Rmu_sc0012849.1_g000002

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012849.1
OG0000179
Physical Location & Seq
Forward (+)
5684 .. 6190
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012849.1_g000002.1.cds

Sequence Viewer

Length: 507 bp
atgataatgaagcactcctcaaagaccattctttccagcaagggggaacttgacaagctaatagcggagcttggcctttatgggattgatccttcatcagtaaggggtaaagttgagggattgttgactagtgctgaccaatacaaattggcacggcttgcttgttcactcaaggctactccaggcacatgtaatcaacgcctcgctgacacagaatcagaaattgcaaaggtcacttcaattcatcaagctaactctgatcatcgccaatttgccctcaagtctttggggaaattaaaggaggaacatcgaaaattagagcaaacagtgacttcagtagacgagagacttctacaacatgagaataagcttgttgacttagaaaaagagaagactcaaatcaaagagacccccgaggtgaccattgcagagcttgagacgacgaaatcattgcgagatatttttgagagccaccataatagcttcaagggtttgacttgggtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

168

Amino Acids

18.84

Weight (kDa)

7.06

Isoelectric Point (pI)

15.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 339
AciI CCGC 1 cut(s) 65
AclWI GGATC 1 cut(s) 83
AcuI CTGAAG 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 42
AflIII ACRYGT 1 cut(s) 188
AgsI TTSAA 2 cut(s) 240, 487
AhlI ACTAGT 1 cut(s) 128
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 6 cut(s) 58, 70, 251, 370, 433, 483
AluI AGCT 6 cut(s) 58, 70, 251, 370, 433, 483
Alw26I GTCTC 3 cut(s) 340, 401, 431
AlwI GGATC 1 cut(s) 83
Ama87I CYCGRG 1 cut(s) 413
AoxI GGCC 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 430
AvaI CYCGRG 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 398
BceAI ACGGC 1 cut(s) 170
BcgI CGANNNNNNTGC 2 cut(s) 433, 467
BciT130I CCWGG 1 cut(s) 183
BclI TGATCA 1 cut(s) 259
BcoDI GTCTC 3 cut(s) 340, 401, 431
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 1 cut(s) 129
Bme1390I CCNGG 1 cut(s) 183
BmeT110I CYCGRG 1 cut(s) 413
BmrFI CCNGG 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 398
BpmI CTGGAG 1 cut(s) 165
BpuEI CTTGAG 3 cut(s) 155, 263, 455
BsaI GGTCTC 1 cut(s) 401
BsaJI CCNNGG 1 cut(s) 414
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse3DI GCAATG 2 cut(s) 423, 449
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 414
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMI GCAATG 2 cut(s) 423, 449
BseRI GAGGAG 1 cut(s) 7
BshFI GGCC 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 413
BslI CCNNNNNNNGG 1 cut(s) 42
BsmAI GTCTC 3 cut(s) 340, 401, 431
BsmBI CGTCTC 1 cut(s) 431
BsnI GGCC 1 cut(s) 75
Bso31I GGTCTC 1 cut(s) 401
BsoBI CYCGRG 1 cut(s) 413
Bsp143I GATC 2 cut(s) 88, 259
BspACI CCGC 1 cut(s) 65
BspANI GGCC 1 cut(s) 75
BspPI GGATC 1 cut(s) 83
BspTNI GGTCTC 1 cut(s) 401
BsrDI GCAATG 2 cut(s) 423, 449
BssECI CCNNGG 1 cut(s) 414
BssMI GATC 2 cut(s) 88, 259
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 328
BstAPI GCANNNNNTGC 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 379
BstEII GGTNACC 1 cut(s) 418
BstKTI GATC 2 cut(s) 91, 262
BstMAI GTCTC 3 cut(s) 340, 401, 431
BstMBI GATC 2 cut(s) 88, 259
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 183
BstNSI RCATGY 1 cut(s) 192
BstPI GGTNACC 1 cut(s) 418
BstSCI CCNGG 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 398
BsuRI GGCC 1 cut(s) 75
BtgZI GCGATG 1 cut(s) 248
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 1 cut(s) 159
CviAII CATG 2 cut(s) 189, 359
DdeI CTNAG 1 cut(s) 379
DpnI GATC 2 cut(s) 90, 261
DpnII GATC 2 cut(s) 88, 259
Eco31I GGTCTC 1 cut(s) 401
Eco57I CTGAAG 1 cut(s) 318
Eco88I CYCGRG 1 cut(s) 413
Eco91I GGTNACC 1 cut(s) 418
EcoO65I GGTNACC 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 181
Esp3I CGTCTC 1 cut(s) 431
FaeI CATG 2 cut(s) 192, 362
FaiI YATR 4 cut(s) 81, 190, 360, 477
FatI CATG 2 cut(s) 188, 358
FbaI TGATCA 1 cut(s) 259
FblI GTMKAC 1 cut(s) 339
FspBI CTAG 1 cut(s) 129
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 1 cut(s) 75
Hin1II CATG 2 cut(s) 192, 362
HincII GTYRAC 2 cut(s) 126, 376
HindII GTYRAC 2 cut(s) 126, 376
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 2 cut(s) 215, 394
HphI GGTGA 1 cut(s) 430
Hpy166II GTNNAC 4 cut(s) 126, 167, 340, 376
Hpy188I TCNGA 2 cut(s) 220, 259
Hpy8I GTNNAC 4 cut(s) 126, 167, 340, 376
Hpy99I CGWCG 1 cut(s) 445
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4V TGCA 2 cut(s) 227, 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 1 cut(s) 379
Hsp92II CATG 2 cut(s) 192, 362
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 2 cut(s) 88, 259
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 3 cut(s) 49, 168, 195
MaeI CTAG 1 cut(s) 129
MaeIII GTNAC 3 cut(s) 232, 328, 418
MalI GATC 2 cut(s) 90, 261
MboI GATC 2 cut(s) 88, 259
MboII GAAGA 1 cut(s) 403
MluCI AATT 6 cut(s) 146, 222, 240, 269, 293, 314
MlyI GAGTC 1 cut(s) 388
MnlI CCTC 6 cut(s) 28, 109, 212, 287, 295, 409
MseI TTAA 1 cut(s) 296
MspR9I CCNGG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 2 cut(s) 88, 259
NlaIII CATG 2 cut(s) 192, 362
NmuCI GTSAC 3 cut(s) 232, 328, 418
NspI RCATGY 1 cut(s) 192
PciI ACATGT 1 cut(s) 188
PfeI GAWTC 1 cut(s) 215
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
PscI ACATGT 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 181
PspEI GGTNACC 1 cut(s) 418
PspGI CCWGG 1 cut(s) 181
SaqAI TTAA 1 cut(s) 296
Sau3AI GATC 2 cut(s) 88, 259
SchI GAGTC 1 cut(s) 388
ScrFI CCNGG 1 cut(s) 183
SetI ASST 8 cut(s) 60, 72, 234, 253, 372, 420, 435, 485
SmlI CTYRAG 3 cut(s) 170, 278, 434
SmoI CTYRAG 3 cut(s) 170, 278, 434
SpeI ACTAGT 1 cut(s) 128
Sse9I AATT 6 cut(s) 146, 222, 240, 269, 293, 314
SsiI CCGC 1 cut(s) 65
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 328
TaqI TCGA 1 cut(s) 310
TasI AATT 6 cut(s) 146, 222, 240, 269, 293, 314
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TscAI CASTG 1 cut(s) 333
TseFI GTSAC 3 cut(s) 232, 328, 418
Tsp45I GTSAC 3 cut(s) 232, 328, 418
TspDTI ATGAA 3 cut(s) 23, 84, 233
TspRI CASTG 1 cut(s) 333
XceI RCATGY 1 cut(s) 192
XmiI GTMKAC 1 cut(s) 339
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.