Rmu_sc0005816.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005816.1
OG0000179
Physical Location & Seq
Forward (+)
19803 .. 20276
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005816.1_g000005.1.cds

Sequence Viewer

Length: 474 bp
ctgatagctgagattagcctttatgggattgatccttcatccgtaaggggcaaagttgagggattgttgactagtgctgacccatacaacttggcacggcttgcttgttcacgcaaagctactccaggcacacgtaatcaacgtctggctgacacagagtcaaaaattgcaaaggtcacttcaattcctcaagctgactctgatcaacgccaatctacactcaagtttttggagaaattaaaggaggaacaactaaaattggagcaaacagtgacttcactagacgagagacttctactacaggagaagaagcttgttgacttagaaaaagagaagactcaaatcaaagagacccctgaggtgaccactgtagagcttgagatgacagaatcattgcgagatatttttggtgtgaagagctgttctccatttgtagtttatgatgattttttcattttcctttattacttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.84

Weight (kDa)

5.07

Isoelectric Point (pI)

32.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 26
AflIII ACRYGT 1 cut(s) 131
AgsI TTSAA 1 cut(s) 183
AhdI GACNNNNNGTC 1 cut(s) 157
AhlI ACTAGT 1 cut(s) 71
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 6 cut(s) 8, 119, 194, 313, 376, 420
AluI AGCT 6 cut(s) 8, 119, 194, 313, 376, 420
Alw26I GTCTC 2 cut(s) 283, 344
AlwI GGATC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 373
AxyI CCTNAGG 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 341
BceAI ACGGC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 126
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 2 cut(s) 283, 344
BcuI ACTAGT 1 cut(s) 71
BfaI CTAG 2 cut(s) 72, 281
BfmI CTRYAG 2 cut(s) 299, 369
Bme1390I CCNGG 1 cut(s) 126
BmeRI GACNNNNNGTC 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 341
BplI GAGNNNNNCTC 2 cut(s) 409, 441
BpmI CTGGAG 1 cut(s) 108
BpuEI CTTGAG 3 cut(s) 174, 206, 398
BsaAI YACGTR 1 cut(s) 134
BsaI GGTCTC 1 cut(s) 344
Bse21I CCTNAGG 1 cut(s) 357
Bse3DI GCAATG 1 cut(s) 392
BseBI CCWGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 38
BseMI GCAATG 1 cut(s) 392
BseMII CTCAG 1 cut(s) 348
BsmAI GTCTC 2 cut(s) 283, 344
Bso31I GGTCTC 1 cut(s) 344
Bsp143I GATC 2 cut(s) 31, 202
BspCNI CTCAG 1 cut(s) 349
BspPI GGATC 1 cut(s) 26
BspQI GCTCTTC 1 cut(s) 410
BspTNI GGTCTC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 392
BssMI GATC 2 cut(s) 31, 202
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 271, 370
Bst6I CTCTTC 1 cut(s) 410
BstAPI GCANNNNNTGC 1 cut(s) 101
BstBAI YACGTR 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 3 cut(s) 9, 322, 357
BstEII GGTNACC 1 cut(s) 361
BstF5I GGATG 1 cut(s) 38
BstKTI GATC 2 cut(s) 34, 205
BstMAI GTCTC 2 cut(s) 283, 344
BstMBI GATC 2 cut(s) 31, 202
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 1 cut(s) 126
BstPI GGTNACC 1 cut(s) 361
BstSCI CCNGG 1 cut(s) 124
BstSFI CTRYAG 2 cut(s) 299, 369
BstV2I GAAGAC 1 cut(s) 341
Bsu36I CCTNAGG 1 cut(s) 357
BtsCI GGATG 1 cut(s) 38
BtsIMutI CAGTG 2 cut(s) 276, 366
Cac8I GCNNGC 1 cut(s) 102
CviJI RGCY 9 cut(s) 8, 18, 100, 119, 149, 194, 313, 376, 420
CviKI_1 RGCY 9 cut(s) 8, 18, 100, 119, 149, 194, 313, 376, 420
DdeI CTNAG 3 cut(s) 9, 322, 357
DpnI GATC 2 cut(s) 33, 204
DpnII GATC 2 cut(s) 31, 202
DriI GACNNNNNGTC 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 410
Eam1105I GACNNNNNGTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 410
Eco31I GGTCTC 1 cut(s) 344
Eco81I CCTNAGG 1 cut(s) 357
Eco91I GGTNACC 1 cut(s) 361
EcoO65I GGTNACC 1 cut(s) 361
EcoRII CCWGG 1 cut(s) 124
FaiI YATR 3 cut(s) 24, 85, 441
FbaI TGATCA 1 cut(s) 202
FokI GGATG 1 cut(s) 25
FspBI CTAG 2 cut(s) 72, 281
GsuI CTGGAG 1 cut(s) 108
HincII GTYRAC 2 cut(s) 69, 319
HindII GTYRAC 2 cut(s) 69, 319
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 4 cut(s) 158, 197, 337, 389
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 3 cut(s) 69, 110, 319
Hpy188I TCNGA 1 cut(s) 202
Hpy8I GTNNAC 3 cut(s) 69, 110, 319
HpyAV CCTTC 1 cut(s) 45
HpyCH4III ACNGT 2 cut(s) 271, 370
HpyCH4IV ACGT 2 cut(s) 133, 142
HpyCH4V TGCA 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 3 cut(s) 9, 322, 357
HpySE526I ACGT 2 cut(s) 133, 142
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 2 cut(s) 31, 202
LguI GCTCTTC 1 cut(s) 410
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 5 cut(s) 111, 131, 138, 287, 369
MaeI CTAG 2 cut(s) 72, 281
MaeII ACGT 2 cut(s) 133, 142
MaeIII GTNAC 3 cut(s) 175, 271, 361
MalI GATC 2 cut(s) 33, 204
MboI GATC 2 cut(s) 31, 202
MboII GAAGA 3 cut(s) 319, 346, 427
MluCI AATT 4 cut(s) 165, 183, 236, 257
MlyI GAGTC 3 cut(s) 167, 191, 331
MnlI CCTC 4 cut(s) 52, 198, 238, 352
MseI TTAA 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 2 cut(s) 31, 202
NmuCI GTSAC 3 cut(s) 175, 271, 361
PciSI GCTCTTC 1 cut(s) 410
PcsI WCGNNNNNNNCGW 1 cut(s) 139
PfeI GAWTC 1 cut(s) 389
PleI GAGTC 3 cut(s) 166, 191, 331
PpsI GAGTC 3 cut(s) 166, 191, 331
Ppu21I YACGTR 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 124
PspEI GGTNACC 1 cut(s) 361
PspGI CCWGG 1 cut(s) 124
SapI GCTCTTC 1 cut(s) 410
SaqAI TTAA 1 cut(s) 239
Sau3AI GATC 2 cut(s) 31, 202
SchI GAGTC 3 cut(s) 167, 191, 331
ScrFI CCNGG 1 cut(s) 126
SfcI CTRYAG 2 cut(s) 299, 369
SmlI CTYRAG 3 cut(s) 189, 221, 377
SmoI CTYRAG 3 cut(s) 189, 221, 377
SpeI ACTAGT 1 cut(s) 71
Sse9I AATT 4 cut(s) 165, 183, 236, 257
SspMI CTAG 2 cut(s) 72, 281
StyD4I CCNGG 1 cut(s) 124
TaaI ACNGT 2 cut(s) 271, 370
TaiI ACGT 2 cut(s) 136, 145
TasI AATT 4 cut(s) 165, 183, 236, 257
TfiI GAWTC 1 cut(s) 389
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TscAI CASTG 2 cut(s) 276, 373
TseFI GTSAC 3 cut(s) 175, 271, 361
Tsp45I GTSAC 3 cut(s) 175, 271, 361
TspDTI ATGAA 2 cut(s) 27, 442
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 2 cut(s) 276, 373
XspI CTAG 2 cut(s) 72, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.