Rmu_sc0000173.1_g000036

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000173.1
OG0000179
Physical Location & Seq
Forward (+)
158824 .. 159378
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000173.1_g000036.1.cds

Sequence Viewer

Length: 555 bp
atgaacaaaagagatccgcccccgaatgtgtttaatccatctggcaggatccatgagatccgacaacgtacttctgcagacctcgcagactttgaggacttaggcgtagaaggtgaagatatagagcccacctacttggccgcttttctcgcttgttggttgtgcctgtttgttttacctggagacaacaccggcttgattcgtccaggagtattcaaagtcgccagcaaaatgtcacagggcgtacagttttgcctagcggtaccagtgctggacagcatctatcagggtttgaacgagatttctgtttccagctatccaggtaattgctcggctgctcttccttttcattatatttatgcatggctagcagagtacttcggcacccactttcagtctccacttcccaacgacctaaggccccgtatggttcgcttctccggagaacttttagctaggcattttggagactcacaggctctttctttgttcgacacatgtgattccccctccctctctccccctccctcaacttgttcaggcaccgcagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

184

Amino Acids

20.13

Weight (kDa)

4.93

Isoelectric Point (pI)

64.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 262
AccB1I GGYRCC 3 cut(s) 262, 383, 542
AccIII TCCGGA 1 cut(s) 440
AciI CCGC 4 cut(s) 17, 141, 260, 546
AclWI GGATC 4 cut(s) 8, 43, 52, 56
AcoI YGGCCR 1 cut(s) 138
AfaI GTAC 4 cut(s) 70, 246, 264, 377
AflIII ACRYGT 1 cut(s) 497
AgsI TTSAA 2 cut(s) 217, 295
AjnI CCWGG 3 cut(s) 178, 205, 319
AluBI AGCT 3 cut(s) 315, 455, 551
AluI AGCT 3 cut(s) 315, 455, 551
Alw26I GTCTC 3 cut(s) 177, 402, 462
AlwI GGATC 4 cut(s) 8, 43, 52, 56
Aor13HI TCCGGA 1 cut(s) 440
AoxI GGCC 2 cut(s) 138, 419
ApeKI GCWGC 2 cut(s) 335, 548
Asp718I GGTACC 1 cut(s) 262
AspS9I GGNCC 1 cut(s) 420
AsuHPI GGTGA 1 cut(s) 125
AsuNHI GCTAGC 1 cut(s) 367
AxyI CCTNAGG 1 cut(s) 416
BamHI GGATCC 1 cut(s) 48
BanI GGYRCC 3 cut(s) 262, 383, 542
BanII GRGCYC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 322
BccI CCATC 1 cut(s) 46
BciT130I CCWGG 3 cut(s) 180, 207, 321
BcoDI GTCTC 3 cut(s) 177, 402, 462
BfaI CTAG 3 cut(s) 257, 368, 456
BfmI CTRYAG 1 cut(s) 75
BisI GCNGC 3 cut(s) 141, 336, 549
BlsI GCNGC 3 cut(s) 142, 337, 550
BmcAI AGTACT 1 cut(s) 377
Bme1390I CCNGG 3 cut(s) 180, 207, 321
BmgT120I GGNCC 1 cut(s) 420
BmiI GGNNCC 5 cut(s) 50, 264, 385, 422, 544
BmrFI CCNGG 3 cut(s) 180, 207, 321
BmsI GCATC 1 cut(s) 288
BmtI GCTAGC 1 cut(s) 371
BpmI CTGGAG 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 440
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 266
Bse21I CCTNAGG 1 cut(s) 416
BseAI TCCGGA 1 cut(s) 440
BseBI CCWGG 3 cut(s) 180, 207, 321
BseNI ACTGG 1 cut(s) 266
BseXI GCAGC 1 cut(s) 322
BshFI GGCC 2 cut(s) 140, 421
BshNI GGYRCC 3 cut(s) 262, 383, 542
BsiSI CCGG 2 cut(s) 192, 441
BsmAI GTCTC 3 cut(s) 177, 402, 462
BsnI GGCC 2 cut(s) 140, 421
Bsp1286I GDGCHC 1 cut(s) 129
Bsp13I TCCGGA 1 cut(s) 440
Bsp143I GATC 3 cut(s) 13, 48, 57
BspACI CCGC 4 cut(s) 17, 141, 260, 546
BspANI GGCC 2 cut(s) 140, 421
BspEI TCCGGA 1 cut(s) 440
BspLI GGNNCC 5 cut(s) 50, 264, 385, 422, 544
BspMAI CTGCAG 1 cut(s) 79
BspOI GCTAGC 1 cut(s) 371
BspPI GGATC 4 cut(s) 8, 43, 52, 56
BspQI GCTCTTC 1 cut(s) 345
BspT107I GGYRCC 3 cut(s) 262, 383, 542
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 1 cut(s) 266
BssAI RCCGGY 1 cut(s) 191
BssMI GATC 3 cut(s) 13, 48, 57
Bst2UI CCWGG 3 cut(s) 180, 207, 321
Bst4CI ACNGT 1 cut(s) 249
Bst6I CTCTTC 1 cut(s) 345
BstC8I GCNNGC 2 cut(s) 226, 369
BstDEI CTNAG 2 cut(s) 100, 416
BstKTI GATC 3 cut(s) 16, 51, 60
BstMAI GTCTC 3 cut(s) 177, 402, 462
BstMBI GATC 3 cut(s) 13, 48, 57
BstMWI GCNNNNNNNGC 3 cut(s) 83, 149, 368
BstNI CCWGG 3 cut(s) 180, 207, 321
BstNSI RCATGY 1 cut(s) 501
BstSCI CCNGG 3 cut(s) 178, 205, 319
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 322
BstX2I RGATCY 3 cut(s) 13, 48, 57
BstXI CCANNNNNNTGG 1 cut(s) 136
BstYI RGATCY 3 cut(s) 13, 48, 57
Bsu36I CCTNAGG 1 cut(s) 416
BsuRI GGCC 2 cut(s) 140, 421
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 2 cut(s) 226, 369
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 420
Csp6I GTAC 4 cut(s) 69, 245, 263, 376
CviAII CATG 3 cut(s) 53, 363, 498
CviQI GTAC 4 cut(s) 69, 245, 263, 376
DdeI CTNAG 2 cut(s) 100, 416
DpnI GATC 3 cut(s) 15, 50, 59
DpnII GATC 3 cut(s) 13, 48, 57
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
EciI GGCGGA 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 129
Eco81I CCTNAGG 1 cut(s) 416
EcoO109I RGGNCCY 1 cut(s) 420
EcoRII CCWGG 3 cut(s) 178, 205, 319
EcoT22I ATGCAT 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 129
FaeI CATG 3 cut(s) 56, 366, 501
FaiI YATR 7 cut(s) 54, 122, 354, 360, 364, 428, 499
FatI CATG 3 cut(s) 52, 362, 497
Fnu4HI GCNGC 3 cut(s) 141, 336, 549
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 3 cut(s) 141, 336, 549
FspBI CTAG 3 cut(s) 257, 368, 456
GluI GCNGC 3 cut(s) 141, 336, 549
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 2 cut(s) 140, 421
HapII CCGG 2 cut(s) 192, 441
Hin1II CATG 3 cut(s) 56, 366, 501
HinfI GANTC 3 cut(s) 199, 470, 503
HpaII CCGG 2 cut(s) 192, 441
HphI GGTGA 1 cut(s) 125
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 1 cut(s) 441
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 2 cut(s) 77, 362
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 149, 368
HpyF3I CTNAG 2 cut(s) 100, 416
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 3 cut(s) 56, 366, 501
Kpn2I TCCGGA 1 cut(s) 440
KpnI GGTACC 1 cut(s) 266
Kzo9I GATC 3 cut(s) 13, 48, 57
LguI GCTCTTC 1 cut(s) 345
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 1 cut(s) 288
MaeI CTAG 3 cut(s) 257, 368, 456
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 234
MalI GATC 3 cut(s) 15, 50, 59
MboI GATC 3 cut(s) 13, 48, 57
MboII GAAGA 2 cut(s) 128, 332
MflI RGATCY 3 cut(s) 13, 48, 57
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 1 cut(s) 325
MlyI GAGTC 1 cut(s) 464
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 6 cut(s) 88, 92, 520, 524, 534, 538
Mph1103I ATGCAT 1 cut(s) 364
MroI TCCGGA 1 cut(s) 440
MseI TTAA 1 cut(s) 33
MspI CCGG 2 cut(s) 192, 441
MspR9I CCNGG 3 cut(s) 180, 207, 321
MvaI CCWGG 3 cut(s) 180, 207, 321
MwoI GCNNNNNNNGC 3 cut(s) 83, 149, 368
NdeII GATC 3 cut(s) 13, 48, 57
NheI GCTAGC 1 cut(s) 367
NlaIII CATG 3 cut(s) 56, 366, 501
NlaIV GGNNCC 5 cut(s) 50, 264, 385, 422, 544
NmeAIII GCCGAG 1 cut(s) 311
NmuCI GTSAC 1 cut(s) 234
NsiI ATGCAT 1 cut(s) 364
NspI RCATGY 1 cut(s) 501
PciI ACATGT 1 cut(s) 497
PciSI GCTCTTC 1 cut(s) 345
PfeI GAWTC 2 cut(s) 199, 503
PfoI TCCNGGA 1 cut(s) 205
PkrI GCNGC 3 cut(s) 142, 337, 550
PleI GAGTC 1 cut(s) 464
PpsI GAGTC 1 cut(s) 464
PscI ACATGT 1 cut(s) 497
Psp6I CCWGG 3 cut(s) 178, 205, 319
PspGI CCWGG 3 cut(s) 178, 205, 319
PspN4I GGNNCC 5 cut(s) 50, 264, 385, 422, 544
PspPI GGNCC 1 cut(s) 420
PstI CTGCAG 1 cut(s) 79
PsuI RGATCY 3 cut(s) 13, 48, 57
RsaI GTAC 4 cut(s) 70, 246, 264, 377
RsaNI GTAC 4 cut(s) 69, 245, 263, 376
SapI GCTCTTC 1 cut(s) 345
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 3 cut(s) 141, 336, 549
Sau3AI GATC 3 cut(s) 13, 48, 57
Sau96I GGNCC 1 cut(s) 420
ScaI AGTACT 1 cut(s) 377
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 3 cut(s) 180, 207, 321
SduI GDGCHC 1 cut(s) 129
SfaNI GCATC 1 cut(s) 288
SfcI CTRYAG 1 cut(s) 75
Sse9I AATT 1 cut(s) 325
SsiI CCGC 4 cut(s) 17, 141, 260, 546
SspMI CTAG 3 cut(s) 257, 368, 456
StyD4I CCNGG 3 cut(s) 178, 205, 319
TaaI ACNGT 1 cut(s) 249
TaiI ACGT 1 cut(s) 70
TaqI TCGA 1 cut(s) 492
TasI AATT 1 cut(s) 325
TatI WGTACW 1 cut(s) 375
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 2 cut(s) 199, 503
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 1 cut(s) 234
TseI GCWGC 2 cut(s) 335, 548
Tsp45I GTSAC 1 cut(s) 234
TspDTI ATGAA 2 cut(s) 17, 338
TspRI CASTG 1 cut(s) 273
XceI RCATGY 1 cut(s) 501
XspI CTAG 3 cut(s) 257, 368, 456
ZrmI AGTACT 1 cut(s) 377
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.