Rmu_sc0010243.1_g000001

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010243.1
OG0000179
Physical Location & Seq
Forward (+)
1 .. 725
725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010243.1_g000001.1.cds

Sequence Viewer

Length: 643 bp
tcgcgcaaatggaagcttctcttacacagagttctactgggaatgggtagaagatatcttaagcaggaatggcaagcttactcgggagactggcctctatcgagctatattcgcctcactgttcagctatgaccgtgttgcagctgtcatacgagccttctgcgagtactggtgtcccgtgacgaataccctccacacttctagcggggaaatgtttatctccctctgggatttggaccaacttggaggtttacccattgcaggacgattctatgatgaggttgtcccagctgctgaagagctttctgcaacgagcaaagggagtcaacagagctgccgttatttgtttctcgcctaccataagctctgcaaagaaagccaagggcagaaggtgaaaataacttcctggatacgatattggtatagaggagctttgcgctataagaggcctccaaacaaaagcaccaggaacaaaagagatccgcccccgaatgtgtttaatccatctggcaggatccatgagattcgacaacgcacttctacagacctcgcagtctttgaggacttaggcgtagaaggtgaagatatagagtccacctacttggccgcttttcttgcttgttgggtgtacagttttgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

213

Amino Acids

24.57

Weight (kDa)

8.26

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 552
AccII CGCG 1 cut(s) 4
AciI CCGC 3 cut(s) 205, 483, 607
AclWI GGATC 3 cut(s) 474, 509, 522
AcoI YGGCCR 1 cut(s) 604
AcuI CTGAAG 1 cut(s) 316
AfaI GTAC 2 cut(s) 168, 630
AfiI CCNNNNNNNGG 1 cut(s) 261
AflII CTTAAG 1 cut(s) 59
AjnI CCWGG 2 cut(s) 405, 465
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 3 cut(s) 474, 509, 522
AlwNI CAGNNNCTG 1 cut(s) 294
Ama87I CYCGRG 1 cut(s) 82
AoxI GGCC 3 cut(s) 92, 447, 604
ApeKI GCWGC 3 cut(s) 141, 291, 334
AspLEI GCGC 2 cut(s) 6, 439
AspS9I GGNCC 1 cut(s) 236
AsuHPI GGTGA 2 cut(s) 404, 591
AvaI CYCGRG 1 cut(s) 82
AvaII GGWCC 1 cut(s) 236
BamHI GGATCC 1 cut(s) 514
BbvI GCAGC 3 cut(s) 153, 278, 321
BccI CCATC 1 cut(s) 512
BceAI ACGGC 1 cut(s) 322
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BciT130I CCWGG 2 cut(s) 407, 467
BciVI GTATCC 1 cut(s) 403
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 2 cut(s) 202, 641
BfmI CTRYAG 1 cut(s) 541
BfrI CTTAAG 1 cut(s) 59
BfuI GTATCC 1 cut(s) 403
BisI GCNGC 4 cut(s) 142, 292, 335, 607
BlsI GCNGC 4 cut(s) 143, 293, 336, 608
BmcAI AGTACT 1 cut(s) 168
Bme1390I CCNGG 2 cut(s) 407, 467
Bme18I GGWCC 1 cut(s) 236
BmeT110I CYCGRG 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 516
BmrFI CCNGG 2 cut(s) 407, 467
BmrI ACTGGG 1 cut(s) 47
BmuI ACTGGG 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 380
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse1I ACTGG 3 cut(s) 42, 95, 174
Bse3DI GCAATG 1 cut(s) 256
BseBI CCWGG 2 cut(s) 407, 467
BseDI CCNNGG 1 cut(s) 380
BseLI CCNNNNNNNGG 1 cut(s) 261
BseMI GCAATG 1 cut(s) 256
BseNI ACTGG 3 cut(s) 42, 95, 174
BseRI GAGGAG 1 cut(s) 442
BseXI GCAGC 3 cut(s) 153, 278, 321
BseYI CCCAGC 1 cut(s) 287
Bsh1236I CGCG 1 cut(s) 4
BshFI GGCC 3 cut(s) 94, 449, 606
BsiHKCI CYCGRG 1 cut(s) 82
BslFI GGGAC 2 cut(s) 160, 270
BslI CCNNNNNNNGG 1 cut(s) 261
BsmAI GTCTC 1 cut(s) 81
BsmFI GGGAC 2 cut(s) 160, 270
BsnI GGCC 3 cut(s) 94, 449, 606
BsoBI CYCGRG 1 cut(s) 82
Bsp1407I TGTACA 1 cut(s) 628
Bsp143I GATC 2 cut(s) 479, 514
BspACI CCGC 3 cut(s) 205, 483, 607
BspANI GGCC 3 cut(s) 94, 449, 606
BspFNI CGCG 1 cut(s) 4
BspLI GGNNCC 1 cut(s) 516
BspPI GGATC 3 cut(s) 474, 509, 522
BspQI GCTCTTC 1 cut(s) 292
BspTI CTTAAG 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 256
BsrGI TGTACA 1 cut(s) 628
BsrI ACTGG 3 cut(s) 42, 95, 174
BssECI CCNNGG 1 cut(s) 380
BssMI GATC 2 cut(s) 479, 514
BssT1I CCWWGG 1 cut(s) 380
Bst2UI CCWGG 2 cut(s) 407, 467
Bst4CI ACNGT 3 cut(s) 121, 135, 633
Bst6I CTCTTC 1 cut(s) 292
BstAFI CTTAAG 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 628
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 566
BstFNI CGCG 1 cut(s) 4
BstHHI GCGC 2 cut(s) 6, 439
BstKTI GATC 2 cut(s) 482, 517
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 2 cut(s) 479, 514
BstMWI GCNNNNNNNGC 4 cut(s) 70, 111, 376, 615
BstNI CCWGG 2 cut(s) 407, 467
BstSCI CCNGG 2 cut(s) 405, 465
BstSFI CTRYAG 1 cut(s) 541
BstUI CGCG 1 cut(s) 4
BstV1I GCAGC 3 cut(s) 153, 278, 321
BstX2I RGATCY 2 cut(s) 479, 514
BstXI CCANNNNNNTGG 1 cut(s) 602
BstYI RGATCY 2 cut(s) 479, 514
BsuI GTATCC 1 cut(s) 403
BsuRI GGCC 3 cut(s) 94, 449, 606
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 75
CaiI CAGNNNCTG 1 cut(s) 294
CfoI GCGC 2 cut(s) 6, 439
Cfr13I GGNCC 1 cut(s) 236
Csp6I GTAC 2 cut(s) 167, 629
CviAII CATG 1 cut(s) 519
CviQI GTAC 2 cut(s) 167, 629
DdeI CTNAG 1 cut(s) 566
DpnI GATC 2 cut(s) 481, 516
DpnII GATC 2 cut(s) 479, 514
DrdI GACNNNNNNGTC 1 cut(s) 552
DseDI GACNNNNNNGTC 1 cut(s) 552
EaeI YGGCCR 1 cut(s) 604
Eam1104I CTCTTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 292
EciI GGCGGA 1 cut(s) 472
Eco130I CCWWGG 1 cut(s) 380
Eco147I AGGCCT 1 cut(s) 449
Eco32I GATATC 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 316
Eco88I CYCGRG 1 cut(s) 82
EcoRII CCWGG 2 cut(s) 405, 465
EcoRV GATATC 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 380
ErhI CCWWGG 1 cut(s) 380
FaeI CATG 1 cut(s) 522
FaiI YATR 9 cut(s) 108, 130, 150, 274, 361, 424, 442, 520, 588
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 2 cut(s) 160, 270
FatI CATG 1 cut(s) 518
FauI CCCGC 1 cut(s) 198
Fnu4HI GCNGC 4 cut(s) 142, 292, 335, 607
Fsp4HI GCNGC 4 cut(s) 142, 292, 335, 607
FspBI CTAG 2 cut(s) 202, 641
GlaI GCGC 2 cut(s) 5, 438
GluI GCNGC 4 cut(s) 142, 292, 335, 607
GsaI CCCAGC 1 cut(s) 291
HaeIII GGCC 3 cut(s) 94, 449, 606
HhaI GCGC 2 cut(s) 6, 439
Hin1II CATG 1 cut(s) 522
Hin6I GCGC 2 cut(s) 4, 437
HinP1I GCGC 2 cut(s) 4, 437
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HindIII AAGCTT 2 cut(s) 14, 75
HinfI GANTC 4 cut(s) 268, 323, 524, 591
HphI GGTGA 2 cut(s) 404, 591
Hpy166II GTNNAC 4 cut(s) 252, 327, 595, 629
Hpy188III TCNNGA 1 cut(s) 84
Hpy8I GTNNAC 4 cut(s) 252, 327, 595, 629
HpyAV CCTTC 3 cut(s) 167, 383, 570
HpyCH4III ACNGT 3 cut(s) 121, 135, 633
HpyCH4V TGCA 4 cut(s) 141, 261, 309, 370
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 111, 376, 615
HpyF3I CTNAG 1 cut(s) 566
Hsp92II CATG 1 cut(s) 522
HspAI GCGC 2 cut(s) 4, 437
Kzo9I GATC 2 cut(s) 479, 514
LguI GCTCTTC 1 cut(s) 292
LmnI GCTCC 1 cut(s) 429
Lsp1109I GCAGC 3 cut(s) 153, 278, 321
MaeI CTAG 2 cut(s) 202, 641
MaeIII GTNAC 1 cut(s) 179
MalI GATC 2 cut(s) 481, 516
MboI GATC 2 cut(s) 479, 514
MboII GAAGA 3 cut(s) 63, 309, 594
MflI RGATCY 2 cut(s) 479, 514
MlyI GAGTC 2 cut(s) 332, 600
MseI TTAA 2 cut(s) 60, 499
MspA1I CMGCKG 2 cut(s) 144, 291
MspCI CTTAAG 1 cut(s) 59
MspR9I CCNGG 2 cut(s) 407, 467
MvaI CCWGG 2 cut(s) 407, 467
MvnI CGCG 1 cut(s) 4
MwoI GCNNNNNNNGC 4 cut(s) 70, 111, 376, 615
NdeII GATC 2 cut(s) 479, 514
NlaIII CATG 1 cut(s) 522
NlaIV GGNNCC 1 cut(s) 516
NmuCI GTSAC 1 cut(s) 179
PceI AGGCCT 1 cut(s) 449
PciSI GCTCTTC 1 cut(s) 292
PfeI GAWTC 2 cut(s) 268, 524
PfoI TCCNGGA 1 cut(s) 405
PkrI GCNGC 4 cut(s) 143, 293, 336, 608
PleI GAGTC 2 cut(s) 331, 599
PpsI GAGTC 2 cut(s) 331, 599
Psp6I CCWGG 2 cut(s) 405, 465
PspFI CCCAGC 1 cut(s) 287
PspGI CCWGG 2 cut(s) 405, 465
PspN4I GGNNCC 1 cut(s) 516
PspPI GGNCC 1 cut(s) 236
PstNI CAGNNNCTG 1 cut(s) 294
PsuI RGATCY 2 cut(s) 479, 514
PvuII CAGCTG 2 cut(s) 144, 291
RsaI GTAC 2 cut(s) 168, 630
RsaNI GTAC 2 cut(s) 167, 629
SapI GCTCTTC 1 cut(s) 292
SaqAI TTAA 2 cut(s) 60, 499
SatI GCNGC 4 cut(s) 142, 292, 335, 607
Sau3AI GATC 2 cut(s) 479, 514
Sau96I GGNCC 1 cut(s) 236
ScaI AGTACT 1 cut(s) 168
SchI GAGTC 2 cut(s) 332, 600
ScrFI CCNGG 2 cut(s) 407, 467
SfcI CTRYAG 1 cut(s) 541
SinI GGWCC 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
SseBI AGGCCT 1 cut(s) 449
SsiI CCGC 3 cut(s) 205, 483, 607
SspMI CTAG 2 cut(s) 202, 641
StuI AGGCCT 1 cut(s) 449
StyD4I CCNGG 2 cut(s) 405, 465
StyI CCWWGG 1 cut(s) 380
TaaI ACNGT 3 cut(s) 121, 135, 633
TaqI TCGA 2 cut(s) 101, 527
TatI WGTACW 2 cut(s) 166, 628
TauI GCSGC 1 cut(s) 609
TfiI GAWTC 2 cut(s) 268, 524
Tru1I TTAA 2 cut(s) 60, 499
Tru9I TTAA 2 cut(s) 60, 499
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 3 cut(s) 141, 291, 334
Tsp45I GTSAC 1 cut(s) 179
TspRI CASTG 1 cut(s) 124
Vha464I CTTAAG 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 236
XspI CTAG 2 cut(s) 202, 641
ZrmI AGTACT 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.