FvH4_3g26700

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000179
Physical Location & Seq
Forward (+)
19809098 .. 19809860
763 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26700.t1

Sequence Viewer

Length: 630 bp
ATGAAATTTTTCAAGAGTTTCAAGAAGGGCACAGTCACTATCCTTGAATACGCCAACGACGATCAAAGTGATGGCACCACCTTATATACCTATCCTTCACTAACTGGGCCGCACGCCATCGAGACACCTTTCTACGACGGTTTAGGTCATATTCCCCGGTGGACTTTCCAACAATCACGTCCGCTGGCCACCTTTCAACCAACCAAATCCACAAGTGAGAAGCGAAGCGCAAATGTATGGATGTTGAAGTCTGCCCATCATGATCAGAATGCTCCTCAGACACCGTTCGTACTTCTCAGCAACCGCATGTTCAATGGTTCAGTGCAATGGAGTGGGTTTCGTGCCAATGGAGCCTTCTCCTACACGGAACGTTATTGGGAGTGCACGAATACTCTTCACACATCATGTGGCGAAATGTTTATTTCTTGGAGGGAGTTGACATATATTTGTGGCTTGCCCATCACTGGAAGGTTTTACAACAAAGTTGTTCCACCTATCGAAGAATTTTCTACCAAGGGTAAAGGAGGCGAATCGGTCATTCCCAAGAGTTGCAAGTTCTTATTTCTCGCATACCATAAGCTTTGCAAGGATGATAAAGGACAGAAGGTCAAGGTCGCGTCATGGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

210

Amino Acids

23.85

Weight (kDa)

9.24

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 74
AccII CGCG 1 cut(s) 617
AciI CCGC 3 cut(s) 110, 182, 304
AclI AACGTT 1 cut(s) 370
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 2 cut(s) 5, 503
AfaI GTAC 1 cut(s) 291
AfiI CCNNNNNNNGG 1 cut(s) 464
AgsI TTSAA 6 cut(s) 13, 22, 47, 197, 247, 313
AhdI GACNNNNNGTC 1 cut(s) 605
AjiI CACGTC 1 cut(s) 179
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 1 cut(s) 580
AluI AGCT 1 cut(s) 580
Alw21I GWGCWC 1 cut(s) 386
Alw26I GTCTC 1 cut(s) 116
Alw44I GTGCAC 1 cut(s) 382
AoxI GGCC 2 cut(s) 107, 186
ApaLI GTGCAC 1 cut(s) 382
ApoI RAATTY 2 cut(s) 5, 503
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 107
AsuC2I CCSGG 1 cut(s) 157
BaeGI GKGCMC 2 cut(s) 32, 386
BalI TGGCCA 1 cut(s) 188
BanI GGYRCC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 386
BccI CCATC 4 cut(s) 65, 125, 264, 467
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 1 cut(s) 628
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
Bme1390I CCNGG 1 cut(s) 157
BmeRI GACNNNNNGTC 1 cut(s) 605
BmgBI CACGTC 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 2 cut(s) 76, 352
BmrFI CCNGG 1 cut(s) 157
BmrI ACTGGG 1 cut(s) 114
BmuI ACTGGG 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 155, 513
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse1I ACTGG 2 cut(s) 109, 469
Bse3DI GCAATG 1 cut(s) 332
BseDI CCNNGG 2 cut(s) 155, 513
BseGI GGATG 2 cut(s) 246, 595
BseLI CCNNNNNNNGG 1 cut(s) 464
BseMI GCAATG 1 cut(s) 332
BseMII CTCAG 2 cut(s) 290, 310
BseNI ACTGG 2 cut(s) 109, 469
BseRI GAGGAG 1 cut(s) 264
BseSI GKGCMC 2 cut(s) 32, 386
Bsh1236I CGCG 1 cut(s) 617
BshFI GGCC 2 cut(s) 109, 188
BshNI GGYRCC 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 386
BsiSI CCGG 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 464
BsmAI GTCTC 1 cut(s) 116
BsmI GAATGC 1 cut(s) 274
BsnI GGCC 2 cut(s) 109, 188
Bsp1286I GDGCHC 2 cut(s) 32, 386
Bsp143I GATC 3 cut(s) 61, 262, 624
BspACI CCGC 3 cut(s) 110, 182, 304
BspANI GGCC 2 cut(s) 109, 188
BspCNI CTCAG 2 cut(s) 289, 309
BspFNI CGCG 1 cut(s) 617
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 2 cut(s) 76, 352
BspT107I GGYRCC 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 332
BsrI ACTGG 2 cut(s) 109, 469
BssECI CCNNGG 2 cut(s) 155, 513
BssMI GATC 3 cut(s) 61, 262, 624
BssT1I CCWWGG 1 cut(s) 513
Bst4CI ACNGT 3 cut(s) 34, 140, 285
Bst6I CTCTTC 1 cut(s) 399
BstC8I GCNNGC 3 cut(s) 114, 186, 455
BstDEI CTNAG 2 cut(s) 276, 296
BstF5I GGATG 2 cut(s) 246, 595
BstFNI CGCG 1 cut(s) 617
BstHHI GCGC 1 cut(s) 230
BstKTI GATC 3 cut(s) 64, 265, 627
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 3 cut(s) 61, 262, 624
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 155
BstSLI GKGCMC 2 cut(s) 32, 386
BstUI CGCG 1 cut(s) 617
BstX2I RGATCY 1 cut(s) 624
BstYI RGATCY 1 cut(s) 624
BsuRI GGCC 2 cut(s) 109, 188
BtrI CACGTC 1 cut(s) 179
BtsCI GGATG 2 cut(s) 246, 595
BtsIMutI CAGTG 2 cut(s) 327, 462
Cac8I GCNNGC 3 cut(s) 114, 186, 455
CciI TCATGA 1 cut(s) 259
CfoI GCGC 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 107
CseI GACGC 1 cut(s) 606
Csp6I GTAC 1 cut(s) 290
CviAII CATG 4 cut(s) 260, 307, 405, 621
CviJI RGCY 5 cut(s) 109, 188, 353, 453, 580
CviKI_1 RGCY 5 cut(s) 109, 188, 353, 453, 580
CviQI GTAC 1 cut(s) 290
DdeI CTNAG 2 cut(s) 276, 296
DpnI GATC 3 cut(s) 63, 264, 626
DpnII GATC 3 cut(s) 61, 262, 624
DriI GACNNNNNGTC 1 cut(s) 605
EaeI YGGCCR 1 cut(s) 186
Eam1104I CTCTTC 1 cut(s) 399
Eam1105I GACNNNNNGTC 1 cut(s) 605
EarI CTCTTC 1 cut(s) 399
Eco130I CCWWGG 1 cut(s) 513
EcoT14I CCWWGG 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 4 cut(s) 263, 310, 408, 624
FatI CATG 4 cut(s) 259, 306, 404, 620
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 110
FokI GGATG 2 cut(s) 253, 602
Fsp4HI GCNGC 1 cut(s) 110
FspBI CTAG 1 cut(s) 628
GlaI GCGC 1 cut(s) 229
GluI GCNGC 1 cut(s) 110
HaeIII GGCC 2 cut(s) 109, 188
HapII CCGG 1 cut(s) 157
HgaI GACGC 1 cut(s) 606
HhaI GCGC 1 cut(s) 230
Hin1II CATG 4 cut(s) 263, 310, 408, 624
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HincII GTYRAC 1 cut(s) 438
HindII GTYRAC 1 cut(s) 438
HindIII AAGCTT 1 cut(s) 578
HinfI GANTC 1 cut(s) 530
HpaII CCGG 1 cut(s) 157
Hpy166II GTNNAC 3 cut(s) 162, 384, 438
Hpy188I TCNGA 2 cut(s) 267, 279
Hpy188III TCNNGA 4 cut(s) 13, 22, 121, 260
Hpy8I GTNNAC 3 cut(s) 162, 384, 438
Hpy99I CGWCG 2 cut(s) 62, 140
HpyAV CCTTC 5 cut(s) 19, 105, 364, 462, 598
HpyCH4III ACNGT 3 cut(s) 34, 140, 285
HpyCH4IV ACGT 2 cut(s) 178, 370
HpyCH4V TGCA 4 cut(s) 325, 384, 552, 585
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 2 cut(s) 276, 296
HpySE526I ACGT 2 cut(s) 178, 370
Hsp92II CATG 4 cut(s) 263, 310, 408, 624
HspAI GCGC 1 cut(s) 228
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 3 cut(s) 61, 262, 624
LmnI GCTCC 2 cut(s) 277, 350
LpnPI CCDG 4 cut(s) 90, 170, 170, 450
MaeI CTAG 1 cut(s) 628
MaeII ACGT 2 cut(s) 178, 370
MaeIII GTNAC 1 cut(s) 34
MalI GATC 3 cut(s) 63, 264, 626
MboI GATC 3 cut(s) 61, 262, 624
MboII GAAGA 2 cut(s) 386, 512
MflI RGATCY 1 cut(s) 624
MhlI GDGCHC 2 cut(s) 32, 386
MlsI TGGCCA 1 cut(s) 188
MluCI AATT 2 cut(s) 5, 503
MluNI TGGCCA 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 3 cut(s) 285, 423, 518
Mox20I TGGCCA 1 cut(s) 188
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 188
Msp20I TGGCCA 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 184
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 1 cut(s) 157
Mva1269I GAATGC 1 cut(s) 274
MvnI CGCG 1 cut(s) 617
MwoI GCNNNNNNNGC 1 cut(s) 350
NciI CCSGG 1 cut(s) 157
NdeII GATC 3 cut(s) 61, 262, 624
NlaIII CATG 4 cut(s) 263, 310, 408, 624
NlaIV GGNNCC 2 cut(s) 76, 352
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 1 cut(s) 310
PagI TCATGA 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PctI GAATGC 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 530
PkrI GCNGC 1 cut(s) 111
Psp1406I AACGTT 1 cut(s) 370
PspN4I GGNNCC 2 cut(s) 76, 352
PspPI GGNCC 1 cut(s) 107
PsuI RGATCY 1 cut(s) 624
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 3 cut(s) 61, 262, 624
Sau96I GGNCC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 157
SduI GDGCHC 2 cut(s) 32, 386
Sse9I AATT 2 cut(s) 5, 503
SsiI CCGC 3 cut(s) 110, 182, 304
SspMI CTAG 1 cut(s) 628
StyD4I CCNGG 1 cut(s) 155
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 3 cut(s) 34, 140, 285
TaiI ACGT 2 cut(s) 181, 373
TaqI TCGA 2 cut(s) 120, 498
TaqII GACCGA 1 cut(s) 523
TasI AATT 2 cut(s) 5, 503
TauI GCSGC 1 cut(s) 112
TfiI GAWTC 1 cut(s) 530
TscAI CASTG 2 cut(s) 327, 469
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 380
TspRI CASTG 2 cut(s) 327, 469
VneI GTGCAC 1 cut(s) 382
XapI RAATTY 2 cut(s) 5, 503
XceI RCATGY 1 cut(s) 310
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.