Rroxscaffold_3G00227920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000179
Physical Location & Seq
Reverse (-)
12183406 .. 12187329
3924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00227920.1

Sequence Viewer

Length: 306 bp
ATGTTTCGAGTGAACGGTTATGAGCATGGTCCACCGAAAGCGGTTAGGCTTCGCGTATTTGGCGGCTCACGGAGAGAAGAACGCGGACGTCCTAAACGCTTGGATTCCTCCACATTTGCTGGTGGTAGGGTCCACCGAAAGCGGTTAGGCTTCGCGTACATCGTCAAGCACTTGCGATCGTGCTTCCCATCCTTTTGTGGCCATGGCTTCTTCAAGCTCTTCAAGAAAGGGACGGTCACCATCCTCGACGATCCGGAGGACACTCAAAGTGAAGGCACTAGTACGCAGCAGTGTATCCATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.54

Weight (kDa)

10.47

Isoelectric Point (pI)

49.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 91
AccII CGCG 3 cut(s) 54, 84, 155
AccIII TCCGGA 1 cut(s) 253
AciI CCGC 4 cut(s) 41, 63, 84, 142
AclWI GGATC 1 cut(s) 245
AcoI YGGCCR 1 cut(s) 199
AcyI GRCGYC 1 cut(s) 88
AfaI GTAC 2 cut(s) 158, 283
AgsI TTSAA 2 cut(s) 214, 223
AhlI ACTAGT 1 cut(s) 278
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
AlwI GGATC 1 cut(s) 245
Aor13HI TCCGGA 1 cut(s) 253
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 286
AspS9I GGNCC 2 cut(s) 29, 130
AsuHPI GGTGA 1 cut(s) 229
AvaII GGWCC 2 cut(s) 29, 130
BalI TGGCCA 1 cut(s) 201
BbvI GCAGC 1 cut(s) 298
BccI CCATC 2 cut(s) 196, 248
BciVI GTATCC 1 cut(s) 305
BcuI ACTAGT 1 cut(s) 278
BfaI CTAG 1 cut(s) 279
BfuI GTATCC 1 cut(s) 305
BisI GCNGC 2 cut(s) 64, 287
BlsI GCNGC 2 cut(s) 65, 288
Bme18I GGWCC 2 cut(s) 29, 130
BmgT120I GGNCC 2 cut(s) 29, 130
BmiI GGNNCC 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 202
BsaWI WCCGGW 1 cut(s) 253
BseAI TCCGGA 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 2 cut(s) 188, 240
BseXI GCAGC 1 cut(s) 298
Bsh1236I CGCG 3 cut(s) 54, 84, 155
Bsh1285I CGRYCG 1 cut(s) 179
BshFI GGCC 1 cut(s) 201
BsiEI CGRYCG 1 cut(s) 179
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 1 cut(s) 201
Bsp13I TCCGGA 1 cut(s) 253
Bsp143I GATC 2 cut(s) 176, 250
Bsp19I CCATGG 1 cut(s) 202
BspACI CCGC 4 cut(s) 41, 63, 84, 142
BspANI GGCC 1 cut(s) 201
BspEI TCCGGA 1 cut(s) 253
BspFNI CGCG 3 cut(s) 54, 84, 155
BspLI GGNNCC 1 cut(s) 131
BspPI GGATC 1 cut(s) 245
BspQI GCTCTTC 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 2 cut(s) 176, 250
BssNI GRCGYC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 202
Bst4CI ACNGT 2 cut(s) 17, 235
Bst6I CTCTTC 1 cut(s) 224
BstACI GRCGYC 1 cut(s) 88
BstDSI CCRYGG 1 cut(s) 202
BstEII GGTNACC 1 cut(s) 235
BstF5I GGATG 2 cut(s) 188, 240
BstFNI CGCG 3 cut(s) 54, 84, 155
BstKTI GATC 2 cut(s) 179, 253
BstMBI GATC 2 cut(s) 176, 250
BstMCI CGRYCG 1 cut(s) 179
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstPI GGTNACC 1 cut(s) 235
BstUI CGCG 3 cut(s) 54, 84, 155
BstV1I GCAGC 1 cut(s) 298
BsuI GTATCC 1 cut(s) 305
BsuRI GGCC 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 2 cut(s) 188, 240
BtsI GCAGTG 1 cut(s) 296
BtsIMutI CAGTG 1 cut(s) 296
Cfr13I GGNCC 2 cut(s) 29, 130
Csp6I GTAC 2 cut(s) 157, 282
CviAII CATG 2 cut(s) 26, 203
CviJI RGCY 6 cut(s) 49, 66, 150, 201, 207, 217
CviKI_1 RGCY 6 cut(s) 49, 66, 150, 201, 207, 217
CviQI GTAC 2 cut(s) 157, 282
DpnI GATC 2 cut(s) 178, 252
DpnII GATC 2 cut(s) 176, 250
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 202
Eco47I GGWCC 2 cut(s) 29, 130
Eco91I GGTNACC 1 cut(s) 235
EcoO65I GGTNACC 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 202
FaeI CATG 2 cut(s) 29, 206
FaiI YATR 3 cut(s) 21, 27, 204
FaqI GGGAC 1 cut(s) 244
FatI CATG 2 cut(s) 25, 202
Fnu4HI GCNGC 2 cut(s) 64, 287
FokI GGATG 2 cut(s) 175, 227
Fsp4HI GCNGC 2 cut(s) 64, 287
FspBI CTAG 1 cut(s) 279
GluI GCNGC 2 cut(s) 64, 287
HaeIII GGCC 1 cut(s) 201
HapII CCGG 1 cut(s) 254
Hin1I GRCGYC 1 cut(s) 88
Hin1II CATG 2 cut(s) 29, 206
HinfI GANTC 1 cut(s) 104
HpaII CCGG 1 cut(s) 254
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 3 cut(s) 13, 32, 133
Hpy188III TCNNGA 2 cut(s) 223, 254
Hpy8I GTNNAC 3 cut(s) 13, 32, 133
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 2 cut(s) 17, 235
HpyCH4IV ACGT 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpySE526I ACGT 1 cut(s) 88
Hsp92I GRCGYC 1 cut(s) 88
Hsp92II CATG 2 cut(s) 29, 206
Kpn2I TCCGGA 1 cut(s) 253
Kzo9I GATC 2 cut(s) 176, 250
LguI GCTCTTC 1 cut(s) 224
LpnPI CCDG 2 cut(s) 105, 267
Lsp1109I GCAGC 1 cut(s) 298
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 235
MalI GATC 2 cut(s) 178, 252
MboI GATC 2 cut(s) 176, 250
MboII GAAGA 3 cut(s) 89, 202, 211
MlsI TGGCCA 1 cut(s) 201
MluNI TGGCCA 1 cut(s) 201
MnlI CCTC 3 cut(s) 118, 250, 254
Mox20I TGGCCA 1 cut(s) 201
MroI TCCGGA 1 cut(s) 253
MscI TGGCCA 1 cut(s) 201
Msp20I TGGCCA 1 cut(s) 201
MspI CCGG 1 cut(s) 254
MvnI CGCG 3 cut(s) 54, 84, 155
MwoI GCNNNNNNNGC 1 cut(s) 60
NcoI CCATGG 1 cut(s) 202
NdeII GATC 2 cut(s) 176, 250
NlaIII CATG 2 cut(s) 29, 206
NlaIV GGNNCC 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 224
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 2 cut(s) 65, 288
Ple19I CGATCG 1 cut(s) 179
PspEI GGTNACC 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 131
PspPI GGNCC 2 cut(s) 29, 130
PvuI CGATCG 1 cut(s) 179
RsaI GTAC 2 cut(s) 158, 283
RsaNI GTAC 2 cut(s) 157, 282
SapI GCTCTTC 1 cut(s) 224
SatI GCNGC 2 cut(s) 64, 287
Sau3AI GATC 2 cut(s) 176, 250
Sau96I GGNCC 2 cut(s) 29, 130
SetI ASST 2 cut(s) 91, 219
SinI GGWCC 2 cut(s) 29, 130
SpeI ACTAGT 1 cut(s) 278
SsiI CCGC 4 cut(s) 41, 63, 84, 142
SspMI CTAG 1 cut(s) 279
StyI CCWWGG 1 cut(s) 202
TaaI ACNGT 2 cut(s) 17, 235
TaiI ACGT 1 cut(s) 91
TaqI TCGA 2 cut(s) 7, 246
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 1 cut(s) 104
TscAI CASTG 1 cut(s) 296
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 235
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 1 cut(s) 296
VpaK11BI GGWCC 2 cut(s) 29, 130
XspI CTAG 1 cut(s) 279
ZraI GACGTC 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.