pycom16g23400

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000179
Physical Location & Seq
Reverse (-)
24321555 .. 24322593
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g23400.3

Sequence Viewer

Length: 435 bp
ATGGATCCGCTTCTGGTATTGGGAGGACACAAGGTACAAGAAGTCCTCGAAGAGAAGAAGTTGCAACAAACCACTAAGCCAAAGGGAGACTCATATCCATCTGGTGCCATTGGTTCAGCTAGGCGCCGTTCCCCTGCCGAGTTGAGAGCGTTTGAGGACCTTGGCATAGCATCAGAGCATGTGGAAGAATCTTACCTAGCTGCTTTCTTAGCTTGTTGGCTTTGTAAGTTTGTTTTTCCAATCGGCGACGTCAACTTTGTTCGTCCTGGGGTTTTCAAAGTTGCTAGCAAGATGGCTGCAGGTGAATCTTTCAGTCTTGCTATCCCGGTTTTGGCCAATATTTATAATGGCTTGAGTGTTGTTTCGAACTCAGCAAACACTGAAGATCTTCAAGAGAGGGTGTTCTGTGGTTCCTACACAACTGATATCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

145

Amino Acids

15.68

Weight (kDa)

5.38

Isoelectric Point (pI)

59.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
AarI CACCTGC 1 cut(s) 290
AatII GACGTC 1 cut(s) 252
Acc36I ACCTGC 1 cut(s) 290
AccB1I GGYRCC 2 cut(s) 104, 123
AciI CCGC 1 cut(s) 8
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 402
AcyI GRCGYC 2 cut(s) 124, 249
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 331
AgsI TTSAA 2 cut(s) 277, 392
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 3 cut(s) 119, 200, 212
AluI AGCT 3 cut(s) 119, 200, 212
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 333
ApeKI GCWGC 2 cut(s) 200, 296
ArsI GACNNNNNNTTYG 2 cut(s) 239, 271
Asp700I GAANNNNTTC 1 cut(s) 387
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 157
AsuC2I CCSGG 1 cut(s) 326
AsuHPI GGTGA 1 cut(s) 314
AsuII TTCGAA 1 cut(s) 365
AsuNHI GCTAGC 1 cut(s) 284
AvaII GGWCC 1 cut(s) 157
BalI TGGCCA 1 cut(s) 335
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 2 cut(s) 104, 123
BbvI GCAGC 2 cut(s) 187, 283
BccI CCATC 2 cut(s) 106, 286
BceAI ACGGC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 267
BcnI CCSGG 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 3 cut(s) 120, 197, 285
BfmI CTRYAG 1 cut(s) 297
BfoI RGCGCY 1 cut(s) 127
BfuAI ACCTGC 1 cut(s) 290
BglII AGATCT 1 cut(s) 385
BisI GCNGC 2 cut(s) 201, 297
BlsI GCNGC 2 cut(s) 202, 298
Bme1390I CCNGG 2 cut(s) 267, 326
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 4 cut(s) 6, 106, 125, 412
BmrFI CCNGG 2 cut(s) 267, 326
BmsI GCATC 1 cut(s) 179
BmtI GCTAGC 1 cut(s) 288
Bpu14I TTCGAA 1 cut(s) 365
BpuEI CTTGAG 1 cut(s) 373
BpuMI CCSGG 1 cut(s) 326
BsaHI GRCGYC 2 cut(s) 124, 249
BsaJI CCNNGG 2 cut(s) 160, 266
Bsc4I CCNNNNNNNGG 1 cut(s) 331
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 2 cut(s) 160, 266
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMII CTCAG 1 cut(s) 384
BseXI GCAGC 2 cut(s) 187, 283
BshFI GGCC 1 cut(s) 335
BshNI GGYRCC 2 cut(s) 104, 123
BsiSI CCGG 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 331
BsmAI GTCTC 1 cut(s) 81
BsnI GGCC 1 cut(s) 335
Bsp119I TTCGAA 1 cut(s) 365
Bsp143I GATC 2 cut(s) 4, 385
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 335
BspCNI CTCAG 1 cut(s) 383
BspLI GGNNCC 4 cut(s) 6, 106, 125, 412
BspMAI CTGCAG 1 cut(s) 301
BspMI ACCTGC 1 cut(s) 290
BspOI GCTAGC 1 cut(s) 288
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 365
BspT107I GGYRCC 2 cut(s) 104, 123
BssECI CCNNGG 2 cut(s) 160, 266
BssMI GATC 2 cut(s) 4, 385
BssNI GRCGYC 2 cut(s) 124, 249
BssT1I CCWWGG 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 267
Bst6I CTCTTC 1 cut(s) 45
BstACI GRCGYC 2 cut(s) 124, 249
BstBI TTCGAA 1 cut(s) 365
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 3 cut(s) 75, 208, 370
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 2 cut(s) 7, 388
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 2 cut(s) 4, 385
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 267
BstNSI RCATGY 1 cut(s) 182
BstSCI CCNGG 2 cut(s) 265, 324
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 187, 283
BstX2I RGATCY 2 cut(s) 4, 385
BstYI RGATCY 2 cut(s) 4, 385
BsuRI GGCC 1 cut(s) 335
BtsIMutI CAGTG 1 cut(s) 378
BveI ACCTGC 1 cut(s) 290
Cac8I GCNNGC 1 cut(s) 286
CfoI GCGC 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 157
Csp6I GTAC 1 cut(s) 35
CviAII CATG 1 cut(s) 179
CviJI RGCY 8 cut(s) 79, 119, 200, 212, 220, 296, 335, 351
CviKI_1 RGCY 8 cut(s) 79, 119, 200, 212, 220, 296, 335, 351
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 3 cut(s) 75, 208, 370
DinI GGCGCC 1 cut(s) 125
DpnI GATC 2 cut(s) 6, 387
DpnII GATC 2 cut(s) 4, 385
EaeI YGGCCR 1 cut(s) 333
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 160
Eco32I GATATC 1 cut(s) 427
Eco47I GGWCC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 402
EcoO109I RGGNCCY 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 265
EcoRV GATATC 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 160
EgeI GGCGCC 1 cut(s) 125
EheI GGCGCC 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 1 cut(s) 182
FaiI YATR 4 cut(s) 94, 167, 180, 345
FatI CATG 1 cut(s) 178
Fnu4HI GCNGC 2 cut(s) 201, 297
Fsp4HI GCNGC 2 cut(s) 201, 297
FspBI CTAG 3 cut(s) 120, 197, 285
GlaI GCGC 1 cut(s) 125
GluI GCNGC 2 cut(s) 201, 297
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 1 cut(s) 335
HapII CCGG 1 cut(s) 326
HhaI GCGC 1 cut(s) 126
Hin1I GRCGYC 2 cut(s) 124, 249
Hin1II CATG 1 cut(s) 182
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 3 cut(s) 89, 188, 305
HpaII CCGG 1 cut(s) 326
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 1 cut(s) 392
Hpy8I GTNNAC 1 cut(s) 253
Hpy99I CGWCG 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 2 cut(s) 64, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 3 cut(s) 75, 208, 370
HpySE526I ACGT 1 cut(s) 249
Hsp92I GRCGYC 2 cut(s) 124, 249
Hsp92II CATG 1 cut(s) 182
HspAI GCGC 1 cut(s) 124
KasI GGCGCC 1 cut(s) 123
Kzo9I GATC 2 cut(s) 4, 385
LpnPI CCDG 6 cut(s) 87, 147, 252, 279, 285, 339
Lsp1109I GCAGC 2 cut(s) 187, 283
LweI GCATC 1 cut(s) 179
MaeI CTAG 3 cut(s) 120, 197, 285
MaeII ACGT 1 cut(s) 249
MalI GATC 2 cut(s) 6, 387
MboI GATC 2 cut(s) 4, 385
MboII GAAGA 5 cut(s) 62, 67, 197, 380, 395
MflI RGATCY 2 cut(s) 4, 385
MlsI TGGCCA 1 cut(s) 335
MluNI TGGCCA 1 cut(s) 335
Mly113I GGCGCC 1 cut(s) 124
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 4 cut(s) 17, 56, 148, 390
Mox20I TGGCCA 1 cut(s) 335
MroXI GAANNNNTTC 1 cut(s) 387
MscI TGGCCA 1 cut(s) 335
Msp20I TGGCCA 1 cut(s) 335
MspI CCGG 1 cut(s) 326
MspR9I CCNGG 2 cut(s) 267, 326
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 209
NarI GGCGCC 1 cut(s) 124
NciI CCSGG 1 cut(s) 326
NdeII GATC 2 cut(s) 4, 385
NheI GCTAGC 1 cut(s) 284
NlaIII CATG 1 cut(s) 182
NlaIV GGNNCC 4 cut(s) 6, 106, 125, 412
NmeAIII GCCGAG 1 cut(s) 163
NspI RCATGY 1 cut(s) 182
NspV TTCGAA 1 cut(s) 365
PaqCI CACCTGC 1 cut(s) 290
PdmI GAANNNNTTC 1 cut(s) 387
PfeI GAWTC 2 cut(s) 188, 305
PkrI GCNGC 2 cut(s) 202, 298
PleI GAGTC 1 cut(s) 83
PluTI GGCGCC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 83
PpuMI RGGWCCY 1 cut(s) 157
PsiI TTATAA 1 cut(s) 345
Psp5II RGGWCCY 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 4 cut(s) 6, 106, 125, 412
PspPI GGNCC 1 cut(s) 157
PspPPI RGGWCCY 1 cut(s) 157
PstI CTGCAG 1 cut(s) 301
PsuI RGATCY 2 cut(s) 4, 385
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SatI GCNGC 2 cut(s) 201, 297
Sau3AI GATC 2 cut(s) 4, 385
Sau96I GGNCC 1 cut(s) 157
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 2 cut(s) 267, 326
SetI ASST 8 cut(s) 36, 121, 162, 198, 202, 214, 252, 304
SfaNI GCATC 1 cut(s) 179
SfcI CTRYAG 1 cut(s) 297
SfoI GGCGCC 1 cut(s) 125
SfuI TTCGAA 1 cut(s) 365
SinI GGWCC 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 352
SmoI CTYRAG 1 cut(s) 352
SsiI CCGC 1 cut(s) 8
SspDI GGCGCC 1 cut(s) 123
SspI AATATT 1 cut(s) 340
SspMI CTAG 3 cut(s) 120, 197, 285
StyD4I CCNGG 2 cut(s) 265, 324
StyI CCWWGG 1 cut(s) 160
TaiI ACGT 1 cut(s) 252
TaqI TCGA 2 cut(s) 48, 365
TfiI GAWTC 2 cut(s) 188, 305
TscAI CASTG 1 cut(s) 385
TseI GCWGC 2 cut(s) 200, 296
TspRI CASTG 1 cut(s) 385
VpaK11BI GGWCC 1 cut(s) 157
XceI RCATGY 1 cut(s) 182
XmnI GAANNNNTTC 1 cut(s) 387
XspI CTAG 3 cut(s) 120, 197, 285
ZraI GACGTC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.