Rmu_sc0008923.1_g000019

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008923.1
OG0000179
Physical Location & Seq
Forward (+)
69630 .. 69983
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008923.1_g000019.1.cds

Sequence Viewer

Length: 354 bp
atgaagcactcctcaaagaccattctttcctgcaagggggaacttgacaagctgatagctgagcttagccattataggattgatccttcatccgtaaggggaaaagttgagggattgttgactagtgctgaccaatacaacctggtacggctttcttgttcacgcaaagctactccaggtacacgtaatcaacgtctggctgacacagagtcagaaattgcaaaggtcacgacaattcgtcaagctgactctgatcatcgccaatctgcactcaagtctttggagaaattaaaggaggagcagcgaaaattggagcaaacaatgactttactagatgagacacttctactatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

117

Amino Acids

13.2

Weight (kDa)

8.95

Isoelectric Point (pI)

33.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 77
AfaI GTAC 2 cut(s) 147, 181
AfiI CCNNNNNNNGG 1 cut(s) 36
AflIII ACRYGT 1 cut(s) 182
AhdI GACNNNNNGTC 2 cut(s) 208, 237
AhlI ACTAGT 1 cut(s) 122
AjnI CCWGG 2 cut(s) 141, 175
AluBI AGCT 5 cut(s) 52, 59, 64, 170, 245
AluI AGCT 5 cut(s) 52, 59, 64, 170, 245
Alw26I GTCTC 1 cut(s) 332
AlwI GGATC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 313
BceAI ACGGC 1 cut(s) 164
BciT130I CCWGG 2 cut(s) 143, 177
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 332
BcuI ACTAGT 1 cut(s) 122
BfaI CTAG 2 cut(s) 123, 332
BfmI CTRYAG 1 cut(s) 350
BisI GCNGC 1 cut(s) 302
BlpI GCTNAGC 2 cut(s) 60, 65
BlsI GCNGC 1 cut(s) 303
Bme1390I CCNGG 2 cut(s) 143, 177
BmeRI GACNNNNNGTC 2 cut(s) 208, 237
BmrFI CCNGG 2 cut(s) 143, 177
BpmI CTGGAG 1 cut(s) 159
Bpu1102I GCTNAGC 2 cut(s) 60, 65
BpuEI CTTGAG 1 cut(s) 257
BsaAI YACGTR 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 36
BseBI CCWGG 2 cut(s) 143, 177
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 1 cut(s) 313
BsgI GTGCAG 1 cut(s) 252
BslI CCNNNNNNNGG 1 cut(s) 36
BsmAI GTCTC 1 cut(s) 332
Bsp143I GATC 2 cut(s) 82, 253
Bsp1720I GCTNAGC 2 cut(s) 60, 65
BspCNI CTCAG 1 cut(s) 52
BspPI GGATC 1 cut(s) 77
BssMI GATC 2 cut(s) 82, 253
Bst2UI CCWGG 2 cut(s) 143, 177
BstBAI YACGTR 1 cut(s) 185
BstDEI CTNAG 2 cut(s) 60, 65
BstF5I GGATG 1 cut(s) 89
BstKTI GATC 2 cut(s) 85, 256
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 2 cut(s) 82, 253
BstNI CCWGG 2 cut(s) 143, 177
BstSCI CCNGG 2 cut(s) 141, 175
BstSFI CTRYAG 1 cut(s) 350
BstV1I GCAGC 1 cut(s) 313
BtgZI GCGATG 1 cut(s) 242
BtsCI GGATG 1 cut(s) 89
CsiI ACCWGGT 1 cut(s) 141
Csp6I GTAC 2 cut(s) 146, 180
CviJI RGCY 8 cut(s) 52, 59, 64, 69, 151, 170, 200, 245
CviKI_1 RGCY 8 cut(s) 52, 59, 64, 69, 151, 170, 200, 245
CviQI GTAC 2 cut(s) 146, 180
DdeI CTNAG 2 cut(s) 60, 65
DpnI GATC 2 cut(s) 84, 255
DpnII GATC 2 cut(s) 82, 253
DriI GACNNNNNGTC 2 cut(s) 208, 237
Eam1105I GACNNNNNGTC 2 cut(s) 208, 237
EcoRII CCWGG 2 cut(s) 141, 175
FaiI YATR 2 cut(s) 75, 352
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 302
FokI GGATG 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 302
FspBI CTAG 2 cut(s) 123, 332
GluI GCNGC 1 cut(s) 302
GsuI CTGGAG 1 cut(s) 159
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HinfI GANTC 2 cut(s) 209, 248
Hpy166II GTNNAC 3 cut(s) 120, 161, 182
Hpy188I TCNGA 2 cut(s) 214, 253
Hpy188III TCNNGA 1 cut(s) 229
Hpy8I GTNNAC 3 cut(s) 120, 161, 182
HpyAV CCTTC 1 cut(s) 96
HpyCH4IV ACGT 2 cut(s) 184, 193
HpyCH4V TGCA 3 cut(s) 33, 221, 269
HpyF3I CTNAG 2 cut(s) 60, 65
HpySE526I ACGT 2 cut(s) 184, 193
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 2 cut(s) 82, 253
LmnI GCTCC 2 cut(s) 298, 313
LpnPI CCDG 6 cut(s) 43, 128, 155, 162, 182, 189
Lsp1109I GCAGC 1 cut(s) 313
MabI ACCWGGT 1 cut(s) 141
MaeI CTAG 2 cut(s) 123, 332
MaeII ACGT 2 cut(s) 184, 193
MaeIII GTNAC 1 cut(s) 226
MalI GATC 2 cut(s) 84, 255
MboI GATC 2 cut(s) 82, 253
MluCI AATT 4 cut(s) 216, 234, 287, 308
MlyI GAGTC 2 cut(s) 218, 242
MnlI CCTC 3 cut(s) 22, 103, 289
MseI TTAA 1 cut(s) 290
MspR9I CCNGG 2 cut(s) 143, 177
MvaI CCWGG 2 cut(s) 143, 177
NdeII GATC 2 cut(s) 82, 253
NmuCI GTSAC 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 190
PkrI GCNGC 1 cut(s) 303
PleI GAGTC 2 cut(s) 217, 242
PpsI GAGTC 2 cut(s) 217, 242
Ppu21I YACGTR 1 cut(s) 185
Psp6I CCWGG 2 cut(s) 141, 175
PspGI CCWGG 2 cut(s) 141, 175
RsaI GTAC 2 cut(s) 147, 181
RsaNI GTAC 2 cut(s) 146, 180
SaqAI TTAA 1 cut(s) 290
SatI GCNGC 1 cut(s) 302
Sau3AI GATC 2 cut(s) 82, 253
SchI GAGTC 2 cut(s) 218, 242
ScrFI CCNGG 2 cut(s) 143, 177
SexAI ACCWGGT 1 cut(s) 141
SfcI CTRYAG 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
SpeI ACTAGT 1 cut(s) 122
Sse9I AATT 4 cut(s) 216, 234, 287, 308
SspMI CTAG 2 cut(s) 123, 332
StyD4I CCNGG 2 cut(s) 141, 175
TaiI ACGT 2 cut(s) 187, 196
TasI AATT 4 cut(s) 216, 234, 287, 308
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 1 cut(s) 301
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 2 cut(s) 17, 78
TspGWI ACGGA 1 cut(s) 82
XspI CTAG 2 cut(s) 123, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.