Rroxscaffold_2G00113080

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000179
Physical Location & Seq
Reverse (-)
38580595 .. 38591371
10777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00113080.1

Sequence Viewer

Length: 342 bp
ATGTCCATCTCCCTTTGGGATACGGACCAACTCGGAGGTTTGCCCATTACGGGACGGTTTTATGATGAGGTGGTTCCGCCGCCGAAGAGCTTTCGCAACAAGCAAAGGGAGTCGGCGAGCCGTCGCTATTTGTTTCTCGCCTACCATAAGCTTTGCAAGGAAGGTCGAGGGCAGAAAGAAGAGACGGTCGCTGCAGCAGTAGACAACTCTTGCAGCAGAGCATCTGCGGTGACGCAAATCCTGGAACGAGGTGGAGGAGGAACCTTGGGAACTGTGGTCTCATTGTTTAAGGAAGAAGAGGATATCCCTCTACTGGTCGAAAGCTTCTTCCTCACCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

113

Amino Acids

12.53

Weight (kDa)

5.83

Isoelectric Point (pI)

55.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 201
AciI CCGC 3 cut(s) 77, 80, 227
AfiI CCNNNNNNNGG 2 cut(s) 50, 313
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 3 cut(s) 90, 151, 324
AluI AGCT 3 cut(s) 90, 151, 324
Alw26I GTCTC 2 cut(s) 176, 283
ApeKI GCWGC 3 cut(s) 191, 194, 213
AspS9I GGNCC 1 cut(s) 25
AsuHPI GGTGA 2 cut(s) 241, 325
AvaII GGWCC 1 cut(s) 25
BbvI GCAGC 3 cut(s) 178, 206, 225
BccI CCATC 1 cut(s) 14
BceAI ACGGC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 242
BciVI GTATCC 1 cut(s) 13
BcoDI GTCTC 2 cut(s) 176, 283
BfmI CTRYAG 1 cut(s) 192
BfuI GTATCC 1 cut(s) 13
BisI GCNGC 4 cut(s) 80, 192, 195, 214
BlsI GCNGC 4 cut(s) 81, 193, 196, 215
Bme1390I CCNGG 1 cut(s) 242
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 2 cut(s) 75, 262
BmrFI CCNGG 1 cut(s) 242
BmsI GCATC 1 cut(s) 230
BsaI GGTCTC 1 cut(s) 283
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 313
Bse1I ACTGG 1 cut(s) 318
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 264
BseLI CCNNNNNNNGG 2 cut(s) 50, 313
BseNI ACTGG 1 cut(s) 318
BseRI GAGGAG 1 cut(s) 270
BseXI GCAGC 3 cut(s) 178, 206, 225
Bsh1285I CGRYCG 1 cut(s) 189
BsiEI CGRYCG 1 cut(s) 189
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 2 cut(s) 50, 313
BsmAI GTCTC 2 cut(s) 176, 283
BsmBI CGTCTC 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 66
Bso31I GGTCTC 1 cut(s) 283
BspACI CCGC 3 cut(s) 77, 80, 227
BspLI GGNNCC 2 cut(s) 75, 262
BspMAI CTGCAG 1 cut(s) 196
BspQI GCTCTTC 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 283
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 3 cut(s) 57, 187, 274
Bst6I CTCTTC 3 cut(s) 80, 174, 291
BstC8I GCNNGC 1 cut(s) 118
BstMAI GTCTC 2 cut(s) 176, 283
BstMCI CGRYCG 1 cut(s) 189
BstNI CCWGG 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 240
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 3 cut(s) 178, 206, 225
BsuI GTATCC 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 25
CseI GACGC 1 cut(s) 241
CviJI RGCY 4 cut(s) 90, 120, 151, 324
CviKI_1 RGCY 4 cut(s) 90, 120, 151, 324
Eam1104I CTCTTC 3 cut(s) 80, 174, 291
EarI CTCTTC 3 cut(s) 80, 174, 291
EciI GGCGGA 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 264
Eco31I GGTCTC 1 cut(s) 283
Eco32I GATATC 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 240
EcoRV GATATC 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
Esp3I CGTCTC 1 cut(s) 176
FaiI YATR 2 cut(s) 63, 147
FaqI GGGAC 1 cut(s) 66
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 4 cut(s) 80, 192, 195, 214
Fsp4HI GCNGC 4 cut(s) 80, 192, 195, 214
GluI GCNGC 4 cut(s) 80, 192, 195, 214
HgaI GACGC 1 cut(s) 241
HindIII AAGCTT 2 cut(s) 149, 322
HinfI GANTC 1 cut(s) 110
HphI GGTGA 2 cut(s) 241, 325
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 35
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 3 cut(s) 57, 187, 274
HpyCH4V TGCA 3 cut(s) 156, 194, 213
LguI GCTCTTC 1 cut(s) 80
LpnPI CCDG 3 cut(s) 227, 254, 299
Lsp1109I GCAGC 3 cut(s) 178, 206, 225
LweI GCATC 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 229
MboII GAAGA 5 cut(s) 97, 191, 305, 308, 319
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 9 cut(s) 29, 61, 161, 242, 248, 251, 292, 318, 341
MseI TTAA 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 242
MvaI CCWGG 1 cut(s) 242
NlaIV GGNNCC 2 cut(s) 75, 262
NmuCI GTSAC 1 cut(s) 229
PciSI GCTCTTC 1 cut(s) 80
PfoI TCCNGGA 1 cut(s) 240
PkrI GCNGC 4 cut(s) 81, 193, 196, 215
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 75, 262
PspPI GGNCC 1 cut(s) 25
PstI CTGCAG 1 cut(s) 196
SapI GCTCTTC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 4 cut(s) 80, 192, 195, 214
Sau96I GGNCC 1 cut(s) 25
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 242
SetI ASST 8 cut(s) 40, 72, 92, 153, 166, 253, 266, 326
SfaNI GCATC 1 cut(s) 230
SfcI CTRYAG 1 cut(s) 192
SinI GGWCC 1 cut(s) 25
SsiI CCGC 3 cut(s) 77, 80, 227
StyD4I CCNGG 1 cut(s) 240
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 3 cut(s) 57, 187, 274
TaqI TCGA 2 cut(s) 166, 318
TauI GCSGC 1 cut(s) 82
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 3 cut(s) 191, 194, 213
Tsp45I GTSAC 1 cut(s) 229
TspGWI ACGGA 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.