Rmu_sc0000173.1_g000035

NatA auxiliary

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000173.1
OG0000179
Physical Location & Seq
Forward (+)
157776 .. 158598
823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000173.1_g000035.1.cds

Sequence Viewer

Length: 726 bp
ctgaaagcggttaggcttcgtgtatttggcggctcacggagagaagaacacggacgtcctaaacgcttggattcctccacatttgtgtgtggtagggtccaccaaaagcggttaggcttcgtgtatttggtggctcacggagagaagaacacggacgtcctaaacgcttggattcctccacatttgtgtgtggatccggaggacgctcaaagtgatggaactactctgcaagtgcacccatcgttgactgggcctcacgcaatcgatgtccctccttatgacccttcagctcacattctccagtggactcatgtagtacctcgccagctggctatgttccgacaaccgagatccggaagagaccaacaaaactcgcatgtactgttgctgaagtcttcgcatcatgatcagaacactcctcagaccccattcaagcttctcagcgatcgtgtacgcaacggttcagtgaagtggagcaatgcatttcgcacaaatggaggcttctcttacacagagttctactgggaatgggtagaagatatcttaagcaggaatggcaagcttaccctggagactggcctctatcgagctatattcgcctcactgttcagctatgaccgtgttgcacctgtcatacgagccttctgcgagtactggtgtcccgcgacgaataccctccacacttctagcggggaaatgtctatctccctctgggatttggactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NARP1 TPR_11 TPR_2

Protein Analysis

241

Amino Acids

27.48

Weight (kDa)

8.71

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 58, 159
AccII CGCG 1 cut(s) 665
AccIII TCCGGA 2 cut(s) 196, 353
AciI CCGC 5 cut(s) 8, 30, 109, 663, 690
AclWI GGATC 3 cut(s) 188, 201, 345
AcuI CTGAAG 2 cut(s) 270, 410
AcyI GRCGYC 2 cut(s) 55, 156
AfaI GTAC 4 cut(s) 318, 381, 453, 653
AfiI CCNNNNNNNGG 1 cut(s) 353
AflII CTTAAG 1 cut(s) 544
AgsI TTSAA 1 cut(s) 433
AjnI CCWGG 1 cut(s) 567
AleI CACNNNNGTG 2 cut(s) 83, 184
AluBI AGCT 6 cut(s) 290, 328, 436, 562, 590, 612
AluI AGCT 6 cut(s) 290, 328, 436, 562, 590, 612
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 2 cut(s) 354, 566
Alw44I GTGCAC 1 cut(s) 233
AlwI GGATC 3 cut(s) 188, 201, 345
Aor13HI TCCGGA 2 cut(s) 196, 353
AoxI GGCC 2 cut(s) 251, 577
ApaLI GTGCAC 1 cut(s) 233
AspS9I GGNCC 2 cut(s) 97, 251
AvaII GGWCC 1 cut(s) 97
BaeGI GKGCMC 1 cut(s) 237
BamHI GGATCC 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 387
Bbv12I GWGCWC 1 cut(s) 237
BccI CCATC 2 cut(s) 209, 247
BcgI CGANNNNNNTGC 2 cut(s) 627, 661
BciT130I CCWGG 1 cut(s) 569
BclI TGATCA 1 cut(s) 406
BcoDI GTCTC 2 cut(s) 354, 566
BfaI CTAG 1 cut(s) 687
BfrI CTTAAG 1 cut(s) 544
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
BmcAI AGTACT 1 cut(s) 653
Bme1390I CCNGG 1 cut(s) 569
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 2 cut(s) 97, 251
BmiI GGNNCC 2 cut(s) 98, 195
BmrFI CCNGG 1 cut(s) 569
BmrI ACTGGG 2 cut(s) 258, 532
BmsI GCATC 1 cut(s) 409
BmuI ACTGGG 2 cut(s) 258, 532
BpiI GAAGAC 1 cut(s) 387
BpmI CTGGAG 2 cut(s) 284, 590
Bsa29I ATCGAT 1 cut(s) 264
BsaHI GRCGYC 2 cut(s) 55, 156
BsaI GGTCTC 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 567
BsaWI WCCGGW 2 cut(s) 196, 353
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse1I ACTGG 5 cut(s) 253, 301, 527, 580, 659
Bse3DI GCAATG 1 cut(s) 484
BseAI TCCGGA 2 cut(s) 196, 353
BseBI CCWGG 1 cut(s) 569
BseCI ATCGAT 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 567
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMI GCAATG 1 cut(s) 484
BseMII CTCAG 2 cut(s) 434, 454
BseNI ACTGG 5 cut(s) 253, 301, 527, 580, 659
BseRI GAGGAG 1 cut(s) 408
BseSI GKGCMC 1 cut(s) 237
Bsh1236I CGCG 1 cut(s) 665
Bsh1285I CGRYCG 1 cut(s) 448
BshFI GGCC 2 cut(s) 253, 579
BshVI ATCGAT 1 cut(s) 264
BsiEI CGRYCG 1 cut(s) 448
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 2 cut(s) 197, 354
BslFI GGGAC 2 cut(s) 254, 645
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 2 cut(s) 354, 566
BsmFI GGGAC 2 cut(s) 254, 645
BsnI GGCC 2 cut(s) 253, 579
Bso31I GGTCTC 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 237
Bsp13I TCCGGA 2 cut(s) 196, 353
Bsp143I GATC 4 cut(s) 193, 350, 406, 445
BspACI CCGC 5 cut(s) 8, 30, 109, 663, 690
BspANI GGCC 2 cut(s) 253, 579
BspCNI CTCAG 2 cut(s) 433, 453
BspDI ATCGAT 1 cut(s) 264
BspEI TCCGGA 2 cut(s) 196, 353
BspFNI CGCG 1 cut(s) 665
BspHI TCATGA 1 cut(s) 403
BspLI GGNNCC 2 cut(s) 98, 195
BspPI GGATC 3 cut(s) 188, 201, 345
BspTI CTTAAG 1 cut(s) 544
BspTNI GGTCTC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 484
BsrI ACTGG 5 cut(s) 253, 301, 527, 580, 659
BssECI CCNNGG 1 cut(s) 567
BssMI GATC 4 cut(s) 193, 350, 406, 445
BssNI GRCGYC 2 cut(s) 55, 156
Bst2UI CCWGG 1 cut(s) 569
Bst4CI ACNGT 4 cut(s) 384, 461, 606, 620
Bst6I CTCTTC 1 cut(s) 352
BstACI GRCGYC 2 cut(s) 55, 156
BstAFI CTTAAG 1 cut(s) 544
BstC8I GCNNGC 3 cut(s) 326, 330, 560
BstDEI CTNAG 2 cut(s) 420, 440
BstFNI CGCG 1 cut(s) 665
BstKTI GATC 4 cut(s) 196, 353, 409, 448
BstMAI GTCTC 2 cut(s) 354, 566
BstMBI GATC 4 cut(s) 193, 350, 406, 445
BstMCI CGRYCG 1 cut(s) 448
BstMWI GCNNNNNNNGC 2 cut(s) 555, 596
BstNI CCWGG 1 cut(s) 569
BstNSI RCATGY 1 cut(s) 380
BstSCI CCNGG 1 cut(s) 567
BstSLI GKGCMC 1 cut(s) 237
BstUI CGCG 1 cut(s) 665
BstV2I GAAGAC 1 cut(s) 387
BstX2I RGATCY 2 cut(s) 193, 350
BstYI RGATCY 2 cut(s) 193, 350
Bsu15I ATCGAT 1 cut(s) 264
BsuRI GGCC 2 cut(s) 253, 579
BsuTUI ATCGAT 1 cut(s) 264
BtsIMutI CAGTG 3 cut(s) 308, 471, 602
Cac8I GCNNGC 3 cut(s) 326, 330, 560
CciI TCATGA 1 cut(s) 403
Cfr13I GGNCC 2 cut(s) 97, 251
ClaI ATCGAT 1 cut(s) 264
CseI GACGC 1 cut(s) 212
Csp6I GTAC 4 cut(s) 317, 380, 452, 652
CviAII CATG 3 cut(s) 311, 377, 404
CviQI GTAC 4 cut(s) 317, 380, 452, 652
DdeI CTNAG 2 cut(s) 420, 440
DpnI GATC 4 cut(s) 195, 352, 408, 447
DpnII GATC 4 cut(s) 193, 350, 406, 445
Eam1104I CTCTTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 352
Eco31I GGTCTC 1 cut(s) 354
Eco32I GATATC 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 97
Eco57I CTGAAG 2 cut(s) 270, 410
EcoRII CCWGG 1 cut(s) 567
EcoRV GATATC 1 cut(s) 541
EcoT22I ATGCAT 1 cut(s) 484
FaeI CATG 3 cut(s) 314, 380, 407
FaiI YATR 8 cut(s) 279, 312, 335, 378, 405, 593, 615, 635
FaqI GGGAC 2 cut(s) 254, 645
FatI CATG 3 cut(s) 310, 376, 403
FauI CCCGC 2 cut(s) 670, 683
FbaI TGATCA 1 cut(s) 406
Fnu4HI GCNGC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 31
FspBI CTAG 1 cut(s) 687
GluI GCNGC 1 cut(s) 31
GsuI CTGGAG 2 cut(s) 284, 590
HaeIII GGCC 2 cut(s) 253, 579
HapII CCGG 2 cut(s) 197, 354
HgaI GACGC 1 cut(s) 212
Hin1I GRCGYC 2 cut(s) 55, 156
Hin1II CATG 3 cut(s) 314, 380, 407
HincII GTYRAC 1 cut(s) 246
HindII GTYRAC 1 cut(s) 246
HindIII AAGCTT 2 cut(s) 434, 560
HinfI GANTC 3 cut(s) 71, 172, 307
HpaII CCGG 2 cut(s) 197, 354
Hpy166II GTNNAC 5 cut(s) 100, 235, 246, 306, 452
Hpy188I TCNGA 3 cut(s) 341, 411, 423
Hpy188III TCNNGA 3 cut(s) 197, 354, 404
Hpy8I GTNNAC 5 cut(s) 100, 235, 246, 306, 452
Hpy99I CGWCG 1 cut(s) 670
HpyAV CCTTC 2 cut(s) 294, 652
HpyCH4III ACNGT 4 cut(s) 384, 461, 606, 620
HpyCH4IV ACGT 2 cut(s) 55, 156
HpyCH4V TGCA 4 cut(s) 229, 235, 482, 626
HpyF10VI GCNNNNNNNGC 2 cut(s) 555, 596
HpyF3I CTNAG 2 cut(s) 420, 440
HpySE526I ACGT 2 cut(s) 55, 156
Hsp92I GRCGYC 2 cut(s) 55, 156
Hsp92II CATG 3 cut(s) 314, 380, 407
Kpn2I TCCGGA 2 cut(s) 196, 353
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 4 cut(s) 193, 350, 406, 445
LmnI GCTCC 1 cut(s) 474
LweI GCATC 1 cut(s) 409
MaeI CTAG 1 cut(s) 687
MaeII ACGT 2 cut(s) 55, 156
MalI GATC 4 cut(s) 195, 352, 408, 447
MboI GATC 4 cut(s) 193, 350, 406, 445
MboII GAAGA 5 cut(s) 56, 157, 369, 387, 548
MflI RGATCY 2 cut(s) 193, 350
MhlI GDGCHC 1 cut(s) 237
MlyI GAGTC 1 cut(s) 301
MmeI TCCRAC 1 cut(s) 364
Mph1103I ATGCAT 1 cut(s) 484
MroI TCCGGA 2 cut(s) 196, 353
MseI TTAA 1 cut(s) 545
MslI CAYNNNNRTG 4 cut(s) 83, 85, 184, 186
MspA1I CMGCKG 1 cut(s) 328
MspCI CTTAAG 1 cut(s) 544
MspI CCGG 2 cut(s) 197, 354
MspR9I CCNGG 1 cut(s) 569
MvaI CCWGG 1 cut(s) 569
MvnI CGCG 1 cut(s) 665
MwoI GCNNNNNNNGC 2 cut(s) 555, 596
NdeII GATC 4 cut(s) 193, 350, 406, 445
NlaIII CATG 3 cut(s) 314, 380, 407
NlaIV GGNNCC 2 cut(s) 98, 195
NsiI ATGCAT 1 cut(s) 484
NspI RCATGY 1 cut(s) 380
OliI CACNNNNGTG 2 cut(s) 83, 184
PagI TCATGA 1 cut(s) 403
PfeI GAWTC 2 cut(s) 71, 172
PkrI GCNGC 1 cut(s) 32
Ple19I CGATCG 1 cut(s) 448
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
Psp6I CCWGG 1 cut(s) 567
PspGI CCWGG 1 cut(s) 567
PspN4I GGNNCC 2 cut(s) 98, 195
PspPI GGNCC 2 cut(s) 97, 251
PsuI RGATCY 2 cut(s) 193, 350
PvuI CGATCG 1 cut(s) 448
PvuII CAGCTG 1 cut(s) 328
RsaI GTAC 4 cut(s) 318, 381, 453, 653
RsaNI GTAC 4 cut(s) 317, 380, 452, 652
RseI CAYNNNNRTG 4 cut(s) 83, 85, 184, 186
SaqAI TTAA 1 cut(s) 545
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 4 cut(s) 193, 350, 406, 445
Sau96I GGNCC 2 cut(s) 97, 251
ScaI AGTACT 1 cut(s) 653
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 1 cut(s) 569
SduI GDGCHC 1 cut(s) 237
SfaNI GCATC 1 cut(s) 409
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 4 cut(s) 83, 85, 184, 186
SmlI CTYRAG 1 cut(s) 544
SmoI CTYRAG 1 cut(s) 544
SsiI CCGC 5 cut(s) 8, 30, 109, 663, 690
SspMI CTAG 1 cut(s) 687
StyD4I CCNGG 1 cut(s) 567
TaaI ACNGT 4 cut(s) 384, 461, 606, 620
TaiI ACGT 2 cut(s) 58, 159
TaqI TCGA 2 cut(s) 264, 586
TatI WGTACW 2 cut(s) 379, 651
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 2 cut(s) 71, 172
Tru1I TTAA 1 cut(s) 545
Tru9I TTAA 1 cut(s) 545
TscAI CASTG 3 cut(s) 308, 471, 609
TspGWI ACGGA 4 cut(s) 52, 66, 153, 167
TspRI CASTG 3 cut(s) 308, 471, 609
Vha464I CTTAAG 1 cut(s) 544
VneI GTGCAC 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 97
XceI RCATGY 1 cut(s) 380
XspI CTAG 1 cut(s) 687
ZraI GACGTC 2 cut(s) 56, 157
ZrmI AGTACT 1 cut(s) 653
Zsp2I ATGCAT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.