pycom09g13510

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000179
Physical Location & Seq
Forward (+)
12352956 .. 12353750
795 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g13510.1

Sequence Viewer

Length: 795 bp
ATGGTATTTTTCAAGTGTTTTAAGAGCAACACCATCACCATTCTCGCGAAGGAAAGTGATTCGCAAGATAGGGGAACAACGCTGAAGATTTACGCCCCACTGACTGGCCTTAAGGCGCTTGCTCTTCCTACAAAAGACAACTCCATGCATATTAAGTCGTGGTCTTCTGAAGTATCTTGGGAGGTGGCAGACTTTGTTCGATCAAATACGGAGAAGAAGGCGTGCACACTGAGGATTCTTATCTTGAACCCTTCGCACCATGCTCATGACAATCATCCGGCTTCATTTAAGCTTCTCGGTGATCACATCTGCAGCGGAGCTATGGCTTGGAATGATGTCTTGTCGACTACCGGAGAAGCTGTTTTTGCTGAGTCTTATTGGGAGTGGCTTGAAGATGTCTTGGGCCGATCTAAACATGTGCTTACTAGCGTGGGCCTTTACCATGCCGTGTACGCATCTTTGTTCAGTTATGATCTTCATCATTCCGTCCTTCATGCGTCCTTCGAGCATTGGTGTTCAGCGACTAACACGCTTCATACAGCTCAAGGAGAGATGTCAATTTCACTTTGGGATCTCCACAAGATAGGGGGCTTGCCAATCCAAGGTAAGTTTTATGACGAGGTCGTTCTTAGTGTGGAGGAACTTTCTCTCTGCAATAACCGAGGATTGCCTACGAGTTGTCGCTGTTTATTTTGGGCATATCACAAGCTTTCCCAAGATGCTAGAGGTAAAGCAGGCGTGAAGATTTCTTCATGGATCTGCTTCTGGTATTGGGAGGACACAAGGTACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

265

Amino Acids

29.9

Weight (kDa)

6.72

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 145 - 203 2.5e-09 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 104
AccI GTMKAC 1 cut(s) 344
AccII CGCG 1 cut(s) 47
AciI CCGC 1 cut(s) 315
AclWI GGATC 2 cut(s) 579, 764
AcuI CTGAAG 2 cut(s) 104, 189
AfaI GTAC 2 cut(s) 452, 788
AfiI CCNNNNNNNGG 2 cut(s) 104, 602
AflII CTTAAG 1 cut(s) 110
AflIII ACRYGT 1 cut(s) 415
AgsI TTSAA 3 cut(s) 13, 247, 392
AluBI AGCT 5 cut(s) 292, 320, 359, 542, 709
AluI AGCT 5 cut(s) 292, 320, 359, 542, 709
Alw21I GWGCWC 1 cut(s) 227
Alw44I GTGCAC 1 cut(s) 223
AlwI GGATC 2 cut(s) 579, 764
AoxI GGCC 3 cut(s) 106, 403, 433
ApaLI GTGCAC 1 cut(s) 223
ApeKI GCWGC 1 cut(s) 312
AspLEI GCGC 1 cut(s) 118
AspS9I GGNCC 2 cut(s) 403, 433
AsuHPI GGTGA 2 cut(s) 28, 311
BaeGI GKGCMC 1 cut(s) 227
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 324
BccI CCATC 1 cut(s) 41
BceAI ACGGC 1 cut(s) 431
BclI TGATCA 1 cut(s) 301
BfaI CTAG 2 cut(s) 426, 723
BfmI CTRYAG 1 cut(s) 310
BfoI RGCGCY 1 cut(s) 119
BfrI CTTAAG 1 cut(s) 110
BisI GCNGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 314
BmgT120I GGNCC 2 cut(s) 403, 433
BmsI GCATC 2 cut(s) 464, 709
BpiI GAAGAC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 528
BsaBI GATNNNNATC 2 cut(s) 239, 477
BsaJI CCNNGG 2 cut(s) 601, 661
BsaWI WCCGGW 1 cut(s) 350
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 602
Bse1I ACTGG 1 cut(s) 109
Bse8I GATNNNNATC 2 cut(s) 239, 477
BseDI CCNNGG 2 cut(s) 601, 661
BseGI GGATG 1 cut(s) 274
BseJI GATNNNNATC 2 cut(s) 239, 477
BseLI CCNNNNNNNGG 2 cut(s) 104, 602
BseMII CTCAG 2 cut(s) 221, 360
BseNI ACTGG 1 cut(s) 109
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 1 cut(s) 324
Bsh1236I CGCG 1 cut(s) 47
BshFI GGCC 3 cut(s) 108, 405, 435
BsiHKAI GWGCWC 1 cut(s) 227
BsiSI CCGG 2 cut(s) 278, 351
BslI CCNNNNNNNGG 2 cut(s) 104, 602
BsnI GGCC 3 cut(s) 108, 405, 435
Bsp1286I GDGCHC 1 cut(s) 227
Bsp143I GATC 6 cut(s) 200, 301, 407, 472, 571, 756
Bsp68I TCGCGA 1 cut(s) 47
BspACI CCGC 1 cut(s) 315
BspANI GGCC 3 cut(s) 108, 405, 435
BspCNI CTCAG 2 cut(s) 222, 361
BspFNI CGCG 1 cut(s) 47
BspHI TCATGA 1 cut(s) 265
BspMAI CTGCAG 1 cut(s) 314
BspPI GGATC 2 cut(s) 579, 764
BspQI GCTCTTC 1 cut(s) 129
BspTI CTTAAG 1 cut(s) 110
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 2 cut(s) 601, 661
BssMI GATC 6 cut(s) 200, 301, 407, 472, 571, 756
BssT1I CCWWGG 1 cut(s) 601
Bst6I CTCTTC 1 cut(s) 129
BstAFI CTTAAG 1 cut(s) 110
BstC8I GCNNGC 4 cut(s) 120, 223, 593, 736
BstDEI CTNAG 3 cut(s) 230, 369, 629
BstF5I GGATG 1 cut(s) 274
BstFNI CGCG 1 cut(s) 47
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 6 cut(s) 203, 304, 410, 475, 574, 759
BstMBI GATC 6 cut(s) 200, 301, 407, 472, 571, 756
BstMWI GCNNNNNNNGC 2 cut(s) 365, 452
BstNSI RCATGY 1 cut(s) 419
BstSFI CTRYAG 1 cut(s) 310
BstSLI GKGCMC 1 cut(s) 227
BstUI CGCG 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 324
BstV2I GAAGAC 1 cut(s) 156
BstX2I RGATCY 2 cut(s) 571, 756
BstYI RGATCY 2 cut(s) 571, 756
BsuRI GGCC 3 cut(s) 108, 405, 435
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 2 cut(s) 98, 227
BtuMI TCGCGA 1 cut(s) 47
Cac8I GCNNGC 4 cut(s) 120, 223, 593, 736
CciI TCATGA 1 cut(s) 265
CfoI GCGC 1 cut(s) 118
Cfr13I GGNCC 2 cut(s) 403, 433
CseI GACGC 1 cut(s) 486
Csp6I GTAC 2 cut(s) 451, 787
CviAII CATG 7 cut(s) 145, 260, 266, 416, 443, 494, 753
CviQI GTAC 2 cut(s) 451, 787
DdeI CTNAG 3 cut(s) 230, 369, 629
DpnI GATC 6 cut(s) 202, 303, 409, 474, 573, 758
DpnII GATC 6 cut(s) 200, 301, 407, 472, 571, 756
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 601
Eco57I CTGAAG 2 cut(s) 104, 189
EcoT14I CCWWGG 1 cut(s) 601
EcoT22I ATGCAT 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 601
FaeI CATG 7 cut(s) 148, 263, 269, 419, 446, 497, 756
FatI CATG 7 cut(s) 144, 259, 265, 415, 442, 493, 752
FbaI TGATCA 1 cut(s) 301
FblI GTMKAC 1 cut(s) 344
Fnu4HI GCNGC 1 cut(s) 313
FokI GGATG 1 cut(s) 261
Fsp4HI GCNGC 1 cut(s) 313
FspBI CTAG 2 cut(s) 426, 723
GlaI GCGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 313
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 3 cut(s) 108, 405, 435
HapII CCGG 2 cut(s) 278, 351
HgaI GACGC 1 cut(s) 486
HhaI GCGC 1 cut(s) 118
Hin1II CATG 7 cut(s) 148, 263, 269, 419, 446, 497, 756
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HindIII AAGCTT 2 cut(s) 290, 707
HinfI GANTC 3 cut(s) 59, 235, 371
HpaII CCGG 2 cut(s) 278, 351
HphI GGTGA 2 cut(s) 28, 311
Hpy166II GTNNAC 3 cut(s) 225, 345, 451
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 3 cut(s) 46, 244, 266
Hpy8I GTNNAC 3 cut(s) 225, 345, 451
HpyAV CCTTC 5 cut(s) 43, 211, 261, 500, 511
HpyCH4V TGCA 4 cut(s) 148, 225, 312, 654
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 452
HpyF3I CTNAG 3 cut(s) 230, 369, 629
Hsp92II CATG 7 cut(s) 148, 263, 269, 419, 446, 497, 756
HspAI GCGC 1 cut(s) 116
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 6 cut(s) 200, 301, 407, 472, 571, 756
LguI GCTCTTC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 5 cut(s) 90, 291, 364, 720, 751
Lsp1109I GCAGC 1 cut(s) 324
LweI GCATC 2 cut(s) 464, 709
MaeI CTAG 2 cut(s) 426, 723
MalI GATC 6 cut(s) 202, 303, 409, 474, 573, 758
MboI GATC 6 cut(s) 200, 301, 407, 472, 571, 756
MboII GAAGA 8 cut(s) 97, 116, 156, 226, 404, 467, 741, 754
MflI RGATCY 2 cut(s) 571, 756
MhlI GDGCHC 1 cut(s) 227
MluCI AATT 1 cut(s) 558
MlyI GAGTC 1 cut(s) 380
MnlI CCTC 7 cut(s) 175, 225, 613, 631, 656, 719, 769
Mph1103I ATGCAT 1 cut(s) 150
MseI TTAA 4 cut(s) 21, 111, 153, 288
MslI CAYNNNNRTG 1 cut(s) 264
MspA1I CMGCKG 1 cut(s) 315
MspCI CTTAAG 1 cut(s) 110
MspI CCGG 2 cut(s) 278, 351
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 2 cut(s) 365, 452
NdeII GATC 6 cut(s) 200, 301, 407, 472, 571, 756
NlaIII CATG 7 cut(s) 148, 263, 269, 419, 446, 497, 756
NruI TCGCGA 1 cut(s) 47
NsiI ATGCAT 1 cut(s) 150
NspI RCATGY 1 cut(s) 419
PagI TCATGA 1 cut(s) 265
PciI ACATGT 1 cut(s) 415
PciSI GCTCTTC 1 cut(s) 129
PfeI GAWTC 2 cut(s) 59, 235
PflFI GACNNNGTC 1 cut(s) 620
PflMI CCANNNNNTGG 1 cut(s) 104
PkrI GCNGC 1 cut(s) 314
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
PscI ACATGT 1 cut(s) 415
PspPI GGNCC 2 cut(s) 403, 433
PstI CTGCAG 1 cut(s) 314
PsuI RGATCY 2 cut(s) 571, 756
PsyI GACNNNGTC 1 cut(s) 620
RruI TCGCGA 1 cut(s) 47
RsaI GTAC 2 cut(s) 452, 788
RsaNI GTAC 2 cut(s) 451, 787
RseI CAYNNNNRTG 1 cut(s) 264
SalI GTCGAC 1 cut(s) 343
SapI GCTCTTC 1 cut(s) 129
SaqAI TTAA 4 cut(s) 21, 111, 153, 288
SatI GCNGC 1 cut(s) 313
Sau3AI GATC 6 cut(s) 200, 301, 407, 472, 571, 756
Sau96I GGNCC 2 cut(s) 403, 433
SchI GAGTC 1 cut(s) 380
SduI GDGCHC 1 cut(s) 227
SfaNI GCATC 2 cut(s) 464, 709
SfcI CTRYAG 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 264
SmlI CTYRAG 2 cut(s) 110, 543
SmoI CTYRAG 2 cut(s) 110, 543
Sse9I AATT 1 cut(s) 558
SsiI CCGC 1 cut(s) 315
SspMI CTAG 2 cut(s) 426, 723
StyI CCWWGG 1 cut(s) 601
TaqI TCGA 3 cut(s) 199, 344, 504
TasI AATT 1 cut(s) 558
TfiI GAWTC 2 cut(s) 59, 235
Tru1I TTAA 4 cut(s) 21, 111, 153, 288
Tru9I TTAA 4 cut(s) 21, 111, 153, 288
TscAI CASTG 2 cut(s) 105, 234
TseI GCWGC 1 cut(s) 312
TspDTI ATGAA 5 cut(s) 273, 467, 482, 524, 741
TspGWI ACGGA 2 cut(s) 224, 475
TspRI CASTG 2 cut(s) 105, 234
Tth111I GACNNNGTC 1 cut(s) 620
Van91I CCANNNNNTGG 1 cut(s) 104
Vha464I CTTAAG 1 cut(s) 110
VneI GTGCAC 1 cut(s) 223
XceI RCATGY 1 cut(s) 419
XmiI GTMKAC 1 cut(s) 344
XspI CTAG 2 cut(s) 426, 723
Zsp2I ATGCAT 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.