Rroxscaffold_5G00338240

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000179
Physical Location & Seq
Forward (+)
6426999 .. 6430402
3404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00338240.1

Sequence Viewer

Length: 405 bp
ATGAACTTCGTAGACCTTGCAGTATTTGATAACTTAGGCATGGATGGTGAAGATATAGAGCCCACCTATTTGGCTGCCTTTCTTGCTTCTTGGTTGTGCCTGTTGGTTTTACCTAGAGAGAACACCGGTTTGATTTGTTCGGGAGTATTCAAAGTTGCCGGCAAAATGTCACAAGGTGTACGTTTTGCCCGCAATACTAGTGTTGGCCAGCATTTATCGGGGTTTGAGCGAGATTTCTGTTTCCGGGCGATCCAATTCCCAAACTCAATCGAACCTTCGGTCGGCCTTCATGATGGCTGTTGTAGGGAAAATGGTGGAAGCCAATTGATGGATGGCCGCATTGCTGGTGATTTGGTGGATAGAAGACTGGGAAAAATGGCTACTAAGTTGCTGTATTTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

134

Amino Acids

14.71

Weight (kDa)

5.61

Isoelectric Point (pI)

32.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 328
AccI GTMKAC 1 cut(s) 12
AciI CCGC 2 cut(s) 190, 337
AclWI GGATC 1 cut(s) 244
AcoI YGGCCR 2 cut(s) 205, 334
AdeI CACNNNGTG 1 cut(s) 176
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 2 cut(s) 281, 328
AgeI ACCGGT 1 cut(s) 125
AgsI TTSAA 2 cut(s) 151, 400
AhlI ACTAGT 1 cut(s) 197
AlwI GGATC 1 cut(s) 244
AoxI GGCC 3 cut(s) 205, 283, 334
ApeKI GCWGC 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
AsiGI ACCGGT 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 2 cut(s) 59, 359
BalI TGGCCA 1 cut(s) 207
BanII GRGCYC 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 370
BbvI GCAGC 1 cut(s) 61
BccI CCATC 4 cut(s) 38, 287, 322, 326
BcnI CCSGG 1 cut(s) 245
BcuI ACTAGT 1 cut(s) 197
BfaI CTAG 2 cut(s) 114, 198
BisI GCNGC 2 cut(s) 75, 337
BlsI GCNGC 2 cut(s) 76, 338
Bme1390I CCNGG 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 245
BmrI ACTGGG 1 cut(s) 377
BmuI ACTGGG 1 cut(s) 377
BpiI GAAGAC 1 cut(s) 370
BpuMI CCSGG 1 cut(s) 245
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 328
Bse118I RCCGGY 2 cut(s) 125, 158
Bse1I ACTGG 1 cut(s) 372
Bse3DI GCAATG 1 cut(s) 339
BseGI GGATG 2 cut(s) 49, 337
BseLI CCNNNNNNNGG 2 cut(s) 281, 328
BseMI GCAATG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 372
BseXI GCAGC 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 282
BshFI GGCC 3 cut(s) 207, 285, 336
BshTI ACCGGT 1 cut(s) 125
BsiEI CGRYCG 1 cut(s) 282
BsiSI CCGG 3 cut(s) 126, 159, 244
BslI CCNNNNNNNGG 2 cut(s) 281, 328
BsnI GGCC 3 cut(s) 207, 285, 336
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 1 cut(s) 249
BspACI CCGC 2 cut(s) 190, 337
BspANI GGCC 3 cut(s) 207, 285, 336
BspHI TCATGA 1 cut(s) 289
BspPI GGATC 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 339
BsrFI RCCGGY 2 cut(s) 125, 158
BsrI ACTGG 1 cut(s) 372
BssAI RCCGGY 2 cut(s) 125, 158
BssMI GATC 1 cut(s) 249
BstC8I GCNNGC 3 cut(s) 160, 190, 209
BstDEI CTNAG 2 cut(s) 34, 384
BstF5I GGATG 2 cut(s) 49, 337
BstKTI GATC 1 cut(s) 252
BstMBI GATC 1 cut(s) 249
BstMCI CGRYCG 1 cut(s) 282
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 370
BstXI CCANNNNNNTGG 1 cut(s) 70
BsuRI GGCC 3 cut(s) 207, 285, 336
BtsCI GGATG 2 cut(s) 49, 337
Cac8I GCNNGC 3 cut(s) 160, 190, 209
CciI TCATGA 1 cut(s) 289
Cfr10I RCCGGY 2 cut(s) 125, 158
Csp6I GTAC 1 cut(s) 179
CspAI ACCGGT 1 cut(s) 125
CviAII CATG 2 cut(s) 40, 290
CviJI RGCY 8 cut(s) 61, 74, 207, 285, 297, 321, 336, 380
CviKI_1 RGCY 8 cut(s) 61, 74, 207, 285, 297, 321, 336, 380
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 2 cut(s) 34, 384
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
DraIII CACNNNGTG 1 cut(s) 176
EaeI YGGCCR 2 cut(s) 205, 334
Eco24I GRGCYC 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 63
FaeI CATG 2 cut(s) 43, 293
FaiI YATR 3 cut(s) 41, 56, 291
FatI CATG 2 cut(s) 39, 289
FauI CCCGC 1 cut(s) 197
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 75, 337
FokI GGATG 2 cut(s) 56, 344
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 2 cut(s) 75, 337
FspBI CTAG 2 cut(s) 114, 198
GluI GCNGC 2 cut(s) 75, 337
HaeIII GGCC 3 cut(s) 207, 285, 336
HapII CCGG 3 cut(s) 126, 159, 244
Hin1II CATG 2 cut(s) 43, 293
HpaII CCGG 3 cut(s) 126, 159, 244
HphI GGTGA 2 cut(s) 59, 359
Hpy166II GTNNAC 2 cut(s) 13, 179
Hpy188III TCNNGA 2 cut(s) 141, 290
Hpy8I GTNNAC 2 cut(s) 13, 179
HpyAV CCTTC 2 cut(s) 285, 296
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 2 cut(s) 34, 384
HpySE526I ACGT 1 cut(s) 181
Hsp92II CATG 2 cut(s) 43, 293
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
Kzo9I GATC 1 cut(s) 249
LpnPI CCDG 7 cut(s) 113, 139, 172, 221, 257, 330, 353
Lsp1109I GCAGC 1 cut(s) 61
MaeI CTAG 2 cut(s) 114, 198
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 1 cut(s) 168
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MboII GAAGA 2 cut(s) 62, 375
MfeI CAATTG 1 cut(s) 323
MhlI GDGCHC 1 cut(s) 63
MlsI TGGCCA 1 cut(s) 207
MluCI AATT 3 cut(s) 254, 323, 400
MluNI TGGCCA 1 cut(s) 207
Mox20I TGGCCA 1 cut(s) 207
MroNI GCCGGC 1 cut(s) 158
MscI TGGCCA 1 cut(s) 207
Msp20I TGGCCA 1 cut(s) 207
MspI CCGG 3 cut(s) 126, 159, 244
MspR9I CCNGG 1 cut(s) 245
MunI CAATTG 1 cut(s) 323
MwoI GCNNNNNNNGC 1 cut(s) 83
NaeI GCCGGC 1 cut(s) 160
NciI CCSGG 1 cut(s) 245
NdeII GATC 1 cut(s) 249
NgoMIV GCCGGC 1 cut(s) 158
NlaIII CATG 2 cut(s) 43, 293
NmuCI GTSAC 1 cut(s) 168
PagI TCATGA 1 cut(s) 289
PdiI GCCGGC 1 cut(s) 160
PflMI CCANNNNNTGG 1 cut(s) 328
PinAI ACCGGT 1 cut(s) 125
PkrI GCNGC 2 cut(s) 76, 338
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
SatI GCNGC 2 cut(s) 75, 337
Sau3AI GATC 1 cut(s) 249
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 1 cut(s) 63
SetI ASST 6 cut(s) 18, 68, 115, 178, 184, 277
SpeI ACTAGT 1 cut(s) 197
Sse9I AATT 3 cut(s) 254, 323, 400
SsiI CCGC 2 cut(s) 190, 337
SspMI CTAG 2 cut(s) 114, 198
StyD4I CCNGG 1 cut(s) 243
TaiI ACGT 1 cut(s) 184
TaqI TCGA 1 cut(s) 270
TaqII GACCGA 1 cut(s) 268
TasI AATT 3 cut(s) 254, 323, 400
TauI GCSGC 1 cut(s) 339
TseFI GTSAC 1 cut(s) 168
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 168
TspDTI ATGAA 2 cut(s) 17, 278
Van91I CCANNNNNTGG 1 cut(s) 328
XcmI CCANNNNNNNNNTGG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 12
XspI CTAG 2 cut(s) 114, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.