407
MhlI GDGCHC 1 cut(s) 27
MlyI GAGTC 1 cut(s) 358
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 9 cut(s) 23, 219, 250, 254, 321, 339, 365, 387, 486
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 447, 595
MspCI CTTAAG 1 cut(s) 446
MspI CCGG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 545
NdeII GATC 5 cut(s) 250, 337, 407, 418, 502
NlaIII CATG 4 cut(s) 371, 394, 437, 464
NlaIV GGNNCC 1 cut(s) 483
NmuCI GTSAC 3 cut(s) 184, 235, 269
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 437
PagI TCATGA 1 cut(s) 460
PfeI GAWTC 2 cut(s) 205, 518
PleI GAGTC 1 cut(s) 358
PmaCI CACGTG 1 cut(s) 223
PmlI CACGTG 1 cut(s) 223
PpsI GAGTC 1 cut(s) 358
Ppu21I YACGTR 1 cut(s) 223
PpuMI RGGWCCY 1 cut(s) 481
PsiI TTATAA 1 cut(s) 468
Psp5II RGGWCCY 1 cut(s) 481
PspCI CACGTG 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 483
PspPI GGNCC 2 cut(s) 308, 481
PspPPI RGGWCCY 1 cut(s) 481
PsuI RGATCY 1 cut(s) 407
RsaI GTAC 3 cut(s) 327, 438, 510
RsaNI GTAC 3 cut(s) 326, 437, 509
SalI GTCGAC 1 cut(s) 164
SaqAI TTAA 2 cut(s) 447, 595
Sau3AI GATC 5 cut(s) 250, 337, 407, 418, 502
Sau96I GGNCC 2 cut(s) 308, 481
SchI GAGTC 1 cut(s) 358
SduI GDGCHC 1 cut(s) 27
SfaNI GCATC 1 cut(s) 466
SfcI CTRYAG 1 cut(s) 284
SinI GGWCC 1 cut(s) 481
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
SspMI CTAG 1 cut(s) 386
TaaI ACNGT 3 cut(s) 190, 235, 441
TaiI ACGT 4 cut(s) 171, 186, 225, 327
TaqI TCGA 4 cut(s) 27, 165, 246, 321
TatI WGTACW 1 cut(s) 436
TfiI GAWTC 2 cut(s) 205, 518
Tru1I TTAA 2 cut(s) 447, 595
Tru9I TTAA 2 cut(s) 447, 595
TscAI CASTG 4 cut(s) 365, 505, 528, 541
TseFI GTSAC 3 cut(s) 184, 235, 269
Tsp45I GTSAC 3 cut(s) 184, 235, 269
TspRI CASTG 4 cut(s) 365, 505, 528, 541
Vha464I CTTAAG 1 cut(s) 446
VpaK11BI GGWCC 1 cut(s) 481
XceI RCATGY 1 cut(s) 437
XmiI GTMKAC 1 cut(s) 165
XspI CTAG 1 cut(s) 386
ZraI GACGTC 1 cut(s) 169
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.