Rmu_co8112106.1_g000001

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8112106.1
OG0000179
Physical Location & Seq
Reverse (-)
2 .. 564
563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8112106.1_g000001.1.cds

Sequence Viewer

Length: 500 bp
atggatgcatttgccagggtattttcggagagcaaagtgattatcaaccgcgagaacatctcccatttagacctcatatatctcatcagccttcgatctagtcgacagtttggttatgtccaagacgttcctggcagtcttaagaatgacattcgcaccagcgtattggctttgatttataagcattgggattcttgcaccagaatgaacaccaagtgtgcggtaacgttgccgacccagagtgctatcacggagtacatggttactcgagactatgtcgactggtggtctaaagtgtactattctacactagtgaaagcaacgaaagaagcgcctactagtagaccactgcacaagactctgaaagcaaaagaagataagaacgtcatccgtgcaacacctcctcatcacaaaaatgtaattcctcgtgaagttgaatgtagcaccaacgtccctgcgcctcctaataggactttgcttcctagtagtgattgccagac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

167

Amino Acids

19.07

Weight (kDa)

9.32

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
AccI GTMKAC 3 cut(s) 103, 279, 343
AccII CGCG 1 cut(s) 51
AciI CCGC 2 cut(s) 49, 221
AclI AACGTT 1 cut(s) 227
AdeI CACNNNGTG 1 cut(s) 216
AfaI GTAC 2 cut(s) 257, 299
AflII CTTAAG 1 cut(s) 140
AgsI TTSAA 1 cut(s) 437
AhdI GACNNNNNGTC 1 cut(s) 286
AhlI ACTAGT 2 cut(s) 310, 338
AjnI CCWGG 2 cut(s) 14, 130
Alw26I GTCTC 1 cut(s) 264
Ama87I CYCGRG 1 cut(s) 267
AspLEI GCGC 2 cut(s) 334, 460
AvaI CYCGRG 1 cut(s) 267
BauI CACGAG 1 cut(s) 426
BciT130I CCWGG 2 cut(s) 16, 132
BcoDI GTCTC 1 cut(s) 264
BcuI ACTAGT 2 cut(s) 310, 338
BfaI CTAG 4 cut(s) 99, 311, 339, 483
BfoI RGCGCY 1 cut(s) 335
BfrI CTTAAG 1 cut(s) 140
Bme1390I CCNGG 2 cut(s) 16, 132
BmeRI GACNNNNNGTC 1 cut(s) 286
BmeT110I CYCGRG 1 cut(s) 267
BmrFI CCNGG 2 cut(s) 16, 132
BplI GAGNNNNNCTC 2 cut(s) 44, 76
BsaJI CCNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 287
BseBI CCWGG 2 cut(s) 16, 132
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 2 cut(s) 10, 387
BseNI ACTGG 1 cut(s) 287
BseRI GAGGAG 1 cut(s) 393
BsgI GTGCAG 1 cut(s) 335
Bsh1236I CGCG 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 267
BslFI GGGAC 1 cut(s) 437
BsmAI GTCTC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 437
BsoBI CYCGRG 1 cut(s) 267
Bsp143I GATC 1 cut(s) 95
BspACI CCGC 2 cut(s) 49, 221
BspFNI CGCG 1 cut(s) 51
BspTI CTTAAG 1 cut(s) 140
BsrI ACTGG 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 1 cut(s) 95
BssSI CACGAG 1 cut(s) 426
Bst2BI CACGAG 1 cut(s) 426
Bst2UI CCWGG 2 cut(s) 16, 132
Bst4CI ACNGT 1 cut(s) 108
BstAFI CTTAAG 1 cut(s) 140
BstF5I GGATG 2 cut(s) 10, 387
BstFNI CGCG 1 cut(s) 51
BstH2I RGCGCY 1 cut(s) 335
BstHHI GCGC 2 cut(s) 334, 460
BstKTI GATC 1 cut(s) 98
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 1 cut(s) 95
BstNI CCWGG 2 cut(s) 16, 132
BstSCI CCNGG 2 cut(s) 14, 130
BstUI CGCG 1 cut(s) 51
BstXI CCANNNNNNTGG 1 cut(s) 166
BtsCI GGATG 2 cut(s) 10, 387
BtsI GCAGTG 1 cut(s) 347
BtsIMutI CAGTG 1 cut(s) 347
CfoI GCGC 2 cut(s) 334, 460
Csp6I GTAC 2 cut(s) 256, 298
CviAII CATG 1 cut(s) 259
CviJI RGCY 2 cut(s) 90, 170
CviKI_1 RGCY 2 cut(s) 90, 170
CviQI GTAC 2 cut(s) 256, 298
DpnI GATC 1 cut(s) 97
DpnII GATC 1 cut(s) 95
DraIII CACNNNGTG 1 cut(s) 216
DriI GACNNNNNGTC 1 cut(s) 286
Eam1105I GACNNNNNGTC 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 267
EcoRII CCWGG 2 cut(s) 14, 130
EcoT22I ATGCAT 1 cut(s) 10
FaeI CATG 1 cut(s) 262
FaiI YATR 6 cut(s) 77, 79, 117, 180, 260, 276
FaqI GGGAC 1 cut(s) 437
FatI CATG 1 cut(s) 258
FblI GTMKAC 3 cut(s) 103, 279, 343
FokI GGATG 2 cut(s) 17, 374
FspBI CTAG 4 cut(s) 99, 311, 339, 483
GlaI GCGC 2 cut(s) 333, 459
HaeII RGCGCY 1 cut(s) 335
HhaI GCGC 2 cut(s) 334, 460
Hin1II CATG 1 cut(s) 262
Hin6I GCGC 2 cut(s) 332, 458
HinP1I GCGC 2 cut(s) 332, 458
HincII GTYRAC 2 cut(s) 104, 280
HindII GTYRAC 2 cut(s) 104, 280
HinfI GANTC 2 cut(s) 191, 358
Hpy166II GTNNAC 4 cut(s) 104, 280, 298, 344
Hpy188I TCNGA 2 cut(s) 28, 363
Hpy188III TCNNGA 2 cut(s) 269, 428
Hpy8I GTNNAC 4 cut(s) 104, 280, 298, 344
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 108
HpyCH4IV ACGT 4 cut(s) 126, 227, 384, 450
HpyCH4V TGCA 4 cut(s) 8, 198, 352, 395
HpySE526I ACGT 4 cut(s) 126, 227, 384, 450
Hsp92II CATG 1 cut(s) 262
HspAI GCGC 2 cut(s) 332, 458
Kzo9I GATC 1 cut(s) 95
LpnPI CCDG 8 cut(s) 28, 117, 144, 172, 214, 251, 268, 468
MaeI CTAG 4 cut(s) 99, 311, 339, 483
MaeII ACGT 4 cut(s) 126, 227, 384, 450
MaeIII GTNAC 2 cut(s) 223, 262
MalI GATC 1 cut(s) 97
MboI GATC 1 cut(s) 95
MboII GAAGA 1 cut(s) 386
MluCI AATT 1 cut(s) 420
MlyI GAGTC 1 cut(s) 352
MnlI CCTC 5 cut(s) 83, 411, 414, 435, 471
Mph1103I ATGCAT 1 cut(s) 10
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 2 cut(s) 203, 414
MspCI CTTAAG 1 cut(s) 140
MspR9I CCNGG 2 cut(s) 16, 132
MvaI CCWGG 2 cut(s) 16, 132
MvnI CGCG 1 cut(s) 51
NdeII GATC 1 cut(s) 95
NlaIII CATG 1 cut(s) 262
NsiI ATGCAT 1 cut(s) 10
PaeR7I CTCGAG 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 100
PfeI GAWTC 1 cut(s) 191
PflFI GACNNNGTC 1 cut(s) 275
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PsiI TTATAA 1 cut(s) 180
Psp1406I AACGTT 1 cut(s) 227
Psp6I CCWGG 2 cut(s) 14, 130
PspGI CCWGG 2 cut(s) 14, 130
PsyI GACNNNGTC 1 cut(s) 275
RsaI GTAC 2 cut(s) 257, 299
RsaNI GTAC 2 cut(s) 256, 298
RseI CAYNNNNRTG 2 cut(s) 203, 414
SalI GTCGAC 2 cut(s) 102, 278
SaqAI TTAA 1 cut(s) 141
Sau3AI GATC 1 cut(s) 95
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 2 cut(s) 16, 132
SetI ASST 6 cut(s) 75, 129, 230, 387, 403, 453
Sfr274I CTCGAG 1 cut(s) 267
SlaI CTCGAG 1 cut(s) 267
SmiMI CAYNNNNRTG 2 cut(s) 203, 414
SmlI CTYRAG 2 cut(s) 140, 267
SmoI CTYRAG 2 cut(s) 140, 267
SpeI ACTAGT 2 cut(s) 310, 338
Sse9I AATT 1 cut(s) 420
SsiI CCGC 2 cut(s) 49, 221
SspMI CTAG 4 cut(s) 99, 311, 339, 483
StyD4I CCNGG 2 cut(s) 14, 130
TaaI ACNGT 1 cut(s) 108
TaiI ACGT 4 cut(s) 129, 230, 387, 453
TaqI TCGA 4 cut(s) 94, 103, 268, 279
TasI AATT 1 cut(s) 420
TatI WGTACW 2 cut(s) 255, 297
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 354
TspDTI ATGAA 1 cut(s) 221
TspGWI ACGGA 2 cut(s) 266, 380
TspRI CASTG 1 cut(s) 354
Tth111I GACNNNGTC 1 cut(s) 275
Vha464I CTTAAG 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XhoI CTCGAG 1 cut(s) 267
XmiI GTMKAC 3 cut(s) 103, 279, 343
XspI CTAG 4 cut(s) 99, 311, 339, 483
Zsp2I ATGCAT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.