Rroxscaffold_5G00342700

Galactose oxidase, central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000179
Physical Location & Seq
Forward (+)
11815973 .. 11818628
2656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342700.1

Sequence Viewer

Length: 723 bp
ATGGCTTTCTTCAAGTGCTTCAAGAAAGGGACAATCACCATCCTCGAGGATCCGGAGGACGCTCAAAAAGTGATGGAACTACTGCAAGTGCACCCGTCGTTGATCGGGCCTCGAGCAATCGATGTCCCTCCTTATGACCCTTCGGCTCACATCCTCCGGTGGACTCATGTAGTACCTCGCCGGTGGCTATGTTCCGACAACCGAGATCCGGAAGGGACCAACAAAACTCGCATCGAGTACTTCGGCACCCACTTTCGGTCTCCACTTCCCAACGACCTAAGGCCCCGTATGGTTCGTTTCTCCGCAGAACTTTCGGCTAGGCATTTTGGAGACTCACGGGCTCTTTCTTTGTTTGACACATGTGATAATGTGAAGATGGGTGTATTTGCCGGGAGATTGATGGGCATCCACTTTGGGGAAACGATGACACCTCTTCGGACCCTATACGTGTTCCTTCGCGGCGAACTTGAGGCTTACTCTTTATCCGCGAAAGGAACATCCAATGCGAGGAATGACCCACGACAAGTTGACCCTACGGCCTCTCTTGGTGGAGCTGCTATTATAGATGCCGACCAAAGACTTCGTGATATTCGTCAACAAGTCGCTACTGCAGTTTGTGAACAAATTGAGGATATGATAATGAAGCATTCCTCAAAGACCATTCTTTCCGGCAAGGGGGAACTTGACAAGCCGATAGCCGAGCTTAGCTTTGTATGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04212 ko05168 map04212 map05168
Pfam Domains
Protein Families
Kelch_3 Kelch_4 Kelch_5

Protein Analysis

240

Amino Acids

27.05

Weight (kDa)

7.06

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 44
AccB1I GGYRCC 1 cut(s) 245
AccII CGCG 2 cut(s) 459, 488
AccIII TCCGGA 2 cut(s) 52, 208
AciI CCGC 3 cut(s) 303, 459, 486
AclWI GGATC 3 cut(s) 44, 57, 200
AfaI GTAC 2 cut(s) 174, 239
AfiI CCNNNNNNNGG 5 cut(s) 208, 255, 415, 507, 675
AflIII ACRYGT 2 cut(s) 359, 447
AgsI TTSAA 2 cut(s) 13, 22
AluBI AGCT 3 cut(s) 554, 703, 708
AluI AGCT 3 cut(s) 554, 703, 708
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 2 cut(s) 264, 324
Alw44I GTGCAC 1 cut(s) 89
AlwI GGATC 3 cut(s) 44, 57, 200
Ama87I CYCGRG 2 cut(s) 44, 111
Aor13HI TCCGGA 2 cut(s) 52, 208
AoxI GGCC 3 cut(s) 107, 281, 537
ApaLI GTGCAC 1 cut(s) 89
ApeKI GCWGC 1 cut(s) 554
AspS9I GGNCC 4 cut(s) 107, 216, 282, 438
AsuC2I CCSGG 1 cut(s) 391
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 2 cut(s) 44, 111
AvaII GGWCC 2 cut(s) 216, 438
AxyI CCTNAGG 1 cut(s) 278
BaeGI GKGCMC 1 cut(s) 93
BamHI GGATCC 1 cut(s) 49
BanI GGYRCC 1 cut(s) 245
BanII GRGCYC 1 cut(s) 343
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 541
BccI CCATC 4 cut(s) 47, 67, 370, 394
BceAI ACGGC 1 cut(s) 552
BcgI CGANNNNNNTGC 2 cut(s) 294, 328
BcnI CCSGG 1 cut(s) 391
BcoDI GTCTC 2 cut(s) 264, 324
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 1 cut(s) 609
BisI GCNGC 2 cut(s) 460, 555
BlpI GCTNAGC 1 cut(s) 704
BlsI GCNGC 2 cut(s) 461, 556
BmcAI AGTACT 1 cut(s) 239
Bme1390I CCNGG 1 cut(s) 391
Bme18I GGWCC 2 cut(s) 216, 438
BmeT110I CYCGRG 2 cut(s) 44, 111
BmgT120I GGNCC 4 cut(s) 107, 216, 282, 438
BmiI GGNNCC 5 cut(s) 51, 217, 247, 284, 440
BmrFI CCNGG 1 cut(s) 391
BmsI GCATC 3 cut(s) 240, 414, 556
BplI GAGNNNNNCTC 2 cut(s) 461, 493
Bpu1102I GCTNAGC 1 cut(s) 704
BpuEI CTTGAG 1 cut(s) 488
BpuMI CCSGG 1 cut(s) 391
Bsa29I ATCGAT 1 cut(s) 120
BsaAI YACGTR 1 cut(s) 448
BsaBI GATNNNNATC 1 cut(s) 404
BsaI GGTCTC 1 cut(s) 264
BsaWI WCCGGW 3 cut(s) 52, 156, 208
Bsc4I CCNNNNNNNGG 5 cut(s) 208, 255, 415, 507, 675
Bse118I RCCGGY 1 cut(s) 180
Bse21I CCTNAGG 1 cut(s) 278
Bse8I GATNNNNATC 1 cut(s) 404
BseAI TCCGGA 2 cut(s) 52, 208
BseCI ATCGAT 1 cut(s) 120
BseGI GGATG 4 cut(s) 39, 150, 405, 497
BseJI GATNNNNATC 1 cut(s) 404
BseLI CCNNNNNNNGG 5 cut(s) 208, 255, 415, 507, 675
BseSI GKGCMC 1 cut(s) 93
BseXI GCAGC 1 cut(s) 541
Bsh1236I CGCG 2 cut(s) 459, 488
BshFI GGCC 3 cut(s) 109, 283, 539
BshNI GGYRCC 1 cut(s) 245
BshVI ATCGAT 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 93
BsiHKCI CYCGRG 2 cut(s) 44, 111
BsiSI CCGG 6 cut(s) 53, 157, 181, 209, 390, 669
BslFI GGGAC 3 cut(s) 43, 110, 229
BslI CCNNNNNNNGG 5 cut(s) 208, 255, 415, 507, 675
BsmAI GTCTC 2 cut(s) 264, 324
BsmFI GGGAC 3 cut(s) 43, 110, 229
BsmI GAATGC 1 cut(s) 646
BsnI GGCC 3 cut(s) 109, 283, 539
Bso31I GGTCTC 1 cut(s) 264
BsoBI CYCGRG 2 cut(s) 44, 111
Bsp1286I GDGCHC 2 cut(s) 93, 343
Bsp13I TCCGGA 2 cut(s) 52, 208
Bsp143I GATC 3 cut(s) 49, 102, 205
Bsp1720I GCTNAGC 1 cut(s) 704
BspACI CCGC 3 cut(s) 303, 459, 486
BspANI GGCC 3 cut(s) 109, 283, 539
BspDI ATCGAT 1 cut(s) 120
BspEI TCCGGA 2 cut(s) 52, 208
BspFNI CGCG 2 cut(s) 459, 488
BspLI GGNNCC 5 cut(s) 51, 217, 247, 284, 440
BspMAI CTGCAG 1 cut(s) 613
BspPI GGATC 3 cut(s) 44, 57, 200
BspT107I GGYRCC 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 264
BsrFI RCCGGY 1 cut(s) 180
BssAI RCCGGY 1 cut(s) 180
BssMI GATC 3 cut(s) 49, 102, 205
Bst6I CTCTTC 1 cut(s) 438
BstBAI YACGTR 1 cut(s) 448
BstDEI CTNAG 2 cut(s) 278, 704
BstF5I GGATG 4 cut(s) 39, 150, 405, 497
BstFNI CGCG 2 cut(s) 459, 488
BstKTI GATC 3 cut(s) 52, 105, 208
BstMAI GTCTC 2 cut(s) 264, 324
BstMBI GATC 3 cut(s) 49, 102, 205
BstNSI RCATGY 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 389
BstSFI CTRYAG 1 cut(s) 609
BstSLI GKGCMC 1 cut(s) 93
BstUI CGCG 2 cut(s) 459, 488
BstV1I GCAGC 1 cut(s) 541
BstX2I RGATCY 2 cut(s) 49, 205
BstYI RGATCY 2 cut(s) 49, 205
Bsu15I ATCGAT 1 cut(s) 120
Bsu36I CCTNAGG 1 cut(s) 278
BsuRI GGCC 3 cut(s) 109, 283, 539
BsuTUI ATCGAT 1 cut(s) 120
BtsCI GGATG 4 cut(s) 39, 150, 405, 497
Cfr10I RCCGGY 1 cut(s) 180
Cfr13I GGNCC 4 cut(s) 107, 216, 282, 438
ClaI ATCGAT 1 cut(s) 120
CseI GACGC 1 cut(s) 68
Csp6I GTAC 2 cut(s) 173, 238
CviAII CATG 2 cut(s) 167, 360
CviQI GTAC 2 cut(s) 173, 238
DdeI CTNAG 2 cut(s) 278, 704
DpnI GATC 3 cut(s) 51, 104, 207
DpnII GATC 3 cut(s) 49, 102, 205
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 343
Eco31I GGTCTC 1 cut(s) 264
Eco47I GGWCC 2 cut(s) 216, 438
Eco81I CCTNAGG 1 cut(s) 278
Eco88I CYCGRG 2 cut(s) 44, 111
EcoO109I RGGNCCY 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 343
FaeI CATG 2 cut(s) 170, 363
FaiI YATR 9 cut(s) 135, 168, 190, 290, 361, 445, 563, 635, 715
FaqI GGGAC 3 cut(s) 43, 110, 229
FatI CATG 2 cut(s) 166, 359
Fnu4HI GCNGC 2 cut(s) 460, 555
FokI GGATG 4 cut(s) 26, 137, 392, 484
FriOI GRGCYC 1 cut(s) 343
Fsp4HI GCNGC 2 cut(s) 460, 555
FspBI CTAG 1 cut(s) 318
GluI GCNGC 2 cut(s) 460, 555
HaeIII GGCC 3 cut(s) 109, 283, 539
HapII CCGG 6 cut(s) 53, 157, 181, 209, 390, 669
HgaI GACGC 1 cut(s) 68
Hin1II CATG 2 cut(s) 170, 363
HincII GTYRAC 2 cut(s) 529, 596
HindII GTYRAC 2 cut(s) 529, 596
HinfI GANTC 2 cut(s) 163, 332
HpaII CCGG 6 cut(s) 53, 157, 181, 209, 390, 669
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 5 cut(s) 91, 162, 529, 596, 620
Hpy188I TCNGA 2 cut(s) 196, 438
Hpy188III TCNNGA 4 cut(s) 22, 53, 209, 584
Hpy8I GTNNAC 5 cut(s) 91, 162, 529, 596, 620
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 3 cut(s) 150, 206, 464
HpyCH4IV ACGT 1 cut(s) 447
HpyCH4V TGCA 3 cut(s) 85, 91, 611
HpyF3I CTNAG 2 cut(s) 278, 704
HpySE526I ACGT 1 cut(s) 447
Hsp92II CATG 2 cut(s) 170, 363
Kpn2I TCCGGA 2 cut(s) 52, 208
Kzo9I GATC 3 cut(s) 49, 102, 205
LmnI GCTCC 1 cut(s) 551
LpnPI CCDG 6 cut(s) 66, 170, 194, 222, 403, 682
Lsp1109I GCAGC 1 cut(s) 541
LweI GCATC 3 cut(s) 240, 414, 556
MaeI CTAG 1 cut(s) 318
MaeII ACGT 1 cut(s) 447
MalI GATC 3 cut(s) 51, 104, 207
MboI GATC 3 cut(s) 49, 102, 205
MboII GAAGA 2 cut(s) 385, 425
MflI RGATCY 2 cut(s) 49, 205
MhlI GDGCHC 2 cut(s) 93, 343
MluCI AATT 1 cut(s) 624
MlyI GAGTC 2 cut(s) 157, 326
MmeI TCCRAC 1 cut(s) 219
MroI TCCGGA 2 cut(s) 52, 208
MspI CCGG 6 cut(s) 53, 157, 181, 209, 390, 669
MspR9I CCNGG 1 cut(s) 391
Mva1269I GAATGC 1 cut(s) 646
MvnI CGCG 2 cut(s) 459, 488
NciI CCSGG 1 cut(s) 391
NdeII GATC 3 cut(s) 49, 102, 205
NlaIII CATG 2 cut(s) 170, 363
NlaIV GGNNCC 5 cut(s) 51, 217, 247, 284, 440
NspI RCATGY 1 cut(s) 363
PaeR7I CTCGAG 2 cut(s) 44, 111
PciI ACATGT 1 cut(s) 359
PcsI WCGNNNNNNNCGW 1 cut(s) 589
PctI GAATGC 1 cut(s) 646
PkrI GCNGC 2 cut(s) 461, 556
PleI GAGTC 2 cut(s) 157, 326
PpsI GAGTC 2 cut(s) 157, 326
Ppu21I YACGTR 1 cut(s) 448
PscI ACATGT 1 cut(s) 359
PspN4I GGNNCC 5 cut(s) 51, 217, 247, 284, 440
PspPI GGNCC 4 cut(s) 107, 216, 282, 438
PspXI VCTCGAGB 2 cut(s) 44, 111
PstI CTGCAG 1 cut(s) 613
PsuI RGATCY 2 cut(s) 49, 205
RsaI GTAC 2 cut(s) 174, 239
RsaNI GTAC 2 cut(s) 173, 238
SatI GCNGC 2 cut(s) 460, 555
Sau3AI GATC 3 cut(s) 49, 102, 205
Sau96I GGNCC 4 cut(s) 107, 216, 282, 438
ScaI AGTACT 1 cut(s) 239
SchI GAGTC 2 cut(s) 157, 326
ScrFI CCNGG 1 cut(s) 391
SduI GDGCHC 2 cut(s) 93, 343
SetI ASST 7 cut(s) 178, 279, 433, 450, 556, 705, 710
SfaNI GCATC 3 cut(s) 240, 414, 556
SfcI CTRYAG 1 cut(s) 609
Sfr274I CTCGAG 2 cut(s) 44, 111
SgrAI CRCCGGYG 1 cut(s) 180
SinI GGWCC 2 cut(s) 216, 438
SlaI CTCGAG 2 cut(s) 44, 111
SmlI CTYRAG 3 cut(s) 44, 111, 467
SmoI CTYRAG 3 cut(s) 44, 111, 467
Sse9I AATT 1 cut(s) 624
SsiI CCGC 3 cut(s) 303, 459, 486
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 389
TaiI ACGT 1 cut(s) 450
TaqI TCGA 4 cut(s) 45, 112, 120, 234
TaqII GACCGA 1 cut(s) 246
TasI AATT 1 cut(s) 624
TatI WGTACW 1 cut(s) 237
TauI GCSGC 1 cut(s) 462
TseI GCWGC 1 cut(s) 554
TspDTI ATGAA 1 cut(s) 656
VneI GTGCAC 1 cut(s) 89
VpaK11BI GGWCC 2 cut(s) 216, 438
XceI RCATGY 1 cut(s) 363
XhoI CTCGAG 2 cut(s) 44, 111
XspI CTAG 1 cut(s) 318
ZrmI AGTACT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.