Rmu_sc0025334.1_g000002

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025334.1
OG0000179
Physical Location & Seq
Forward (+)
2384 .. 3026
643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025334.1_g000002.1.cds

Sequence Viewer

Length: 543 bp
atggagggtgaagatatagagcccacttatttggctgtctttgttgattgttggttgtgcctgtttgttttacccagagacaacaccgttttgattcgtcagggagtattcaaagtcgccagcaaaatgtcacagggtctaaaattttgcctagcagtatggatgctggctagcatttatcagggtttgaacgagatctctgtttccagtgatccaagtaattgttcagctgctcttccttttcattttacatacgtatggctagcagagtacttcgacacccactttcaatctccatttcccaacgacctaaggccccgtatggttcgcttctccggagaattttcagctaagtattttgaggactcacaggctctttctttgttcaatgcatgtgacaatgtgaggatggatgcatttgccagggataaacgacgattatttagccataaagtccacatcagtttagtcgacagtttggttatgtccaagacattcccggcagccttaagaatgacatttgcaccggcgtattggctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

180

Amino Acids

20.67

Weight (kDa)

6.41

Isoelectric Point (pI)

60.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 471
AccIII TCCGGA 1 cut(s) 335
AclWI GGATC 1 cut(s) 206
AcsI RAATTY 2 cut(s) 143, 341
AfaI GTAC 1 cut(s) 272
AflII CTTAAG 1 cut(s) 508
AgsI TTSAA 4 cut(s) 112, 190, 290, 388
AjnI CCWGG 1 cut(s) 422
AjuI GAANNNNNNNTTGG 2 cut(s) 208, 240
AluBI AGCT 2 cut(s) 230, 350
AluI AGCT 2 cut(s) 230, 350
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 1 cut(s) 206
Aor13HI TCCGGA 1 cut(s) 335
AoxI GGCC 1 cut(s) 314
ApeKI GCWGC 2 cut(s) 230, 503
ApoI RAATTY 2 cut(s) 143, 341
AspS9I GGNCC 1 cut(s) 315
AsuC2I CCSGG 1 cut(s) 500
AsuHPI GGTGA 1 cut(s) 20
AsuNHI GCTAGC 2 cut(s) 170, 262
AxyI CCTNAGG 1 cut(s) 311
BanII GRGCYC 1 cut(s) 24
BbvI GCAGC 2 cut(s) 217, 515
BccI CCATC 1 cut(s) 403
BciT130I CCWGG 1 cut(s) 424
BcnI CCSGG 1 cut(s) 500
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 3 cut(s) 152, 171, 263
BfrI CTTAAG 1 cut(s) 508
BglII AGATCT 1 cut(s) 195
BisI GCNGC 2 cut(s) 231, 504
BlsI GCNGC 2 cut(s) 232, 505
BmcAI AGTACT 1 cut(s) 272
Bme1390I CCNGG 2 cut(s) 424, 500
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 1 cut(s) 317
BmrFI CCNGG 2 cut(s) 424, 500
BmsI GCATC 2 cut(s) 153, 403
BmtI GCTAGC 2 cut(s) 174, 266
BpuMI CCSGG 1 cut(s) 500
BsaAI YACGTR 1 cut(s) 256
BsaJI CCNNGG 1 cut(s) 423
BsaWI WCCGGW 1 cut(s) 335
Bse118I RCCGGY 1 cut(s) 526
Bse1I ACTGG 1 cut(s) 207
Bse21I CCTNAGG 1 cut(s) 311
BseAI TCCGGA 1 cut(s) 335
BseBI CCWGG 1 cut(s) 424
BseDI CCNNGG 1 cut(s) 423
BseGI GGATG 3 cut(s) 168, 414, 418
BseNI ACTGG 1 cut(s) 207
BseXI GCAGC 2 cut(s) 217, 515
BshFI GGCC 1 cut(s) 316
BsiSI CCGG 3 cut(s) 336, 500, 527
BsmAI GTCTC 1 cut(s) 72
BsnI GGCC 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 24
Bsp13I TCCGGA 1 cut(s) 335
Bsp143I GATC 2 cut(s) 195, 211
BspANI GGCC 1 cut(s) 316
BspEI TCCGGA 1 cut(s) 335
BspLI GGNNCC 1 cut(s) 317
BspOI GCTAGC 2 cut(s) 174, 266
BspPI GGATC 1 cut(s) 206
BspQI GCTCTTC 1 cut(s) 240
BspTI CTTAAG 1 cut(s) 508
BsrFI RCCGGY 1 cut(s) 526
BsrI ACTGG 1 cut(s) 207
BssAI RCCGGY 1 cut(s) 526
BssECI CCNNGG 1 cut(s) 423
BssMI GATC 2 cut(s) 195, 211
Bst2UI CCWGG 1 cut(s) 424
Bst4CI ACNGT 2 cut(s) 88, 476
Bst6I CTCTTC 1 cut(s) 240
BstAFI CTTAAG 1 cut(s) 508
BstBAI YACGTR 1 cut(s) 256
BstC8I GCNNGC 4 cut(s) 121, 168, 172, 264
BstDEI CTNAG 2 cut(s) 311, 351
BstF5I GGATG 3 cut(s) 168, 414, 418
BstKTI GATC 2 cut(s) 198, 214
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 2 cut(s) 195, 211
BstNI CCWGG 1 cut(s) 424
BstNSI RCATGY 1 cut(s) 396
BstSCI CCNGG 2 cut(s) 422, 498
BstSNI TACGTA 1 cut(s) 256
BstV1I GCAGC 2 cut(s) 217, 515
BstX2I RGATCY 1 cut(s) 195
BstXI CCANNNNNNTGG 1 cut(s) 31
BstYI RGATCY 1 cut(s) 195
Bsu36I CCTNAGG 1 cut(s) 311
BsuRI GGCC 1 cut(s) 316
BtsCI GGATG 3 cut(s) 168, 414, 418
BtsIMutI CAGTG 1 cut(s) 214
Cac8I GCNNGC 4 cut(s) 121, 168, 172, 264
Cfr10I RCCGGY 1 cut(s) 526
Cfr13I GGNCC 1 cut(s) 315
Csp6I GTAC 1 cut(s) 271
CviAII CATG 1 cut(s) 393
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 2 cut(s) 311, 351
DpnI GATC 2 cut(s) 197, 213
DpnII GATC 2 cut(s) 195, 211
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco105I TACGTA 1 cut(s) 256
Eco24I GRGCYC 1 cut(s) 24
Eco81I CCTNAGG 1 cut(s) 311
EcoO109I RGGNCCY 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 422
EcoT22I ATGCAT 2 cut(s) 394, 418
EcoT38I GRGCYC 1 cut(s) 24
FaeI CATG 1 cut(s) 396
FaiI YATR 8 cut(s) 17, 160, 253, 259, 323, 394, 450, 485
FatI CATG 1 cut(s) 392
FblI GTMKAC 1 cut(s) 471
Fnu4HI GCNGC 2 cut(s) 231, 504
FokI GGATG 3 cut(s) 175, 421, 425
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 2 cut(s) 231, 504
FspBI CTAG 3 cut(s) 152, 171, 263
GluI GCNGC 2 cut(s) 231, 504
HaeIII GGCC 1 cut(s) 316
HapII CCGG 3 cut(s) 336, 500, 527
Hin1II CATG 1 cut(s) 396
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HinfI GANTC 2 cut(s) 94, 365
HpaII CCGG 3 cut(s) 336, 500, 527
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 2 cut(s) 457, 472
Hpy188I TCNGA 1 cut(s) 542
Hpy188III TCNNGA 1 cut(s) 336
Hpy8I GTNNAC 2 cut(s) 457, 472
Hpy99I CGWCG 1 cut(s) 438
HpyCH4III ACNGT 2 cut(s) 88, 476
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 3 cut(s) 392, 416, 524
HpyF3I CTNAG 2 cut(s) 311, 351
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 1 cut(s) 396
Kpn2I TCCGGA 1 cut(s) 335
Kzo9I GATC 2 cut(s) 195, 211
LguI GCTCTTC 1 cut(s) 240
Lsp1109I GCAGC 2 cut(s) 217, 515
LweI GCATC 2 cut(s) 153, 403
MaeI CTAG 3 cut(s) 152, 171, 263
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 129, 395
MalI GATC 2 cut(s) 197, 213
MboI GATC 2 cut(s) 195, 211
MboII GAAGA 2 cut(s) 23, 227
MflI RGATCY 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 3 cut(s) 143, 220, 341
MlyI GAGTC 1 cut(s) 359
MnlI CCTC 2 cut(s) 355, 399
Mph1103I ATGCAT 2 cut(s) 394, 418
MroI TCCGGA 1 cut(s) 335
MseI TTAA 1 cut(s) 509
MslI CAYNNNNRTG 1 cut(s) 256
MspA1I CMGCKG 1 cut(s) 230
MspCI CTTAAG 1 cut(s) 508
MspI CCGG 3 cut(s) 336, 500, 527
MspR9I CCNGG 2 cut(s) 424, 500
MvaI CCWGG 1 cut(s) 424
NciI CCSGG 1 cut(s) 500
NdeII GATC 2 cut(s) 195, 211
NheI GCTAGC 2 cut(s) 170, 262
NlaIII CATG 1 cut(s) 396
NlaIV GGNNCC 1 cut(s) 317
NmuCI GTSAC 2 cut(s) 129, 395
NsiI ATGCAT 2 cut(s) 394, 418
NspI RCATGY 1 cut(s) 396
PciSI GCTCTTC 1 cut(s) 240
PfeI GAWTC 1 cut(s) 94
PkrI GCNGC 2 cut(s) 232, 505
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
Ppu21I YACGTR 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 422
PspGI CCWGG 1 cut(s) 422
PspN4I GGNNCC 1 cut(s) 317
PspPI GGNCC 1 cut(s) 315
PsuI RGATCY 1 cut(s) 195
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
RseI CAYNNNNRTG 1 cut(s) 256
SalI GTCGAC 1 cut(s) 470
SapI GCTCTTC 1 cut(s) 240
SaqAI TTAA 1 cut(s) 509
SatI GCNGC 2 cut(s) 231, 504
Sau3AI GATC 2 cut(s) 195, 211
Sau96I GGNCC 1 cut(s) 315
ScaI AGTACT 1 cut(s) 272
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 2 cut(s) 424, 500
SduI GDGCHC 1 cut(s) 24
SetI ASST 4 cut(s) 232, 258, 312, 352
SfaNI GCATC 2 cut(s) 153, 403
SgrAI CRCCGGYG 1 cut(s) 526
SmiMI CAYNNNNRTG 1 cut(s) 256
SmlI CTYRAG 1 cut(s) 508
SmoI CTYRAG 1 cut(s) 508
SnaBI TACGTA 1 cut(s) 256
Sse9I AATT 3 cut(s) 143, 220, 341
SspMI CTAG 3 cut(s) 152, 171, 263
StyD4I CCNGG 2 cut(s) 422, 498
TaaI ACNGT 2 cut(s) 88, 476
TaiI ACGT 1 cut(s) 258
TaqI TCGA 2 cut(s) 276, 471
TasI AATT 3 cut(s) 143, 220, 341
TatI WGTACW 1 cut(s) 270
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 509
Tru9I TTAA 1 cut(s) 509
TscAI CASTG 1 cut(s) 214
TseFI GTSAC 2 cut(s) 129, 395
TseI GCWGC 2 cut(s) 230, 503
Tsp45I GTSAC 2 cut(s) 129, 395
TspDTI ATGAA 1 cut(s) 233
TspRI CASTG 1 cut(s) 214
Vha464I CTTAAG 1 cut(s) 508
XapI RAATTY 2 cut(s) 143, 341
XceI RCATGY 1 cut(s) 396
XmiI GTMKAC 1 cut(s) 471
XspI CTAG 3 cut(s) 152, 171, 263
ZrmI AGTACT 1 cut(s) 272
Zsp2I ATGCAT 2 cut(s) 394, 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.