Rmu_sc0003553.1_g000006

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003553.1
OG0000179
Physical Location & Seq
Reverse (-)
20881 .. 23270
2390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003553.1_g000006.1.cds

Sequence Viewer

Length: 2211 bp
atggccttcttcaagtgcttcaagaaagggacagtcaccatcctcgaggatcaggaggacgctcaaagtgatggaactactctgcaagtgcacccattgttgactaggcctcaagcaatcgatgtccctccttatgacccttcagctcacatcctccaatggactcatgcggtacctcgccagctggctatgtttcgacaaccgagatctggaagagaccaacaaaactcgcatgtactgttgctgaaatcttggcatcatgatcagaacactcctcagaccccattcaagcttctcagcgatcgtgtactcaacggttcagtgaagtggagcaatgcatttcatgcaaacgggggtttctcttacacagaattctactgggaatgggtagaagatatcttaagcaggaatgacaagcttactcgggaggccggtctttatcgagcgatattcgcctcactattcagctatgaccgtgttgcatctgtcatacgagctttctgcgagtactggtgccccgcgacgaatactctccacacatctagcagagaaatgtccatctccctctgggatttggaccaactcagaggtttgcccattgctggacggttttatgatgaggtggttccagctgctaaagagcttactgtagcaagtaaagggagtaaacagagctaccgctatttgtttctcgcctaccataagctttgcaaagaaggccaagggcagaaagtgaagataacttcatggatacgatattggtatagaggagctttgcgctacaagagacctccaaacaaaagcaccaggaacaaaagagatccttcccagaatgtgtttaatccatctggcaggatccatgagatccgaccacgtacttctgcaaacctcgcagtatttgatgacttaggcattgagagtgaagatatagagcccacctatttggctacctttcttgcttgttggttgtgtctgtttgttttacccaaagacgacactggtttgattcgtccgggagtattcaaagttgccagcaaaatgtcacagggtaactgctcggctgcccttccttttcattatatttatgcatggctagcagagtactttggcacccactttcagtctccgcttcccaatgacctaaggccccgtatggttcgcttctctggagaattttcagctaaatattgtggggactcacaggcgctttctttgttcaatgcacgtgataatgtgaggatggatgcattttccagggtattttcggagagcagagtgattatcaaccgcgagaacatctcccatttagacctcatatatctcatcagcctccgatccgggtatctttctctcagacaggataaccgacgagtcattcagccacacagtccacatttgttcagtcgacagtttggttatgtccaagactttcctggcagtcttacgaacaacattcgcaccaatgtattggctttgatttataagcattgggattcttgcaccagaatgaacaccaagtgcgcgataacgttgccgacccaaagtgctatcacggagtacatggttactcaagactatgtcgactggtggtctaaagtgtaccattctacaccagtgaaagcaacgaaagaagcgcctacgagtagaccactacacaagactctgaaagcaaaagaaaataagaacgtcacccgtgcaatacctcctcatcacaaaaatgtgattcctcgtgaagttgaatatagcaccaacgtccctgcgcctcctaataggactttgcttcctagtagtgattgccagactcatctgcccaacactctagatgatgatggggactctttagattctcacattgctttggctcatccacctaagttgaaaagacctgccatcaaagaaagaaggcatagtggaagtagcggtagcaataatagtgaagtgcactttaagcgtcggaaaactgacaccaatcttggccctatttattgtgatcccaatgctgagttcactctgaatactgactttcttggtgacatttcaacttcttcacaaccgatgttgcaacgaaatgagggtgcagagattgatgatcattcactttgggggaacgatgacgcctcttcagacgctatacgtgttccttctgcaggggaacttgaggcttacgctttacccacaaaaggaaaatccaatgcaaagaatgactcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

736

Amino Acids

83.77

Weight (kDa)

8.99

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1482
AbsI CCTCGAGG 1 cut(s) 44
Acc36I ACCTGC 1 cut(s) 1894
Acc65I GGTACC 1 cut(s) 172
AccB1I GGYRCC 3 cut(s) 172, 513, 1109
AccI GTMKAC 3 cut(s) 1405, 1581, 1645
AccII CGCG 3 cut(s) 521, 1290, 1523
AciI CCGC 6 cut(s) 170, 519, 679, 1127, 1288, 1920
AclI AACGTT 1 cut(s) 1529
AclWI GGATC 7 cut(s) 57, 815, 850, 859, 863, 1329, 1985
AcsI RAATTY 2 cut(s) 371, 1172
AcuI CTGAAG 2 cut(s) 126, 2106
AcvI CACGTG 1 cut(s) 1226
AcyI GRCGYC 1 cut(s) 2115
AdeI CACNNNGTG 1 cut(s) 1518
AfaI GTAC 8 cut(s) 174, 237, 309, 509, 877, 1103, 1559, 1601
AfiI CCNNNNNNNGG 4 cut(s) 209, 602, 2147, 2180
AflII CTTAAG 1 cut(s) 400
AflIII ACRYGT 1 cut(s) 2134
AgsI TTSAA 8 cut(s) 13, 22, 289, 1024, 1219, 1739, 1879, 2040
AhdI GACNNNNNGTC 1 cut(s) 1588
AjnI CCWGG 3 cut(s) 806, 1253, 1432
AjuI GAANNNNNNNTTGG 2 cut(s) 1988, 2020
Alw21I GWGCWC 2 cut(s) 93, 1944
Alw26I GTCTC 3 cut(s) 210, 781, 1128
Alw44I GTGCAC 2 cut(s) 89, 1940
AlwI GGATC 7 cut(s) 57, 815, 850, 859, 863, 1329, 1985
Ama87I CYCGRG 2 cut(s) 44, 423
AoxI GGCC 6 cut(s) 3, 107, 429, 718, 1145, 1975
ApaLI GTGCAC 2 cut(s) 89, 1940
ApeKI GCWGC 2 cut(s) 632, 1061
ApoI RAATTY 2 cut(s) 371, 1172
Asp718I GGTACC 1 cut(s) 172
AspLEI GCGC 5 cut(s) 780, 1207, 1523, 1636, 1762
AspS9I GGNCC 3 cut(s) 577, 1146, 1976
AsuC2I CCSGG 2 cut(s) 1014, 1339
AsuHPI GGTGA 3 cut(s) 28, 1681, 2042
AsuNHI GCTAGC 1 cut(s) 1093
AvaI CYCGRG 2 cut(s) 44, 423
AvaII GGWCC 1 cut(s) 577
AxyI CCTNAGG 1 cut(s) 1142
BaeGI GKGCMC 3 cut(s) 93, 518, 1944
BamHI GGATCC 1 cut(s) 855
BanI GGYRCC 3 cut(s) 172, 513, 1109
BanII GRGCYC 1 cut(s) 936
BauI CACGAG 1 cut(s) 1728
BbrPI CACGTG 1 cut(s) 1226
Bbv12I GWGCWC 2 cut(s) 93, 1944
BbvI GCAGC 2 cut(s) 619, 1048
BccI CCATC 7 cut(s) 47, 65, 566, 853, 1234, 1823, 1898
BcgI CGANNNNNNTGC 4 cut(s) 483, 517, 1513, 1547
BciT130I CCWGG 3 cut(s) 808, 1255, 1434
BciVI GTATCC 1 cut(s) 744
BclI TGATCA 2 cut(s) 262, 2089
BcnI CCSGG 2 cut(s) 1014, 1339
BcoDI GTCTC 3 cut(s) 210, 781, 1128
BfaI CTAG 5 cut(s) 105, 543, 1094, 1785, 1820
BfmI CTRYAG 2 cut(s) 648, 2145
BfoI RGCGCY 2 cut(s) 1208, 1637
BfrI CTTAAG 1 cut(s) 400
BfuAI ACCTGC 1 cut(s) 1894
BfuI GTATCC 1 cut(s) 744
BglII AGATCT 1 cut(s) 206
BisI GCNGC 2 cut(s) 633, 1062
BlsI GCNGC 2 cut(s) 634, 1063
BmcAI AGTACT 2 cut(s) 509, 1103
Bme1390I CCNGG 5 cut(s) 808, 1014, 1255, 1339, 1434
Bme18I GGWCC 1 cut(s) 577
BmeRI GACNNNNNGTC 1 cut(s) 1588
BmeT110I CYCGRG 2 cut(s) 44, 423
BmgT120I GGNCC 3 cut(s) 577, 1146, 1976
BmiI GGNNCC 6 cut(s) 174, 515, 627, 857, 1111, 1148
BmrFI CCNGG 5 cut(s) 808, 1014, 1255, 1339, 1434
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 3 cut(s) 265, 491, 1234
BmtI GCTAGC 1 cut(s) 1097
BmuI ACTGGG 1 cut(s) 388
BplI GAGNNNNNCTC 2 cut(s) 1283, 1315
BpmI CTGGAG 1 cut(s) 1188
BpuEI CTTGAG 3 cut(s) 96, 1554, 2177
BpuMI CCSGG 2 cut(s) 1014, 1339
Bsa29I ATCGAT 1 cut(s) 120
BsaAI YACGTR 3 cut(s) 875, 1226, 2135
BsaHI GRCGYC 1 cut(s) 2115
BsaI GGTCTC 2 cut(s) 210, 781
BsaJI CCNNGG 2 cut(s) 721, 1254
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 602, 2147, 2180
Bse118I RCCGGY 1 cut(s) 431
Bse1I ACTGG 5 cut(s) 383, 515, 1003, 1589, 1613
Bse21I CCTNAGG 1 cut(s) 1142
Bse3DI GCAATG 3 cut(s) 340, 597, 1851
BseBI CCWGG 3 cut(s) 808, 1255, 1434
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 721, 1254
BseGI GGATG 5 cut(s) 39, 150, 1245, 1249, 1864
BseLI CCNNNNNNNGG 4 cut(s) 209, 602, 2147, 2180
BseMI GCAATG 3 cut(s) 340, 597, 1851
BseMII CTCAG 5 cut(s) 290, 310, 598, 1366, 1992
BseNI ACTGG 5 cut(s) 383, 515, 1003, 1589, 1613
BseRI GAGGAG 3 cut(s) 264, 783, 1695
BseSI GKGCMC 3 cut(s) 93, 518, 1944
BseXI GCAGC 2 cut(s) 619, 1048
BsgI GTGCAG 1 cut(s) 2097
Bsh1236I CGCG 3 cut(s) 521, 1290, 1523
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 6 cut(s) 5, 109, 431, 720, 1147, 1977
BshNI GGYRCC 3 cut(s) 172, 513, 1109
BshVI ATCGAT 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 304
BsiHKAI GWGCWC 2 cut(s) 93, 1944
BsiHKCI CYCGRG 2 cut(s) 44, 423
BsiSI CCGG 3 cut(s) 432, 1013, 1338
BslFI GGGAC 5 cut(s) 43, 110, 1208, 1739, 1847
BslI CCNNNNNNNGG 4 cut(s) 209, 602, 2147, 2180
BsmAI GTCTC 3 cut(s) 210, 781, 1128
BsmFI GGGAC 5 cut(s) 43, 110, 1208, 1739, 1847
BsnI GGCC 6 cut(s) 5, 109, 431, 720, 1147, 1977
Bso31I GGTCTC 2 cut(s) 210, 781
BsoBI CYCGRG 2 cut(s) 44, 423
Bsp1286I GDGCHC 4 cut(s) 93, 518, 936, 1944
BspACI CCGC 6 cut(s) 170, 519, 679, 1127, 1288, 1920
BspANI GGCC 6 cut(s) 5, 109, 431, 720, 1147, 1977
BspCNI CTCAG 5 cut(s) 289, 309, 597, 1365, 1993
BspDI ATCGAT 1 cut(s) 120
BspFNI CGCG 3 cut(s) 521, 1290, 1523
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 6 cut(s) 174, 515, 627, 857, 1111, 1148
BspMAI CTGCAG 1 cut(s) 2149
BspMI ACCTGC 1 cut(s) 1894
BspOI GCTAGC 1 cut(s) 1097
BspPI GGATC 7 cut(s) 57, 815, 850, 859, 863, 1329, 1985
BspT107I GGYRCC 3 cut(s) 172, 513, 1109
BspTI CTTAAG 1 cut(s) 400
BspTNI GGTCTC 2 cut(s) 210, 781
BsrDI GCAATG 3 cut(s) 340, 597, 1851
BsrFI RCCGGY 1 cut(s) 431
BsrI ACTGG 5 cut(s) 383, 515, 1003, 1589, 1613
BssAI RCCGGY 1 cut(s) 431
BssECI CCNNGG 2 cut(s) 721, 1254
BssNI GRCGYC 1 cut(s) 2115
BssSI CACGAG 1 cut(s) 1728
BssT1I CCWWGG 1 cut(s) 721
Bst2BI CACGAG 1 cut(s) 1728
Bst2UI CCWGG 3 cut(s) 808, 1255, 1434
Bst4CI ACNGT 8 cut(s) 34, 240, 317, 476, 609, 649, 1388, 1410
Bst6I CTCTTC 2 cut(s) 208, 2125
BstACI GRCGYC 1 cut(s) 2115
BstAFI CTTAAG 1 cut(s) 400
BstAPI GCANNNNNTGC 1 cut(s) 344
BstBAI YACGTR 3 cut(s) 875, 1226, 2135
BstC8I GCNNGC 4 cut(s) 182, 186, 1033, 1095
BstDEI CTNAG 8 cut(s) 276, 296, 584, 907, 1142, 1352, 1872, 2001
BstENI CCTNNNNNAGG 1 cut(s) 2145
BstF5I GGATG 5 cut(s) 39, 150, 1245, 1249, 1864
BstFNI CGCG 3 cut(s) 521, 1290, 1523
BstH2I RGCGCY 2 cut(s) 1208, 1637
BstHHI GCGC 5 cut(s) 780, 1207, 1523, 1636, 1762
BstMAI GTCTC 3 cut(s) 210, 781, 1128
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 6 cut(s) 344, 452, 717, 890, 1094, 1948
BstNI CCWGG 3 cut(s) 808, 1255, 1434
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 5 cut(s) 806, 1012, 1253, 1337, 1432
BstSFI CTRYAG 2 cut(s) 648, 2145
BstSLI GKGCMC 3 cut(s) 93, 518, 1944
BstUI CGCG 3 cut(s) 521, 1290, 1523
BstV1I GCAGC 2 cut(s) 619, 1048
BstX2I RGATCY 4 cut(s) 206, 820, 855, 864
BstXI CCANNNNNNTGG 2 cut(s) 943, 1468
BstYI RGATCY 4 cut(s) 206, 820, 855, 864
Bsu15I ATCGAT 1 cut(s) 120
Bsu36I CCTNAGG 1 cut(s) 1142
BsuI GTATCC 1 cut(s) 744
BsuRI GGCC 6 cut(s) 5, 109, 431, 720, 1147, 1977
BsuTUI ATCGAT 1 cut(s) 120
BtsCI GGATG 5 cut(s) 39, 150, 1245, 1249, 1864
BtsIMutI CAGTG 3 cut(s) 327, 996, 1620
BveI ACCTGC 1 cut(s) 1894
Cac8I GCNNGC 4 cut(s) 182, 186, 1033, 1095
CciI TCATGA 1 cut(s) 259
CfoI GCGC 5 cut(s) 780, 1207, 1523, 1636, 1762
Cfr10I RCCGGY 1 cut(s) 431
Cfr13I GGNCC 3 cut(s) 577, 1146, 1976
ClaI ATCGAT 1 cut(s) 120
CseI GACGC 4 cut(s) 68, 1940, 2123, 2135
Csp6I GTAC 8 cut(s) 173, 236, 308, 508, 876, 1102, 1558, 1600
CspCI CAANNNNNGTGG 2 cut(s) 1857, 1892
CviAII CATG 8 cut(s) 167, 233, 260, 344, 747, 860, 1089, 1561
CviQI GTAC 8 cut(s) 173, 236, 308, 508, 876, 1102, 1558, 1600
DdeI CTNAG 8 cut(s) 276, 296, 584, 907, 1142, 1352, 1872, 2001
DraIII CACNNNGTG 1 cut(s) 1518
DriI GACNNNNNGTC 1 cut(s) 1588
Eam1104I CTCTTC 2 cut(s) 208, 2125
Eam1105I GACNNNNNGTC 1 cut(s) 1588
EarI CTCTTC 2 cut(s) 208, 2125
Eco130I CCWWGG 1 cut(s) 721
Eco147I AGGCCT 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 936
Eco31I GGTCTC 2 cut(s) 210, 781
Eco32I GATATC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 577
Eco57I CTGAAG 2 cut(s) 126, 2106
Eco72I CACGTG 1 cut(s) 1226
Eco81I CCTNAGG 1 cut(s) 1142
Eco88I CYCGRG 2 cut(s) 44, 423
EcoNI CCTNNNNNAGG 1 cut(s) 2145
EcoO109I RGGNCCY 1 cut(s) 1146
EcoRI GAATTC 1 cut(s) 371
EcoRII CCWGG 3 cut(s) 806, 1253, 1432
EcoRV GATATC 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 721
EcoT22I ATGCAT 3 cut(s) 340, 1090, 1249
EcoT38I GRGCYC 1 cut(s) 936
ErhI CCWWGG 1 cut(s) 721
FaeI CATG 8 cut(s) 170, 236, 263, 347, 750, 863, 1092, 1564
FalI AAGNNNNNCTT 2 cut(s) 808, 840
FaqI GGGAC 5 cut(s) 43, 110, 1208, 1739, 1847
FatI CATG 8 cut(s) 166, 232, 259, 343, 746, 859, 1088, 1560
FauI CCCGC 1 cut(s) 526
FbaI TGATCA 2 cut(s) 262, 2089
FblI GTMKAC 3 cut(s) 1405, 1581, 1645
Fnu4HI GCNGC 2 cut(s) 633, 1062
FokI GGATG 5 cut(s) 26, 137, 1252, 1256, 1851
FriOI GRGCYC 1 cut(s) 936
Fsp4HI GCNGC 2 cut(s) 633, 1062
FspBI CTAG 5 cut(s) 105, 543, 1094, 1785, 1820
GlaI GCGC 5 cut(s) 779, 1206, 1522, 1635, 1761
GluI GCNGC 2 cut(s) 633, 1062
GsuI CTGGAG 1 cut(s) 1188
HaeII RGCGCY 2 cut(s) 1208, 1637
HaeIII GGCC 6 cut(s) 5, 109, 431, 720, 1147, 1977
HapII CCGG 3 cut(s) 432, 1013, 1338
HgaI GACGC 4 cut(s) 68, 1940, 2123, 2135
HhaI GCGC 5 cut(s) 780, 1207, 1523, 1636, 1762
Hin1I GRCGYC 1 cut(s) 2115
Hin1II CATG 8 cut(s) 170, 236, 263, 347, 750, 863, 1092, 1564
Hin6I GCGC 5 cut(s) 778, 1205, 1521, 1634, 1760
HinP1I GCGC 5 cut(s) 778, 1205, 1521, 1634, 1760
HincII GTYRAC 3 cut(s) 102, 1406, 1582
HindII GTYRAC 3 cut(s) 102, 1406, 1582
HindIII AAGCTT 3 cut(s) 290, 416, 704
HpaII CCGG 3 cut(s) 432, 1013, 1338
HphI GGTGA 3 cut(s) 28, 1681, 2042
Hpy188III TCNNGA 9 cut(s) 22, 53, 210, 260, 425, 1167, 1571, 1730, 1820
Hpy99I CGWCG 3 cut(s) 526, 1371, 1956
HpyAV CCTTC 7 cut(s) 16, 150, 710, 834, 1076, 1896, 2151
HpyCH4III ACNGT 8 cut(s) 34, 240, 317, 476, 609, 649, 1388, 1410
HpyCH4IV ACGT 6 cut(s) 874, 1225, 1529, 1686, 1752, 2134
HpyF10VI GCNNNNNNNGC 6 cut(s) 344, 452, 717, 890, 1094, 1948
HpyF3I CTNAG 8 cut(s) 276, 296, 584, 907, 1142, 1352, 1872, 2001
HpySE526I ACGT 6 cut(s) 874, 1225, 1529, 1686, 1752, 2134
Hsp92I GRCGYC 1 cut(s) 2115
Hsp92II CATG 8 cut(s) 170, 236, 263, 347, 750, 863, 1092, 1564
HspAI GCGC 5 cut(s) 778, 1205, 1521, 1634, 1760
KpnI GGTACC 1 cut(s) 176
Ksp22I TGATCA 2 cut(s) 262, 2089
LmnI GCTCC 2 cut(s) 330, 770
Lsp1109I GCAGC 2 cut(s) 619, 1048
LweI GCATC 3 cut(s) 265, 491, 1234
MaeI CTAG 5 cut(s) 105, 543, 1094, 1785, 1820
MaeII ACGT 6 cut(s) 874, 1225, 1529, 1686, 1752, 2134
MaeIII GTNAC 6 cut(s) 34, 1041, 1049, 1564, 1687, 2030
MboII GAAGA 6 cut(s) 225, 404, 748, 935, 2037, 2112
MflI RGATCY 4 cut(s) 206, 820, 855, 864
MhlI GDGCHC 4 cut(s) 93, 518, 936, 1944
MluCI AATT 2 cut(s) 371, 1172
MlyI GAGTC 7 cut(s) 157, 1190, 1380, 1654, 1795, 1829, 2198
MmeI TCCRAC 2 cut(s) 892, 1934
Mph1103I ATGCAT 3 cut(s) 340, 1090, 1249
MseI TTAA 3 cut(s) 401, 840, 1947
MslI CAYNNNNRTG 2 cut(s) 1505, 1716
MspA1I CMGCKG 2 cut(s) 184, 632
MspCI CTTAAG 1 cut(s) 400
MspI CCGG 3 cut(s) 432, 1013, 1338
MspR9I CCNGG 5 cut(s) 808, 1014, 1255, 1339, 1434
MvaI CCWGG 3 cut(s) 808, 1255, 1434
MvnI CGCG 3 cut(s) 521, 1290, 1523
MwoI GCNNNNNNNGC 6 cut(s) 344, 452, 717, 890, 1094, 1948
NciI CCSGG 2 cut(s) 1014, 1339
NheI GCTAGC 1 cut(s) 1093
NlaIII CATG 8 cut(s) 170, 236, 263, 347, 750, 863, 1092, 1564
NlaIV GGNNCC 6 cut(s) 174, 515, 627, 857, 1111, 1148
NmeAIII GCCGAG 1 cut(s) 1037
NmuCI GTSAC 4 cut(s) 34, 1041, 1687, 2030
NsiI ATGCAT 3 cut(s) 340, 1090, 1249
NspI RCATGY 1 cut(s) 236
PaeR7I CTCGAG 1 cut(s) 44
PagI TCATGA 1 cut(s) 259
PceI AGGCCT 1 cut(s) 109
PfeI GAWTC 4 cut(s) 1006, 1493, 1723, 1844
PflFI GACNNNGTC 1 cut(s) 1577
PfoI TCCNGGA 1 cut(s) 1012
PkrI GCNGC 2 cut(s) 634, 1063
Ple19I CGATCG 1 cut(s) 304
PleI GAGTC 7 cut(s) 157, 1190, 1379, 1654, 1795, 1829, 2198
PmaCI CACGTG 1 cut(s) 1226
PmlI CACGTG 1 cut(s) 1226
PpsI GAGTC 7 cut(s) 157, 1190, 1379, 1654, 1795, 1829, 2198
Ppu21I YACGTR 3 cut(s) 875, 1226, 2135
PsiI TTATAA 1 cut(s) 1482
Psp1406I AACGTT 1 cut(s) 1529
Psp6I CCWGG 3 cut(s) 806, 1253, 1432
PspCI CACGTG 1 cut(s) 1226
PspGI CCWGG 3 cut(s) 806, 1253, 1432
PspN4I GGNNCC 6 cut(s) 174, 515, 627, 857, 1111, 1148
PspPI GGNCC 3 cut(s) 577, 1146, 1976
PspXI VCTCGAGB 1 cut(s) 44
PstI CTGCAG 1 cut(s) 2149
PsuI RGATCY 4 cut(s) 206, 820, 855, 864
PsyI GACNNNGTC 1 cut(s) 1577
PvuI CGATCG 1 cut(s) 304
PvuII CAGCTG 2 cut(s) 184, 632
RsaI GTAC 8 cut(s) 174, 237, 309, 509, 877, 1103, 1559, 1601
RsaNI GTAC 8 cut(s) 173, 236, 308, 508, 876, 1102, 1558, 1600
RseI CAYNNNNRTG 2 cut(s) 1505, 1716
SalI GTCGAC 2 cut(s) 1404, 1580
SaqAI TTAA 3 cut(s) 401, 840, 1947
SatI GCNGC 2 cut(s) 633, 1062
Sau96I GGNCC 3 cut(s) 577, 1146, 1976
ScaI AGTACT 2 cut(s) 509, 1103
SchI GAGTC 7 cut(s) 157, 1190, 1380, 1654, 1795, 1829, 2198
ScrFI CCNGG 5 cut(s) 808, 1014, 1255, 1339, 1434
SduI GDGCHC 4 cut(s) 93, 518, 936, 1944
SfaNI GCATC 3 cut(s) 265, 491, 1234
SfcI CTRYAG 2 cut(s) 648, 2145
Sfr274I CTCGAG 1 cut(s) 44
SinI GGWCC 1 cut(s) 577
SlaI CTCGAG 1 cut(s) 44
SmiMI CAYNNNNRTG 2 cut(s) 1505, 1716
SmlI CTYRAG 5 cut(s) 44, 111, 400, 1569, 2156
SmoI CTYRAG 5 cut(s) 44, 111, 400, 1569, 2156
Sse9I AATT 2 cut(s) 371, 1172
SseBI AGGCCT 1 cut(s) 109
SsiI CCGC 6 cut(s) 170, 519, 679, 1127, 1288, 1920
SspI AATATT 1 cut(s) 1187
SspMI CTAG 5 cut(s) 105, 543, 1094, 1785, 1820
StuI AGGCCT 1 cut(s) 109
StyD4I CCNGG 5 cut(s) 806, 1012, 1253, 1337, 1432
StyI CCWWGG 1 cut(s) 721
TaaI ACNGT 8 cut(s) 34, 240, 317, 476, 609, 649, 1388, 1410
TaiI ACGT 6 cut(s) 877, 1228, 1532, 1689, 1755, 2137
TaqI TCGA 6 cut(s) 45, 120, 196, 442, 1405, 1581
TasI AATT 2 cut(s) 371, 1172
TatI WGTACW 5 cut(s) 235, 307, 507, 1101, 1557
TfiI GAWTC 4 cut(s) 1006, 1493, 1723, 1844
Tru1I TTAA 3 cut(s) 401, 840, 1947
Tru9I TTAA 3 cut(s) 401, 840, 1947
TscAI CASTG 3 cut(s) 327, 1003, 1620
TseFI GTSAC 4 cut(s) 34, 1041, 1687, 2030
TseI GCWGC 2 cut(s) 632, 1061
Tsp45I GTSAC 4 cut(s) 34, 1041, 1687, 2030
TspDTI ATGAA 4 cut(s) 332, 735, 1064, 1523
TspGWI ACGGA 1 cut(s) 1568
TspRI CASTG 3 cut(s) 327, 1003, 1620
Tth111I GACNNNGTC 1 cut(s) 1577
Vha464I CTTAAG 1 cut(s) 400
VneI GTGCAC 2 cut(s) 89, 1940
VpaK11BI GGWCC 1 cut(s) 577
XagI CCTNNNNNAGG 1 cut(s) 2145
XapI RAATTY 2 cut(s) 371, 1172
XbaI TCTAGA 1 cut(s) 1819
XceI RCATGY 1 cut(s) 236
XcmI CCANNNNNNNNNTGG 1 cut(s) 1430
XhoI CTCGAG 1 cut(s) 44
XmiI GTMKAC 3 cut(s) 1405, 1581, 1645
XspI CTAG 5 cut(s) 105, 543, 1094, 1785, 1820
ZrmI AGTACT 2 cut(s) 509, 1103
Zsp2I ATGCAT 3 cut(s) 340, 1090, 1249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.