Rmu_sc0007953.1_g000001

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007953.1
OG0000179
Physical Location & Seq
Forward (+)
1 .. 2676
2676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007953.1_g000001.1.cds

Sequence Viewer

Length: 2239 bp
gtttcgacaaccgagatctggaagagaccaacaaaactcgcatgtactgttgctgaagtcttcgcatcatgatcagaacacccctcagaccccattcaagcttctcagcgatcgtgtacgcaacggttcggtgaagtggagcaatgcatttcgtgcaaacgggggtttctcttacacagaattctactgggaatgggtagaagatatcttaagcaggaatgacaagcttactcgggaggccggtctttatcgagcgatattcgcctcactattcagctatgaccgtgttgcatctgtcatacgagctttctgcgagtactggtgccccgcgacggatactctccacacatctagcggagaaatgtccatctccctctgggatttggaccaactcagaggtttgcccattgctggacggttttatgatgaggtggttccagctgctgaagagcttactgtagcaagcaaagggagtcaacagagctaccgctatttgtttctcgcctaccataagctttgcaaagaaggccaagggcagaaagtgaagataacttcatggatacgatattggtatagaggagctttgcgctataagagacctccaaacaaaagcaccaggaacaaaagagatcctccccagaatgtgtttaatccatctggcaggatccatgagatccgaccacgtacttctgcagacctcgcagtatttgatgacttaggcattgagagtgaagatatagagcccacctatttggctgcctttcttgcttgttggttgtgtctgtttgttttacccagagacgacactggtttgattcgtccgggagtattcaaagttgccaacaaaatgtcacagggtgtacagttttgcctagcagtaccagtgttggccaacatctatcagggtttaggcgagatttctgtttccagtaatccaggtaactgctcggctgcccttccttttcattatatttatgcatggctagtagagtactttggcacccactttcagtctccgcttcccaacgacctaaggcctcgtatggttcgcttctctggagaattttcagctaaatattgtggggactcacaggcgctttctttgttcaatgcatgtgataatgtgaggatggatgcattttccagggataaccgacgagtcattcagccacacagtccacatcggttcagtcgacagtttggttatgtccaagacgttcctggcagtcttacgaacgacattcgcaccagtgtattggcgttgatttataagcattgggattcttgcaccagaatgaacaccaagtgcgcgataacgttgccgacccaaagtgctatcacggagtacatggttactcaagactatgtcgactggtggtctaaagtgtaccattcgacaccagtgaaagcaacgaaagaagtgcctactattgaatgtagcaccaacgtccctgcgcctcctaataggactttgcttcctagtagtgattggcagactcatctgcccaacactctagatgatgatggggactctttagattctcacattgctttggctcatccacctaagttgaaaagacctgccatcaaagaaagaaggcatagtggaagtagcgagattgatgatcattcactttgggggaacgatgacgcctcttcagacgctatacgtgttccttctgcatgggaacttgaggcttacggtttacccacaaaaggaaaatccaatgcaaagaatgactcacagcaaattgaccctacaggtctacttaccatggtgcatcctcctaagcctctgaacaccatagccttttctgaggcctctcttggtggagctactattatagatgccagtcgaagttttcgtgattttcgtcaagaagctgctactgcagtttgtgaacaaattgaagatatgatattgaagcactcctccaagactattctttccagcaagggggaacttgacaagctgatagctgagcttagccattatgggattgatccttcatccgtaaggggaaaagttgaaggattgttgactagtgctgaccaatacaacctggcacgactttcttgttcacgcaaggctactccaggcacacgtattcaacgtcttcctgacacagagtctgaaattgcgaaggtcacttcaattcatcaagctgactctgatcatcgccaatctgcactccagtctttggagaaattaaaagaggtgcaacgaaaattggagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

745

Amino Acids

83.91

Weight (kDa)

8.1

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1270
Acc36I ACCTGC 1 cut(s) 1589
AccB1I GGYRCC 2 cut(s) 322, 999
AccB7I CCANNNNNTGG 1 cut(s) 2201
AccI GTMKAC 3 cut(s) 1193, 1369, 1766
AccII CGCG 2 cut(s) 330, 1311
AciI CCGC 4 cut(s) 328, 355, 488, 1017
AclI AACGTT 1 cut(s) 1317
AclWI GGATC 5 cut(s) 624, 659, 668, 672, 1998
AcoI YGGCCR 1 cut(s) 889
AcsI RAATTY 2 cut(s) 180, 1062
AcuI CTGAAG 3 cut(s) 75, 466, 1642
AcyI GRCGYC 1 cut(s) 1651
AdeI CACNNNGTG 2 cut(s) 858, 1306
AfaI GTAC 9 cut(s) 46, 118, 318, 686, 862, 880, 993, 1347, 1389
AfiI CCNNNNNNNGG 6 cut(s) 18, 332, 411, 1716, 1957, 2201
AflII CTTAAG 1 cut(s) 209
AflIII ACRYGT 2 cut(s) 1670, 2103
AhdI GACNNNNNGTC 2 cut(s) 1376, 2129
AhlI ACTAGT 1 cut(s) 2043
AjnI CCWGG 6 cut(s) 615, 935, 1143, 1220, 2062, 2096
Alw26I GTCTC 4 cut(s) 19, 590, 793, 1018
AlwI GGATC 5 cut(s) 624, 659, 668, 672, 1998
AlwNI CAGNNNCTG 2 cut(s) 444, 2133
Ama87I CYCGRG 1 cut(s) 232
AoxI GGCC 5 cut(s) 238, 527, 889, 1035, 1819
ApeKI GCWGC 4 cut(s) 441, 756, 951, 1884
ApoI RAATTY 2 cut(s) 180, 1062
AspLEI GCGC 4 cut(s) 589, 1097, 1311, 1457
AspS9I GGNCC 1 cut(s) 386
AsuC2I CCSGG 1 cut(s) 823
AsuHPI GGTGA 1 cut(s) 143
AvaI CYCGRG 1 cut(s) 232
AvaII GGWCC 1 cut(s) 386
AxyI CCTNAGG 1 cut(s) 1032
BaeGI GKGCMC 1 cut(s) 327
BalI TGGCCA 1 cut(s) 891
BamHI GGATCC 1 cut(s) 664
BanI GGYRCC 2 cut(s) 322, 999
BanII GRGCYC 1 cut(s) 745
BbsI GAAGAC 2 cut(s) 52, 2109
BbvI GCAGC 4 cut(s) 428, 743, 938, 1871
BccI CCATC 5 cut(s) 375, 662, 1124, 1518, 1593
BcgI CGANNNNNNTGC 6 cut(s) 292, 326, 1301, 1335, 1403, 1437
BciT130I CCWGG 6 cut(s) 617, 937, 1145, 1222, 2064, 2098
BciVI GTATCC 2 cut(s) 329, 553
BclI TGATCA 3 cut(s) 71, 1625, 2174
BcnI CCSGG 1 cut(s) 823
BcoDI GTCTC 4 cut(s) 19, 590, 793, 1018
BcuI ACTAGT 1 cut(s) 2043
BfaI CTAG 6 cut(s) 352, 873, 984, 1480, 1515, 2044
BfmI CTRYAG 4 cut(s) 457, 691, 1759, 1891
BfoI RGCGCY 1 cut(s) 1098
BfrI CTTAAG 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 1589
BfuI GTATCC 2 cut(s) 329, 553
BglII AGATCT 1 cut(s) 15
BisI GCNGC 4 cut(s) 442, 757, 952, 1885
BlpI GCTNAGC 2 cut(s) 1981, 1986
BlsI GCNGC 4 cut(s) 443, 758, 953, 1886
BmcAI AGTACT 2 cut(s) 318, 993
Bme1390I CCNGG 7 cut(s) 617, 823, 937, 1145, 1222, 2064, 2098
Bme18I GGWCC 1 cut(s) 386
BmeRI GACNNNNNGTC 2 cut(s) 1376, 2129
BmeT110I CYCGRG 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 386
BmiI GGNNCC 4 cut(s) 324, 436, 666, 1001
BmrFI CCNGG 7 cut(s) 617, 823, 937, 1145, 1222, 2064, 2098
BmrI ACTGGG 1 cut(s) 197
BmsI GCATC 5 cut(s) 74, 300, 1124, 1790, 1838
BmuI ACTGGG 1 cut(s) 197
BpiI GAAGAC 2 cut(s) 52, 2109
BpmI CTGGAG 3 cut(s) 1078, 2080, 2178
Bpu10I CCTNAGC 1 cut(s) 1789
Bpu1102I GCTNAGC 2 cut(s) 1981, 1986
BpuEI CTTGAG 2 cut(s) 1342, 1713
BpuMI CCSGG 1 cut(s) 823
BsaAI YACGTR 3 cut(s) 684, 1671, 2106
BsaHI GRCGYC 1 cut(s) 1651
BsaI GGTCTC 2 cut(s) 19, 590
BsaJI CCNNGG 3 cut(s) 530, 1144, 1774
Bsc4I CCNNNNNNNGG 6 cut(s) 18, 332, 411, 1716, 1957, 2201
Bse118I RCCGGY 1 cut(s) 240
Bse21I CCTNAGG 1 cut(s) 1032
Bse3DI GCAATG 3 cut(s) 149, 406, 1546
BseBI CCWGG 6 cut(s) 617, 937, 1145, 1222, 2064, 2098
BseDI CCNNGG 3 cut(s) 530, 1144, 1774
BseGI GGATG 5 cut(s) 1135, 1139, 1559, 1781, 2010
BseLI CCNNNNNNNGG 6 cut(s) 18, 332, 411, 1716, 1957, 2201
BseMI GCAATG 3 cut(s) 149, 406, 1546
BseMII CTCAG 5 cut(s) 99, 119, 407, 1807, 1972
BseRI GAGGAG 2 cut(s) 592, 1922
BseSI GKGCMC 1 cut(s) 327
BseXI GCAGC 4 cut(s) 428, 743, 938, 1871
BsgI GTGCAG 1 cut(s) 2173
Bsh1236I CGCG 2 cut(s) 330, 1311
Bsh1285I CGRYCG 1 cut(s) 113
BshFI GGCC 5 cut(s) 240, 529, 891, 1037, 1821
BshNI GGYRCC 2 cut(s) 322, 999
BsiEI CGRYCG 1 cut(s) 113
BsiHKCI CYCGRG 1 cut(s) 232
BsiSI CCGG 2 cut(s) 241, 822
BslFI GGGAC 3 cut(s) 1098, 1434, 1542
BslI CCNNNNNNNGG 6 cut(s) 18, 332, 411, 1716, 1957, 2201
BsmAI GTCTC 4 cut(s) 19, 590, 793, 1018
BsmBI CGTCTC 1 cut(s) 793
BsmFI GGGAC 3 cut(s) 1098, 1434, 1542
BsnI GGCC 5 cut(s) 240, 529, 891, 1037, 1821
Bso31I GGTCTC 2 cut(s) 19, 590
BsoBI CYCGRG 1 cut(s) 232
Bsp1286I GDGCHC 2 cut(s) 327, 745
Bsp1407I TGTACA 1 cut(s) 860
Bsp143I GATC 9 cut(s) 15, 71, 110, 629, 664, 673, 1625, 2003, 2174
Bsp1720I GCTNAGC 2 cut(s) 1981, 1986
Bsp19I CCATGG 1 cut(s) 1774
BspACI CCGC 4 cut(s) 328, 355, 488, 1017
BspANI GGCC 5 cut(s) 240, 529, 891, 1037, 1821
BspCNI CTCAG 5 cut(s) 98, 118, 406, 1808, 1973
BspFNI CGCG 2 cut(s) 330, 1311
BspHI TCATGA 1 cut(s) 68
BspLI GGNNCC 4 cut(s) 324, 436, 666, 1001
BspMAI CTGCAG 2 cut(s) 695, 1895
BspMI ACCTGC 1 cut(s) 1589
BspPI GGATC 5 cut(s) 624, 659, 668, 672, 1998
BspQI GCTCTTC 1 cut(s) 442
BspT107I GGYRCC 2 cut(s) 322, 999
BspTI CTTAAG 1 cut(s) 209
BspTNI GGTCTC 2 cut(s) 19, 590
BsrDI GCAATG 3 cut(s) 149, 406, 1546
BsrFI RCCGGY 1 cut(s) 240
BsrGI TGTACA 1 cut(s) 860
BssAI RCCGGY 1 cut(s) 240
BssECI CCNNGG 3 cut(s) 530, 1144, 1774
BssMI GATC 9 cut(s) 15, 71, 110, 629, 664, 673, 1625, 2003, 2174
BssNI GRCGYC 1 cut(s) 1651
BssT1I CCWWGG 2 cut(s) 530, 1774
Bst2UI CCWGG 6 cut(s) 617, 937, 1145, 1222, 2064, 2098
Bst4CI ACNGT 9 cut(s) 49, 126, 285, 418, 458, 865, 1176, 1198, 1704
Bst6I CTCTTC 3 cut(s) 17, 442, 1661
BstACI GRCGYC 1 cut(s) 1651
BstAFI CTTAAG 1 cut(s) 209
BstAPI GCANNNNNTGC 1 cut(s) 153
BstAUI TGTACA 1 cut(s) 860
BstBAI YACGTR 3 cut(s) 684, 1671, 2106
BstC8I GCNNGC 1 cut(s) 464
BstDSI CCRYGG 1 cut(s) 1774
BstF5I GGATG 5 cut(s) 1135, 1139, 1559, 1781, 2010
BstFNI CGCG 2 cut(s) 330, 1311
BstH2I RGCGCY 1 cut(s) 1098
BstHHI GCGC 4 cut(s) 589, 1097, 1311, 1457
BstKTI GATC 9 cut(s) 18, 74, 113, 632, 667, 676, 1628, 2006, 2177
BstMAI GTCTC 4 cut(s) 19, 590, 793, 1018
BstMBI GATC 9 cut(s) 15, 71, 110, 629, 664, 673, 1625, 2003, 2174
BstMCI CGRYCG 1 cut(s) 113
BstMWI GCNNNNNNNGC 6 cut(s) 153, 261, 526, 699, 765, 1890
BstNI CCWGG 6 cut(s) 617, 937, 1145, 1222, 2064, 2098
BstNSI RCATGY 2 cut(s) 45, 1117
BstSCI CCNGG 7 cut(s) 615, 821, 935, 1143, 1220, 2062, 2096
BstSFI CTRYAG 4 cut(s) 457, 691, 1759, 1891
BstSLI GKGCMC 1 cut(s) 327
BstUI CGCG 2 cut(s) 330, 1311
BstV1I GCAGC 4 cut(s) 428, 743, 938, 1871
BstV2I GAAGAC 2 cut(s) 52, 2109
BstX2I RGATCY 4 cut(s) 15, 629, 664, 673
BstXI CCANNNNNNTGG 2 cut(s) 752, 1256
BstYI RGATCY 4 cut(s) 15, 629, 664, 673
Bsu36I CCTNAGG 1 cut(s) 1032
BsuI GTATCC 2 cut(s) 329, 553
BsuRI GGCC 5 cut(s) 240, 529, 891, 1037, 1821
BtgI CCRYGG 1 cut(s) 1774
BtgZI GCGATG 1 cut(s) 2163
BtsCI GGATG 5 cut(s) 1135, 1139, 1559, 1781, 2010
BtsIMutI CAGTG 4 cut(s) 805, 889, 1256, 1408
BveI ACCTGC 1 cut(s) 1589
Cac8I GCNNGC 1 cut(s) 464
CaiI CAGNNNCTG 2 cut(s) 444, 2133
CciI TCATGA 1 cut(s) 68
CfoI GCGC 4 cut(s) 589, 1097, 1311, 1457
Cfr10I RCCGGY 1 cut(s) 240
Cfr13I GGNCC 1 cut(s) 386
CseI GACGC 2 cut(s) 1659, 1671
Csp6I GTAC 9 cut(s) 45, 117, 317, 685, 861, 879, 992, 1346, 1388
CspCI CAANNNNNGTGG 2 cut(s) 1552, 1587
CviAII CATG 9 cut(s) 42, 69, 556, 669, 979, 1114, 1349, 1684, 1775
CviQI GTAC 9 cut(s) 45, 117, 317, 685, 861, 879, 992, 1346, 1388
DpnI GATC 9 cut(s) 17, 73, 112, 631, 666, 675, 1627, 2005, 2176
DpnII GATC 9 cut(s) 15, 71, 110, 629, 664, 673, 1625, 2003, 2174
DraIII CACNNNGTG 2 cut(s) 858, 1306
DriI GACNNNNNGTC 2 cut(s) 1376, 2129
EaeI YGGCCR 1 cut(s) 889
Eam1104I CTCTTC 3 cut(s) 17, 442, 1661
Eam1105I GACNNNNNGTC 2 cut(s) 1376, 2129
EarI CTCTTC 3 cut(s) 17, 442, 1661
Eco130I CCWWGG 2 cut(s) 530, 1774
Eco147I AGGCCT 2 cut(s) 1037, 1821
Eco24I GRGCYC 1 cut(s) 745
Eco31I GGTCTC 2 cut(s) 19, 590
Eco32I GATATC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 386
Eco57I CTGAAG 3 cut(s) 75, 466, 1642
Eco81I CCTNAGG 1 cut(s) 1032
Eco88I CYCGRG 1 cut(s) 232
EcoRI GAATTC 1 cut(s) 180
EcoRII CCWGG 6 cut(s) 615, 935, 1143, 1220, 2062, 2096
EcoRV GATATC 1 cut(s) 206
EcoT14I CCWWGG 2 cut(s) 530, 1774
EcoT22I ATGCAT 4 cut(s) 149, 980, 1115, 1139
EcoT38I GRGCYC 1 cut(s) 745
ErhI CCWWGG 2 cut(s) 530, 1774
Esp3I CGTCTC 1 cut(s) 793
FaeI CATG 9 cut(s) 45, 72, 559, 672, 982, 1117, 1352, 1687, 1778
FaqI GGGAC 3 cut(s) 1098, 1434, 1542
FatI CATG 9 cut(s) 41, 68, 555, 668, 978, 1113, 1348, 1683, 1774
FauI CCCGC 1 cut(s) 335
FbaI TGATCA 3 cut(s) 71, 1625, 2174
FblI GTMKAC 3 cut(s) 1193, 1369, 1766
Fnu4HI GCNGC 4 cut(s) 442, 757, 952, 1885
FokI GGATG 5 cut(s) 1142, 1146, 1546, 1768, 1997
FriOI GRGCYC 1 cut(s) 745
Fsp4HI GCNGC 4 cut(s) 442, 757, 952, 1885
FspBI CTAG 6 cut(s) 352, 873, 984, 1480, 1515, 2044
GlaI GCGC 4 cut(s) 588, 1096, 1310, 1456
GluI GCNGC 4 cut(s) 442, 757, 952, 1885
GsuI CTGGAG 3 cut(s) 1078, 2080, 2178
HaeII RGCGCY 1 cut(s) 1098
HaeIII GGCC 5 cut(s) 240, 529, 891, 1037, 1821
HapII CCGG 2 cut(s) 241, 822
HgaI GACGC 2 cut(s) 1659, 1671
HhaI GCGC 4 cut(s) 589, 1097, 1311, 1457
Hin1I GRCGYC 1 cut(s) 1651
Hin1II CATG 9 cut(s) 45, 72, 559, 672, 982, 1117, 1352, 1687, 1778
Hin6I GCGC 4 cut(s) 587, 1095, 1309, 1455
HinP1I GCGC 4 cut(s) 587, 1095, 1309, 1455
HincII GTYRAC 4 cut(s) 477, 1194, 1370, 2041
HindII GTYRAC 4 cut(s) 477, 1194, 1370, 2041
HindIII AAGCTT 3 cut(s) 99, 225, 513
HpaII CCGG 2 cut(s) 241, 822
HphI GGTGA 1 cut(s) 143
Hpy188I TCNGA 9 cut(s) 76, 88, 396, 678, 1661, 1798, 1817, 2135, 2174
Hpy188III TCNNGA 9 cut(s) 19, 69, 234, 1057, 1359, 1515, 1866, 1878, 2121
Hpy99I CGWCG 2 cut(s) 335, 1159
HpyAV CCTTC 7 cut(s) 519, 966, 1591, 1687, 2017, 2025, 2138
HpyCH4III ACNGT 9 cut(s) 49, 126, 285, 418, 458, 865, 1176, 1198, 1704
HpyCH4IV ACGT 7 cut(s) 683, 1216, 1317, 1447, 1670, 2105, 2114
HpyF10VI GCNNNNNNNGC 6 cut(s) 153, 261, 526, 699, 765, 1890
HpySE526I ACGT 7 cut(s) 683, 1216, 1317, 1447, 1670, 2105, 2114
Hsp92I GRCGYC 1 cut(s) 1651
Hsp92II CATG 9 cut(s) 45, 72, 559, 672, 982, 1117, 1352, 1687, 1778
HspAI GCGC 4 cut(s) 587, 1095, 1309, 1455
Ksp22I TGATCA 3 cut(s) 71, 1625, 2174
Kzo9I GATC 9 cut(s) 15, 71, 110, 629, 664, 673, 1625, 2003, 2174
LguI GCTCTTC 1 cut(s) 442
LmnI GCTCC 3 cut(s) 139, 579, 1833
Lsp1109I GCAGC 4 cut(s) 428, 743, 938, 1871
LweI GCATC 5 cut(s) 74, 300, 1124, 1790, 1838
MaeI CTAG 6 cut(s) 352, 873, 984, 1480, 1515, 2044
MaeII ACGT 7 cut(s) 683, 1216, 1317, 1447, 1670, 2105, 2114
MaeIII GTNAC 4 cut(s) 850, 939, 1352, 2147
MalI GATC 9 cut(s) 17, 73, 112, 631, 666, 675, 1627, 2005, 2176
MboI GATC 9 cut(s) 15, 71, 110, 629, 664, 673, 1625, 2003, 2174
MboII GAAGA 9 cut(s) 34, 52, 213, 459, 557, 744, 1648, 1923, 2109
MflI RGATCY 4 cut(s) 15, 629, 664, 673
MhlI GDGCHC 2 cut(s) 327, 745
MlsI TGGCCA 1 cut(s) 891
MluCI AATT 8 cut(s) 180, 1062, 1750, 1906, 2137, 2155, 2208, 2229
MluNI TGGCCA 1 cut(s) 891
MlyI GAGTC 8 cut(s) 482, 1080, 1168, 1490, 1524, 1734, 2139, 2163
MmeI TCCRAC 1 cut(s) 701
Mox20I TGGCCA 1 cut(s) 891
Mph1103I ATGCAT 4 cut(s) 149, 980, 1115, 1139
MscI TGGCCA 1 cut(s) 891
MseI TTAA 3 cut(s) 210, 649, 2211
MslI CAYNNNNRTG 1 cut(s) 1293
Msp20I TGGCCA 1 cut(s) 891
MspA1I CMGCKG 1 cut(s) 441
MspCI CTTAAG 1 cut(s) 209
MspI CCGG 2 cut(s) 241, 822
MspR9I CCNGG 7 cut(s) 617, 823, 937, 1145, 1222, 2064, 2098
MvaI CCWGG 6 cut(s) 617, 937, 1145, 1222, 2064, 2098
MvnI CGCG 2 cut(s) 330, 1311
MwoI GCNNNNNNNGC 6 cut(s) 153, 261, 526, 699, 765, 1890
NciI CCSGG 1 cut(s) 823
NcoI CCATGG 1 cut(s) 1774
NdeII GATC 9 cut(s) 15, 71, 110, 629, 664, 673, 1625, 2003, 2174
NlaIII CATG 9 cut(s) 45, 72, 559, 672, 982, 1117, 1352, 1687, 1778
NlaIV GGNNCC 4 cut(s) 324, 436, 666, 1001
NmeAIII GCCGAG 1 cut(s) 927
NmuCI GTSAC 2 cut(s) 850, 2147
NsiI ATGCAT 4 cut(s) 149, 980, 1115, 1139
NspI RCATGY 2 cut(s) 45, 1117
PagI TCATGA 1 cut(s) 68
PceI AGGCCT 2 cut(s) 1037, 1821
PciSI GCTCTTC 1 cut(s) 442
PcsI WCGNNNNNNNCGW 4 cut(s) 1190, 1862, 1871, 2111
PfeI GAWTC 3 cut(s) 815, 1281, 1539
PflFI GACNNNGTC 1 cut(s) 1365
PflMI CCANNNNNTGG 1 cut(s) 2201
PfoI TCCNGGA 1 cut(s) 821
PkrI GCNGC 4 cut(s) 443, 758, 953, 1886
Ple19I CGATCG 1 cut(s) 113
PleI GAGTC 8 cut(s) 481, 1080, 1167, 1490, 1524, 1734, 2138, 2163
PpsI GAGTC 8 cut(s) 481, 1080, 1167, 1490, 1524, 1734, 2138, 2163
Ppu21I YACGTR 3 cut(s) 684, 1671, 2106
PsiI TTATAA 1 cut(s) 1270
Psp1406I AACGTT 1 cut(s) 1317
Psp6I CCWGG 6 cut(s) 615, 935, 1143, 1220, 2062, 2096
PspGI CCWGG 6 cut(s) 615, 935, 1143, 1220, 2062, 2096
PspN4I GGNNCC 4 cut(s) 324, 436, 666, 1001
PspPI GGNCC 1 cut(s) 386
PstI CTGCAG 2 cut(s) 695, 1895
PstNI CAGNNNCTG 2 cut(s) 444, 2133
PsuI RGATCY 4 cut(s) 15, 629, 664, 673
PsyI GACNNNGTC 1 cut(s) 1365
PvuI CGATCG 1 cut(s) 113
PvuII CAGCTG 1 cut(s) 441
RsaI GTAC 9 cut(s) 46, 118, 318, 686, 862, 880, 993, 1347, 1389
RsaNI GTAC 9 cut(s) 45, 117, 317, 685, 861, 879, 992, 1346, 1388
RseI CAYNNNNRTG 1 cut(s) 1293
SalI GTCGAC 2 cut(s) 1192, 1368
SapI GCTCTTC 1 cut(s) 442
SaqAI TTAA 3 cut(s) 210, 649, 2211
SatI GCNGC 4 cut(s) 442, 757, 952, 1885
Sau3AI GATC 9 cut(s) 15, 71, 110, 629, 664, 673, 1625, 2003, 2174
Sau96I GGNCC 1 cut(s) 386
ScaI AGTACT 2 cut(s) 318, 993
SchI GAGTC 8 cut(s) 482, 1080, 1168, 1490, 1524, 1734, 2139, 2163
ScrFI CCNGG 7 cut(s) 617, 823, 937, 1145, 1222, 2064, 2098
SduI GDGCHC 2 cut(s) 327, 745
SfaNI GCATC 5 cut(s) 74, 300, 1124, 1790, 1838
SfcI CTRYAG 4 cut(s) 457, 691, 1759, 1891
SinI GGWCC 1 cut(s) 386
SmiMI CAYNNNNRTG 1 cut(s) 1293
SmlI CTYRAG 3 cut(s) 209, 1357, 1692
SmoI CTYRAG 3 cut(s) 209, 1357, 1692
SpeI ACTAGT 1 cut(s) 2043
Sse9I AATT 8 cut(s) 180, 1062, 1750, 1906, 2137, 2155, 2208, 2229
SseBI AGGCCT 2 cut(s) 1037, 1821
SsiI CCGC 4 cut(s) 328, 355, 488, 1017
SspI AATATT 1 cut(s) 1077
SspMI CTAG 6 cut(s) 352, 873, 984, 1480, 1515, 2044
StuI AGGCCT 2 cut(s) 1037, 1821
StyD4I CCNGG 7 cut(s) 615, 821, 935, 1143, 1220, 2062, 2096
StyI CCWWGG 2 cut(s) 530, 1774
TaaI ACNGT 9 cut(s) 49, 126, 285, 418, 458, 865, 1176, 1198, 1704
TaiI ACGT 7 cut(s) 686, 1219, 1320, 1450, 1673, 2108, 2117
TaqI TCGA 6 cut(s) 5, 251, 1193, 1369, 1395, 1856
TasI AATT 8 cut(s) 180, 1062, 1750, 1906, 2137, 2155, 2208, 2229
TatI WGTACW 5 cut(s) 44, 316, 860, 991, 1345
TfiI GAWTC 3 cut(s) 815, 1281, 1539
Tru1I TTAA 3 cut(s) 210, 649, 2211
Tru9I TTAA 3 cut(s) 210, 649, 2211
TscAI CASTG 4 cut(s) 812, 889, 1256, 1408
TseFI GTSAC 2 cut(s) 850, 2147
TseI GCWGC 4 cut(s) 441, 756, 951, 1884
Tsp45I GTSAC 2 cut(s) 850, 2147
TspDTI ATGAA 5 cut(s) 544, 954, 1311, 1999, 2148
TspGWI ACGGA 3 cut(s) 348, 1356, 2003
TspRI CASTG 4 cut(s) 812, 889, 1256, 1408
Tth111I GACNNNGTC 1 cut(s) 1365
Van91I CCANNNNNTGG 1 cut(s) 2201
Vha464I CTTAAG 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 386
XapI RAATTY 2 cut(s) 180, 1062
XbaI TCTAGA 1 cut(s) 1514
XceI RCATGY 2 cut(s) 45, 1117
XcmI CCANNNNNNNNNTGG 1 cut(s) 1218
XmiI GTMKAC 3 cut(s) 1193, 1369, 1766
XspI CTAG 6 cut(s) 352, 873, 984, 1480, 1515, 2044
ZrmI AGTACT 2 cut(s) 318, 993
Zsp2I ATGCAT 4 cut(s) 149, 980, 1115, 1139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.