Rmu_sc0006746.1_g000016

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006746.1
OG0000179
Physical Location & Seq
Reverse (-)
89949 .. 90682
734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006746.1_g000016.1.cds

Sequence Viewer

Length: 651 bp
atggctttcttcaagtgcttcaagaaagggacagtcaccaacctcgacgatctggaggacactcaaagtgatggcactactctacaggtgtatccatcgttgactgggcctcaaccgatcgacgtacctccttatgacccttcagctcacaccctccagtggactcatgtagcacctcgccaactagccatgttccaacaaccgagatctggcagagatcaacaaaactcgcatgtacttgaagtggagcagtgcatttcgtgcaaatggggcttctcttacacagagttctattgggaatgggtagaagatatcttaagcaagaatgacaagcttactcgggaggccgatctctatcgagcgatattcacctcactattcagctatgaccatgttacacctgtcatacgggctttctgcaagcactggtgccccacgacgaataccctccacacttctagcggggaaatgtccacctccctgtgggatttggaccaacttggaggcgtgcccattgccggacgattttatgatgaggttgttccagctgttgaagagctttctgcaacaagcaaaggagtcaacagagctgccgctatttgtttctcgcctaccataagctctacaaagaaggccaatggcagaaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

216

Amino Acids

24.34

Weight (kDa)

5.66

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 429
AciI CCGC 2 cut(s) 462, 594
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 2 cut(s) 126, 237
AfiI CCNNNNNNNGG 4 cut(s) 159, 209, 483, 518
AflII CTTAAG 1 cut(s) 316
AgsI TTSAA 4 cut(s) 13, 22, 242, 554
AluBI AGCT 7 cut(s) 146, 334, 384, 548, 559, 590, 621
AluI AGCT 7 cut(s) 146, 334, 384, 548, 559, 590, 621
Ama87I CYCGRG 1 cut(s) 339
AoxI GGCC 3 cut(s) 107, 345, 633
ApeKI GCWGC 1 cut(s) 590
AspS9I GGNCC 2 cut(s) 107, 493
AsuHPI GGTGA 2 cut(s) 28, 361
AvaI CYCGRG 1 cut(s) 339
AvaII GGWCC 1 cut(s) 493
BaeGI GKGCMC 2 cut(s) 434, 513
BaeI ACNNNNGTAYC 2 cut(s) 74, 107
BanI GGYRCC 1 cut(s) 429
BbvI GCAGC 1 cut(s) 577
BccI CCATC 2 cut(s) 65, 103
BciVI GTATCC 1 cut(s) 102
BfaI CTAG 2 cut(s) 185, 459
BfmI CTRYAG 1 cut(s) 83
BfrI CTTAAG 1 cut(s) 316
BfuI GTATCC 1 cut(s) 102
BglII AGATCT 1 cut(s) 206
BisI GCNGC 2 cut(s) 591, 594
BlsI GCNGC 2 cut(s) 592, 595
Bme18I GGWCC 1 cut(s) 493
BmeT110I CYCGRG 1 cut(s) 339
BmgT120I GGNCC 2 cut(s) 107, 493
BmiI GGNNCC 1 cut(s) 431
BmrI ACTGGG 1 cut(s) 114
BmuI ACTGGG 1 cut(s) 114
BpmI CTGGAG 2 cut(s) 74, 140
BsaBI GATNNNNATC 1 cut(s) 354
Bsc4I CCNNNNNNNGG 4 cut(s) 159, 209, 483, 518
Bse1I ACTGG 3 cut(s) 109, 157, 431
Bse3DI GCAATG 1 cut(s) 513
Bse8I GATNNNNATC 1 cut(s) 354
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 4 cut(s) 159, 209, 483, 518
BseMI GCAATG 1 cut(s) 513
BseNI ACTGG 3 cut(s) 109, 157, 431
BseSI GKGCMC 2 cut(s) 434, 513
BseXI GCAGC 1 cut(s) 577
Bsh1285I CGRYCG 1 cut(s) 120
BshFI GGCC 3 cut(s) 109, 347, 635
BshNI GGYRCC 1 cut(s) 429
BsiEI CGRYCG 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 339
BsiSI CCGG 1 cut(s) 519
BslFI GGGAC 1 cut(s) 43
BslI CCNNNNNNNGG 4 cut(s) 159, 209, 483, 518
BsmFI GGGAC 1 cut(s) 43
BsnI GGCC 3 cut(s) 109, 347, 635
BsoBI CYCGRG 1 cut(s) 339
Bsp1286I GDGCHC 2 cut(s) 434, 513
Bsp143I GATC 5 cut(s) 49, 117, 206, 217, 349
BspACI CCGC 2 cut(s) 462, 594
BspANI GGCC 3 cut(s) 109, 347, 635
BspLI GGNNCC 1 cut(s) 431
BspQI GCTCTTC 1 cut(s) 549
BspT107I GGYRCC 1 cut(s) 429
BspTI CTTAAG 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 513
BsrI ACTGG 3 cut(s) 109, 157, 431
BssMI GATC 5 cut(s) 49, 117, 206, 217, 349
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 549
BstAFI CTTAAG 1 cut(s) 316
BstAPI GCANNNNNTGC 1 cut(s) 261
BstC8I GCNNGC 2 cut(s) 422, 509
BstKTI GATC 5 cut(s) 52, 120, 209, 220, 352
BstMBI GATC 5 cut(s) 49, 117, 206, 217, 349
BstMCI CGRYCG 1 cut(s) 120
BstMWI GCNNNNNNNGC 2 cut(s) 261, 270
BstNSI RCATGY 1 cut(s) 236
BstSFI CTRYAG 1 cut(s) 83
BstSLI GKGCMC 2 cut(s) 434, 513
BstV1I GCAGC 1 cut(s) 577
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BsuI GTATCC 1 cut(s) 102
BsuRI GGCC 3 cut(s) 109, 347, 635
BtsI GCAGTG 1 cut(s) 257
BtsIMutI CAGTG 3 cut(s) 164, 257, 424
Cac8I GCNNGC 2 cut(s) 422, 509
Cfr13I GGNCC 2 cut(s) 107, 493
Csp6I GTAC 2 cut(s) 125, 236
CviAII CATG 4 cut(s) 167, 190, 233, 392
CviQI GTAC 2 cut(s) 125, 236
DpnI GATC 5 cut(s) 51, 119, 208, 219, 351
DpnII GATC 5 cut(s) 49, 117, 206, 217, 349
Eam1104I CTCTTC 1 cut(s) 549
EarI CTCTTC 1 cut(s) 549
Eco32I GATATC 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 493
Eco57I CTGAAG 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 339
EcoRV GATATC 1 cut(s) 313
FaeI CATG 4 cut(s) 170, 193, 236, 395
FaiI YATR 9 cut(s) 135, 168, 191, 234, 387, 393, 407, 531, 617
FaqI GGGAC 1 cut(s) 43
FatI CATG 4 cut(s) 166, 189, 232, 391
FauI CCCGC 1 cut(s) 455
Fnu4HI GCNGC 2 cut(s) 591, 594
Fsp4HI GCNGC 2 cut(s) 591, 594
FspBI CTAG 2 cut(s) 185, 459
GluI GCNGC 2 cut(s) 591, 594
GsuI CTGGAG 2 cut(s) 74, 140
HaeIII GGCC 3 cut(s) 109, 347, 635
HapII CCGG 1 cut(s) 519
Hin1II CATG 4 cut(s) 170, 193, 236, 395
HincII GTYRAC 2 cut(s) 102, 583
HindII GTYRAC 2 cut(s) 102, 583
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 2 cut(s) 163, 579
HpaII CCGG 1 cut(s) 519
HphI GGTGA 2 cut(s) 28, 361
Hpy166II GTNNAC 4 cut(s) 102, 162, 474, 583
Hpy188III TCNNGA 3 cut(s) 22, 53, 341
Hpy8I GTNNAC 4 cut(s) 102, 162, 474, 583
Hpy99I CGWCG 3 cut(s) 50, 125, 442
HpyAV CCTTC 2 cut(s) 150, 625
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 4 cut(s) 255, 264, 420, 566
HpyF10VI GCNNNNNNNGC 2 cut(s) 261, 270
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 4 cut(s) 170, 193, 236, 395
Kzo9I GATC 5 cut(s) 49, 117, 206, 217, 349
LguI GCTCTTC 1 cut(s) 549
LmnI GCTCC 1 cut(s) 247
Lsp1109I GCAGC 1 cut(s) 577
MaeI CTAG 2 cut(s) 185, 459
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 2 cut(s) 34, 394
MalI GATC 5 cut(s) 51, 119, 208, 219, 351
MboI GATC 5 cut(s) 49, 117, 206, 217, 349
MboII GAAGA 2 cut(s) 320, 566
MflI RGATCY 1 cut(s) 206
MhlI GDGCHC 2 cut(s) 434, 513
MlyI GAGTC 2 cut(s) 157, 588
MmeI TCCRAC 1 cut(s) 220
MseI TTAA 1 cut(s) 317
MspA1I CMGCKG 1 cut(s) 548
MspCI CTTAAG 1 cut(s) 316
MspI CCGG 1 cut(s) 519
MwoI GCNNNNNNNGC 2 cut(s) 261, 270
NdeII GATC 5 cut(s) 49, 117, 206, 217, 349
NlaIII CATG 4 cut(s) 170, 193, 236, 395
NlaIV GGNNCC 1 cut(s) 431
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 1 cut(s) 236
PciSI GCTCTTC 1 cut(s) 549
PkrI GCNGC 2 cut(s) 592, 595
Ple19I CGATCG 1 cut(s) 120
PleI GAGTC 2 cut(s) 157, 587
PpsI GAGTC 2 cut(s) 157, 587
PspN4I GGNNCC 1 cut(s) 431
PspPI GGNCC 2 cut(s) 107, 493
PsuI RGATCY 1 cut(s) 206
PvuI CGATCG 1 cut(s) 120
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 2 cut(s) 126, 237
RsaNI GTAC 2 cut(s) 125, 236
SapI GCTCTTC 1 cut(s) 549
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 2 cut(s) 591, 594
Sau3AI GATC 5 cut(s) 49, 117, 206, 217, 349
Sau96I GGNCC 2 cut(s) 107, 493
SchI GAGTC 2 cut(s) 157, 588
SduI GDGCHC 2 cut(s) 434, 513
SfcI CTRYAG 1 cut(s) 83
SinI GGWCC 1 cut(s) 493
SmlI CTYRAG 1 cut(s) 316
SmoI CTYRAG 1 cut(s) 316
SsiI CCGC 2 cut(s) 462, 594
SspMI CTAG 2 cut(s) 185, 459
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 1 cut(s) 126
TaqI TCGA 3 cut(s) 45, 120, 358
TatI WGTACW 1 cut(s) 235
TauI GCSGC 1 cut(s) 596
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 3 cut(s) 164, 257, 431
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 590
Tsp45I GTSAC 1 cut(s) 34
TspRI CASTG 3 cut(s) 164, 257, 431
Vha464I CTTAAG 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 493
XceI RCATGY 1 cut(s) 236
XspI CTAG 2 cut(s) 185, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.