Rmu_sc0006725.1_g000014

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006725.1
OG0000179
Physical Location & Seq
Forward (+)
56463 .. 57682
1220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006725.1_g000014.1.cds

Sequence Viewer

Length: 780 bp
atgagtgtttggatttttccaacaattgaagaacgcaaacgacctaagtgcttagatttttccacttttcgatcatgggaaaatcctctcaaagcagttaggctttgcgtgtttgtcgatgtcaaggagaagaacgtgaatgtcctaagcgcttggattcctccacctttgctcgtggtaggatccactaaaagcggcacttgcgatcgctcttctcgtcctttaatggcgatggctttctttaagtgcttcaagaaagggacagtcacaatcctcgaggatccggaggacacccaaagtgatggcactactctgcaggtgtatccatcgttgactgggcctcaagcaatcgatgtccctccttatgatccttccgctaacaacctccagtggactcatgtggctccacgccaactagctaaacagagatctggccacgacaaacaaagctcaaacgtgttgttattgaggtcttcgaatcatgatcagaacaaccctcaggtcccattcacacttctcagcgatcgtatatgcaatgctgctgaagagctttctgcaacaagcaaagggagtcaacagagctgccgctatttgtttctcgcctaccataagctctacaaagaaggtcaagggcagaaagtgaagataacttcatggatacgatatgggtatagaggagctttgagctataagaggcctctgaacaaaagcaccaggaacaaaagagatccgccctcgaatgcgtttaattcatctggcaagatccatgagatcctataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

259

Amino Acids

29.25

Weight (kDa)

9.61

Isoelectric Point (pI)

55.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 307
AbsI CCTCGAGG 1 cut(s) 275
Acc36I ACCTGC 1 cut(s) 307
AccIII TCCGGA 1 cut(s) 283
AciI CCGC 4 cut(s) 195, 375, 586, 731
AclWI GGATC 8 cut(s) 177, 190, 275, 288, 362, 722, 757, 766
AcoI YGGCCR 1 cut(s) 433
AcuI CTGAAG 1 cut(s) 564
AfeI AGCGCT 1 cut(s) 151
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 2 cut(s) 29, 253
AjnI CCWGG 1 cut(s) 713
AluBI AGCT 7 cut(s) 419, 450, 550, 582, 613, 680, 687
AluI AGCT 7 cut(s) 419, 450, 550, 582, 613, 680, 687
AlwI GGATC 8 cut(s) 177, 190, 275, 288, 362, 722, 757, 766
Ama87I CYCGRG 1 cut(s) 275
Aor13HI TCCGGA 1 cut(s) 283
Aor51HI AGCGCT 1 cut(s) 151
AoxI GGCC 3 cut(s) 338, 433, 695
ApeKI GCWGC 2 cut(s) 539, 582
AsiSI GCGATCGC 1 cut(s) 208
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 2 cut(s) 338, 502
AsuII TTCGAA 1 cut(s) 476
AvaI CYCGRG 1 cut(s) 275
AvaII GGWCC 1 cut(s) 502
AxyI CCTNAGG 1 cut(s) 498
BalI TGGCCA 1 cut(s) 435
BamHI GGATCC 2 cut(s) 182, 280
BauI CACGAG 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 465
BbvI GCAGC 2 cut(s) 526, 569
BccI CCATC 3 cut(s) 226, 296, 334
BcgI CGANNNNNNTGC 2 cut(s) 30, 64
BciT130I CCWGG 1 cut(s) 715
BciVI GTATCC 2 cut(s) 333, 651
BclI TGATCA 1 cut(s) 484
BfaI CTAG 1 cut(s) 416
BfmI CTRYAG 1 cut(s) 314
BfoI RGCGCY 1 cut(s) 153
BfuAI ACCTGC 1 cut(s) 307
BfuI GTATCC 2 cut(s) 333, 651
BglII AGATCT 1 cut(s) 428
BisI GCNGC 4 cut(s) 196, 540, 583, 586
BlsI GCNGC 4 cut(s) 197, 541, 584, 587
Bme1390I CCNGG 1 cut(s) 715
Bme18I GGWCC 1 cut(s) 502
BmeT110I CYCGRG 1 cut(s) 275
BmgT120I GGNCC 2 cut(s) 338, 502
BmiI GGNNCC 4 cut(s) 184, 282, 405, 504
BmrFI CCNGG 1 cut(s) 715
BmrI ACTGGG 1 cut(s) 345
BmuI ACTGGG 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 465
BpmI CTGGAG 1 cut(s) 371
Bpu10I CCTNAGC 1 cut(s) 146
Bpu14I TTCGAA 1 cut(s) 476
BpuEI CTTGAG 1 cut(s) 327
Bsa29I ATCGAT 1 cut(s) 351
BsaWI WCCGGW 1 cut(s) 283
Bse1I ACTGG 2 cut(s) 340, 388
Bse21I CCTNAGG 1 cut(s) 498
Bse3DI GCAATG 1 cut(s) 541
BseAI TCCGGA 1 cut(s) 283
BseBI CCWGG 1 cut(s) 715
BseCI ATCGAT 1 cut(s) 351
BseMI GCAATG 1 cut(s) 541
BseMII CTCAG 2 cut(s) 512, 532
BseNI ACTGG 2 cut(s) 340, 388
BseRI GAGGAG 1 cut(s) 690
BseXI GCAGC 2 cut(s) 526, 569
Bsh1285I CGRYCG 2 cut(s) 208, 526
BshFI GGCC 3 cut(s) 340, 435, 697
BshVI ATCGAT 1 cut(s) 351
BsiEI CGRYCG 2 cut(s) 208, 526
BsiHKCI CYCGRG 1 cut(s) 275
BsiSI CCGG 1 cut(s) 284
BslFI GGGAC 3 cut(s) 274, 341, 488
BsmFI GGGAC 3 cut(s) 274, 341, 488
BsmI GAATGC 1 cut(s) 745
BsnI GGCC 3 cut(s) 340, 435, 697
BsoBI CYCGRG 1 cut(s) 275
Bsp119I TTCGAA 1 cut(s) 476
Bsp13I TCCGGA 1 cut(s) 283
BspACI CCGC 4 cut(s) 195, 375, 586, 731
BspANI GGCC 3 cut(s) 340, 435, 697
BspCNI CTCAG 2 cut(s) 511, 531
BspDI ATCGAT 1 cut(s) 351
BspEI TCCGGA 1 cut(s) 283
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 4 cut(s) 184, 282, 405, 504
BspMAI CTGCAG 1 cut(s) 318
BspMI ACCTGC 1 cut(s) 307
BspPI GGATC 8 cut(s) 177, 190, 275, 288, 362, 722, 757, 766
BspQI GCTCTTC 2 cut(s) 217, 540
BspT104I TTCGAA 1 cut(s) 476
BsrDI GCAATG 1 cut(s) 541
BsrI ACTGG 2 cut(s) 340, 388
BssSI CACGAG 1 cut(s) 173
Bst2BI CACGAG 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 715
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 2 cut(s) 217, 540
BstBI TTCGAA 1 cut(s) 476
BstDEI CTNAG 5 cut(s) 45, 52, 146, 498, 518
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstMCI CGRYCG 2 cut(s) 208, 526
BstMWI GCNNNNNNNGC 1 cut(s) 201
BstNI CCWGG 1 cut(s) 715
BstSCI CCNGG 1 cut(s) 713
BstSFI CTRYAG 1 cut(s) 314
BstV1I GCAGC 2 cut(s) 526, 569
BstV2I GAAGAC 1 cut(s) 465
BstX2I RGATCY 6 cut(s) 182, 280, 428, 727, 762, 771
BstXI CCANNNNNNTGG 1 cut(s) 302
BstYI RGATCY 6 cut(s) 182, 280, 428, 727, 762, 771
Bsu15I ATCGAT 1 cut(s) 351
Bsu36I CCTNAGG 1 cut(s) 498
BsuI GTATCC 2 cut(s) 333, 651
BsuRI GGCC 3 cut(s) 340, 435, 697
BsuTUI ATCGAT 1 cut(s) 351
BtgZI GCGATG 1 cut(s) 245
BtsIMutI CAGTG 1 cut(s) 395
BveI ACCTGC 1 cut(s) 307
CciI TCATGA 1 cut(s) 481
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 2 cut(s) 338, 502
ClaI ATCGAT 1 cut(s) 351
CviAII CATG 5 cut(s) 75, 398, 482, 654, 767
DdeI CTNAG 5 cut(s) 45, 52, 146, 498, 518
EaeI YGGCCR 1 cut(s) 433
Eam1104I CTCTTC 2 cut(s) 217, 540
EarI CTCTTC 2 cut(s) 217, 540
EciI GGCGGA 1 cut(s) 720
Eco147I AGGCCT 1 cut(s) 697
Eco47I GGWCC 1 cut(s) 502
Eco47III AGCGCT 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 564
Eco81I CCTNAGG 1 cut(s) 498
Eco88I CYCGRG 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 713
FaeI CATG 5 cut(s) 78, 401, 485, 657, 770
FalI AAGNNNNNCTT 2 cut(s) 184, 216
FaqI GGGAC 3 cut(s) 274, 341, 488
FatI CATG 5 cut(s) 74, 397, 481, 653, 766
FbaI TGATCA 1 cut(s) 484
Fnu4HI GCNGC 4 cut(s) 196, 540, 583, 586
Fsp4HI GCNGC 4 cut(s) 196, 540, 583, 586
FspBI CTAG 1 cut(s) 416
GlaI GCGC 1 cut(s) 151
GluI GCNGC 4 cut(s) 196, 540, 583, 586
GsuI CTGGAG 1 cut(s) 371
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 3 cut(s) 340, 435, 697
HapII CCGG 1 cut(s) 284
HhaI GCGC 1 cut(s) 152
Hin1II CATG 5 cut(s) 78, 401, 485, 657, 770
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 2 cut(s) 333, 575
HindII GTYRAC 2 cut(s) 333, 575
HinfI GANTC 4 cut(s) 157, 394, 478, 571
HpaII CCGG 1 cut(s) 284
Hpy166II GTNNAC 3 cut(s) 333, 393, 575
Hpy188I TCNGA 2 cut(s) 489, 702
Hpy188III TCNNGA 3 cut(s) 253, 284, 482
Hpy8I GTNNAC 3 cut(s) 333, 393, 575
HpyAV CCTTC 2 cut(s) 381, 617
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 2 cut(s) 135, 456
HpyCH4V TGCA 3 cut(s) 316, 534, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 201
HpyF3I CTNAG 5 cut(s) 45, 52, 146, 498, 518
HpySE526I ACGT 2 cut(s) 135, 456
Hsp92II CATG 5 cut(s) 78, 401, 485, 657, 770
HspAI GCGC 1 cut(s) 150
Kpn2I TCCGGA 1 cut(s) 283
Ksp22I TGATCA 1 cut(s) 484
LguI GCTCTTC 2 cut(s) 217, 540
LmnI GCTCC 2 cut(s) 409, 677
LpnPI CCDG 9 cut(s) 297, 302, 321, 401, 417, 485, 700, 727, 741
Lsp1109I GCAGC 2 cut(s) 526, 569
MaeI CTAG 1 cut(s) 416
MaeII ACGT 2 cut(s) 135, 456
MaeIII GTNAC 1 cut(s) 265
MboII GAAGA 6 cut(s) 41, 142, 204, 465, 557, 655
MfeI CAATTG 1 cut(s) 24
MflI RGATCY 6 cut(s) 182, 280, 428, 727, 762, 771
MlsI TGGCCA 1 cut(s) 435
MluCI AATT 2 cut(s) 24, 748
MluNI TGGCCA 1 cut(s) 435
MlyI GAGTC 2 cut(s) 388, 580
MmeI TCCRAC 1 cut(s) 44
Mox20I TGGCCA 1 cut(s) 435
MroI TCCGGA 1 cut(s) 283
MscI TGGCCA 1 cut(s) 435
MseI TTAA 3 cut(s) 224, 243, 747
Msp20I TGGCCA 1 cut(s) 435
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 715
MunI CAATTG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 745
MvaI CCWGG 1 cut(s) 715
MwoI GCNNNNNNNGC 1 cut(s) 201
NlaIII CATG 5 cut(s) 78, 401, 485, 657, 770
NlaIV GGNNCC 4 cut(s) 184, 282, 405, 504
NmuCI GTSAC 1 cut(s) 265
NspV TTCGAA 1 cut(s) 476
PaeR7I CTCGAG 1 cut(s) 275
PagI TCATGA 1 cut(s) 481
PaqCI CACCTGC 1 cut(s) 307
PceI AGGCCT 1 cut(s) 697
PciSI GCTCTTC 2 cut(s) 217, 540
PcsI WCGNNNNNNNCGW 1 cut(s) 214
PctI GAATGC 1 cut(s) 745
PfeI GAWTC 2 cut(s) 157, 478
PkrI GCNGC 4 cut(s) 197, 541, 584, 587
Ple19I CGATCG 2 cut(s) 208, 526
PleI GAGTC 2 cut(s) 388, 579
PpsI GAGTC 2 cut(s) 388, 579
PpuMI RGGWCCY 1 cut(s) 502
Psp5II RGGWCCY 1 cut(s) 502
Psp6I CCWGG 1 cut(s) 713
PspGI CCWGG 1 cut(s) 713
PspN4I GGNNCC 4 cut(s) 184, 282, 405, 504
PspPI GGNCC 2 cut(s) 338, 502
PspPPI RGGWCCY 1 cut(s) 502
PspXI VCTCGAGB 1 cut(s) 275
PstI CTGCAG 1 cut(s) 318
PsuI RGATCY 6 cut(s) 182, 280, 428, 727, 762, 771
PvuI CGATCG 2 cut(s) 208, 526
RgaI GCGATCGC 1 cut(s) 208
SapI GCTCTTC 2 cut(s) 217, 540
SaqAI TTAA 3 cut(s) 224, 243, 747
SatI GCNGC 4 cut(s) 196, 540, 583, 586
Sau96I GGNCC 2 cut(s) 338, 502
SchI GAGTC 2 cut(s) 388, 580
ScrFI CCNGG 1 cut(s) 715
SfaAI GCGATCGC 1 cut(s) 208
SfcI CTRYAG 1 cut(s) 314
Sfr274I CTCGAG 1 cut(s) 275
SfuI TTCGAA 1 cut(s) 476
SgfI GCGATCGC 1 cut(s) 208
SinI GGWCC 1 cut(s) 502
SlaI CTCGAG 1 cut(s) 275
SmlI CTYRAG 2 cut(s) 275, 342
SmoI CTYRAG 2 cut(s) 275, 342
Sse9I AATT 2 cut(s) 24, 748
SseBI AGGCCT 1 cut(s) 697
SsiI CCGC 4 cut(s) 195, 375, 586, 731
SspMI CTAG 1 cut(s) 416
StuI AGGCCT 1 cut(s) 697
StyD4I CCNGG 1 cut(s) 713
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 2 cut(s) 138, 459
TaqI TCGA 6 cut(s) 70, 117, 276, 351, 476, 737
TasI AATT 2 cut(s) 24, 748
TauI GCSGC 2 cut(s) 198, 588
TfiI GAWTC 2 cut(s) 157, 478
Tru1I TTAA 3 cut(s) 224, 243, 747
Tru9I TTAA 3 cut(s) 224, 243, 747
TscAI CASTG 1 cut(s) 395
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 2 cut(s) 539, 582
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 2 cut(s) 642, 741
TspRI CASTG 1 cut(s) 395
VpaK11BI GGWCC 1 cut(s) 502
XhoI CTCGAG 1 cut(s) 275
XspI CTAG 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.