FvH4_1g29681

Galactose oxidase, central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000179
Physical Location & Seq
Reverse (-)
22983721 .. 22984322
602 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29681.t1

Sequence Viewer

Length: 510 bp
ATGGCATCCTCTGAAGTCACCCTTGGTGGAGTTGATGTTGTGGATACCAACCAGGTGCTCCGAAAGATTCGTATGCAGGTTGCCGCTCAAATTTGTGAACAAATTGAAGGCATCATAACGAAGCACTTGTTGAAGACCATTCTTTCTAAGAAGAAAGACCTTGACGAGATGGTGGCCGAGCTTCAATTTTATGGGGTTGATCCTGCATCAGTAAAAGACAAGGTGGATAGCTCTATGACTAGCGCTACTCAATACAACGCAACAAGGCTTGCATGCTCGCAAAAAGCTACTCTAGGCACATGTGATCAACGTTTCATTCGCACGGCATCTAAAATTGCAAAGTCTGTCGGACTCCGGGAAACCAACCTTGAGAAGGAGAGGGCCCAAATCAAGGAAACTCCAAAGTCGACTGCTAAGGAGCTTGAGGAAGCAATGAAGTTGAGAGATATTTTTGAAGAGCAGCACAACAGCTTCAAGGGTCTAACGTGGATGTGGAAAGAAACTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04212 ko05168 map04212 map05168
Pfam Domains
Protein Families
Kelch_3 Kelch_4 Kelch_5

Protein Analysis

170

Amino Acids

19.0

Weight (kDa)

8.3

Isoelectric Point (pI)

23.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 67
AccBSI CCGCTC 1 cut(s) 86
AccI GTMKAC 1 cut(s) 407
AciI CCGC 1 cut(s) 84
AclI AACGTT 1 cut(s) 310
AclWI GGATC 1 cut(s) 194
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 1 cut(s) 90
AcuI CTGAAG 1 cut(s) 33
AfeI AGCGCT 1 cut(s) 244
AfiI CCNNNNNNNGG 2 cut(s) 373, 391
AflIII ACRYGT 1 cut(s) 299
AgsI TTSAA 5 cut(s) 107, 133, 185, 455, 475
AjnI CCWGG 1 cut(s) 51
AjuI GAANNNNNNNTTGG 1 cut(s) 38
AluBI AGCT 5 cut(s) 181, 231, 287, 421, 471
AluI AGCT 5 cut(s) 181, 231, 287, 421, 471
Alw21I GWGCWC 1 cut(s) 60
AlwI GGATC 1 cut(s) 194
Aor51HI AGCGCT 1 cut(s) 244
AoxI GGCC 2 cut(s) 174, 381
ApaI GGGCCC 1 cut(s) 385
ApeKI GCWGC 1 cut(s) 460
ApoI RAATTY 1 cut(s) 90
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 2 cut(s) 381, 382
AsuC2I CCSGG 1 cut(s) 356
AsuHPI GGTGA 1 cut(s) 10
BaeGI GKGCMC 1 cut(s) 385
BanII GRGCYC 1 cut(s) 385
BbsI GAAGAC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 472
BccI CCATC 1 cut(s) 163
BceAI ACGGC 1 cut(s) 339
BciT130I CCWGG 1 cut(s) 53
BciVI GTATCC 1 cut(s) 37
BclI TGATCA 1 cut(s) 304
BcnI CCSGG 1 cut(s) 356
BfaI CTAG 2 cut(s) 240, 293
BfoI RGCGCY 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 67
BfuI GTATCC 1 cut(s) 37
BisI GCNGC 2 cut(s) 84, 461
BlsI GCNGC 2 cut(s) 85, 462
Bme1390I CCNGG 2 cut(s) 53, 356
BmgT120I GGNCC 2 cut(s) 381, 382
BmiI GGNNCC 1 cut(s) 383
BmrFI CCNGG 2 cut(s) 53, 356
BmsI GCATC 4 cut(s) 14, 120, 215, 335
BpiI GAAGAC 1 cut(s) 140
Bpu10I CCTNAGC 1 cut(s) 414
BpuEI CTTGAG 2 cut(s) 389, 443
BpuMI CCSGG 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 22
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 391
Bse3DI GCAATG 1 cut(s) 438
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 2 cut(s) 5, 495
BseLI CCNNNNNNNGG 2 cut(s) 373, 391
BseMI GCAATG 1 cut(s) 438
BseSI GKGCMC 1 cut(s) 385
BseXI GCAGC 1 cut(s) 472
BshFI GGCC 2 cut(s) 176, 383
BsiHKAI GWGCWC 1 cut(s) 60
BsiSI CCGG 1 cut(s) 355
BslI CCNNNNNNNGG 2 cut(s) 373, 391
BsnI GGCC 2 cut(s) 176, 383
Bsp120I GGGCCC 1 cut(s) 381
Bsp1286I GDGCHC 2 cut(s) 60, 385
Bsp143I GATC 2 cut(s) 199, 304
BspACI CCGC 1 cut(s) 84
BspANI GGCC 2 cut(s) 176, 383
BspLI GGNNCC 1 cut(s) 383
BspMI ACCTGC 1 cut(s) 67
BspPI GGATC 1 cut(s) 194
BspQI GCTCTTC 1 cut(s) 450
BsrBI CCGCTC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 438
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 2 cut(s) 199, 304
BssT1I CCWWGG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 450
BstC8I GCNNGC 3 cut(s) 270, 274, 278
BstDEI CTNAG 2 cut(s) 147, 414
BstENI CCTNNNNNAGG 1 cut(s) 371
BstF5I GGATG 2 cut(s) 5, 495
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 2 cut(s) 202, 307
BstMBI GATC 2 cut(s) 199, 304
BstNI CCWGG 1 cut(s) 53
BstNSI RCATGY 2 cut(s) 276, 303
BstSCI CCNGG 2 cut(s) 51, 354
BstSLI GKGCMC 1 cut(s) 385
BstV1I GCAGC 1 cut(s) 472
BstV2I GAAGAC 1 cut(s) 140
BsuI GTATCC 1 cut(s) 37
BsuRI GGCC 2 cut(s) 176, 383
BtsCI GGATG 2 cut(s) 5, 495
BveI ACCTGC 1 cut(s) 67
Cac8I GCNNGC 3 cut(s) 270, 274, 278
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 2 cut(s) 381, 382
CsiI ACCWGGT 1 cut(s) 51
CviAII CATG 2 cut(s) 273, 300
CviJI RGCY 8 cut(s) 176, 181, 231, 268, 287, 383, 421, 471
CviKI_1 RGCY 8 cut(s) 176, 181, 231, 268, 287, 383, 421, 471
DdeI CTNAG 2 cut(s) 147, 414
DpnI GATC 2 cut(s) 201, 306
DpnII GATC 2 cut(s) 199, 304
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
Eco130I CCWWGG 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 385
Eco47III AGCGCT 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 33
EcoNI CCTNNNNNAGG 1 cut(s) 371
EcoO109I RGGNCCY 1 cut(s) 381
EcoRII CCWGG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 22
EcoT38I GRGCYC 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 2 cut(s) 276, 303
FaiI YATR 6 cut(s) 74, 116, 192, 236, 274, 301
FalI AAGNNNNNCTT 1 cut(s) 38
FatI CATG 2 cut(s) 272, 299
FbaI TGATCA 1 cut(s) 304
FblI GTMKAC 1 cut(s) 407
Fnu4HI GCNGC 2 cut(s) 84, 461
FokI GGATG 1 cut(s) 502
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 2 cut(s) 84, 461
FspBI CTAG 2 cut(s) 240, 293
GlaI GCGC 1 cut(s) 244
GluI GCNGC 2 cut(s) 84, 461
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 2 cut(s) 176, 383
HapII CCGG 1 cut(s) 355
HhaI GCGC 1 cut(s) 245
Hin1II CATG 2 cut(s) 276, 303
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HincII GTYRAC 1 cut(s) 408
HindII GTYRAC 1 cut(s) 408
HinfI GANTC 2 cut(s) 67, 351
HpaII CCGG 1 cut(s) 355
HphI GGTGA 1 cut(s) 10
Hpy166II GTNNAC 2 cut(s) 98, 408
Hpy188I TCNGA 3 cut(s) 13, 62, 350
Hpy8I GTNNAC 2 cut(s) 98, 408
HpyAV CCTTC 2 cut(s) 101, 367
HpyCH4IV ACGT 2 cut(s) 310, 485
HpyCH4V TGCA 4 cut(s) 76, 206, 272, 338
HpyF3I CTNAG 2 cut(s) 147, 414
HpySE526I ACGT 2 cut(s) 310, 485
Hsp92II CATG 2 cut(s) 276, 303
HspAI GCGC 1 cut(s) 243
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 2 cut(s) 199, 304
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 2 cut(s) 63, 418
LpnPI CCDG 5 cut(s) 38, 62, 65, 216, 368
Lsp1109I GCAGC 1 cut(s) 472
LweI GCATC 4 cut(s) 14, 120, 215, 335
MabI ACCWGGT 1 cut(s) 51
MaeI CTAG 2 cut(s) 240, 293
MaeII ACGT 2 cut(s) 310, 485
MaeIII GTNAC 1 cut(s) 16
MalI GATC 2 cut(s) 201, 306
MbiI CCGCTC 1 cut(s) 86
MboI GATC 2 cut(s) 199, 304
MboII GAAGA 3 cut(s) 145, 163, 467
MhlI GDGCHC 2 cut(s) 60, 385
MluCI AATT 4 cut(s) 90, 102, 185, 333
MlyI GAGTC 1 cut(s) 345
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 3 cut(s) 19, 372, 418
MspI CCGG 1 cut(s) 355
MspR9I CCNGG 2 cut(s) 53, 356
MvaI CCWGG 1 cut(s) 53
NciI CCSGG 1 cut(s) 356
NdeII GATC 2 cut(s) 199, 304
NlaIII CATG 2 cut(s) 276, 303
NlaIV GGNNCC 1 cut(s) 383
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 16
NspI RCATGY 2 cut(s) 276, 303
PaeI GCATGC 1 cut(s) 276
PciI ACATGT 1 cut(s) 299
PciSI GCTCTTC 1 cut(s) 450
PfeI GAWTC 1 cut(s) 67
PfoI TCCNGGA 1 cut(s) 354
PkrI GCNGC 2 cut(s) 85, 462
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
PscI ACATGT 1 cut(s) 299
Psp1406I AACGTT 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 383
PspOMI GGGCCC 1 cut(s) 381
PspPI GGNCC 2 cut(s) 381, 382
SalI GTCGAC 1 cut(s) 406
SapI GCTCTTC 1 cut(s) 450
SatI GCNGC 2 cut(s) 84, 461
Sau3AI GATC 2 cut(s) 199, 304
Sau96I GGNCC 2 cut(s) 381, 382
SchI GAGTC 1 cut(s) 345
ScrFI CCNGG 2 cut(s) 53, 356
SduI GDGCHC 2 cut(s) 60, 385
SexAI ACCWGGT 1 cut(s) 51
SfaNI GCATC 4 cut(s) 14, 120, 215, 335
SmlI CTYRAG 2 cut(s) 368, 422
SmoI CTYRAG 2 cut(s) 368, 422
SphI GCATGC 1 cut(s) 276
Sse9I AATT 4 cut(s) 90, 102, 185, 333
SsiI CCGC 1 cut(s) 84
SspMI CTAG 2 cut(s) 240, 293
StyD4I CCNGG 2 cut(s) 51, 354
StyI CCWWGG 1 cut(s) 22
TaiI ACGT 2 cut(s) 313, 488
TaqI TCGA 1 cut(s) 407
TasI AATT 4 cut(s) 90, 102, 185, 333
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 1 cut(s) 67
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 1 cut(s) 460
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 304, 449
XagI CCTNNNNNAGG 1 cut(s) 371
XapI RAATTY 1 cut(s) 90
XceI RCATGY 2 cut(s) 276, 303
XmiI GTMKAC 1 cut(s) 407
XspI CTAG 2 cut(s) 240, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.