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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 413 |
| AclWI | GGATC | 1 cut(s) | 83 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 42 |
| AflIII | ACRYGT | 1 cut(s) | 188 |
| AgsI | TTSAA | 3 cut(s) | 240, 467, 487 |
| AluBI | AGCT | 5 cut(s) | 58, 70, 251, 370, 433 |
| AluI | AGCT | 5 cut(s) | 58, 70, 251, 370, 433 |
| Alw26I | GTCTC | 2 cut(s) | 401, 431 |
| AlwI | GGATC | 1 cut(s) | 83 |
| Ama87I | CYCGRG | 1 cut(s) | 413 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 348 |
| AsuHPI | GGTGA | 1 cut(s) | 430 |
| AvaI | CYCGRG | 1 cut(s) | 413 |
| BbsI | GAAGAC | 1 cut(s) | 398 |
| BceAI | ACGGC | 1 cut(s) | 170 |
| BclI | TGATCA | 1 cut(s) | 259 |
| BcoDI | GTCTC | 2 cut(s) | 401, 431 |
| BfaI | CTAG | 2 cut(s) | 182, 338 |
| BmeT110I | CYCGRG | 1 cut(s) | 413 |
| BpiI | GAAGAC | 1 cut(s) | 398 |
| BpuEI | CTTGAG | 2 cut(s) | 263, 455 |
| BsaI | GGTCTC | 1 cut(s) | 401 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 42 |
| Bse3DI | GCAATG | 2 cut(s) | 423, 449 |
| BseGI | GGATG | 1 cut(s) | 95 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 42 |
| BseMI | GCAATG | 2 cut(s) | 423, 449 |
| BseRI | GAGGAG | 1 cut(s) | 7 |
| BsiHKCI | CYCGRG | 1 cut(s) | 413 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 42 |
| BsmAI | GTCTC | 2 cut(s) | 401, 431 |
| BsmBI | CGTCTC | 1 cut(s) | 431 |
| Bso31I | GGTCTC | 1 cut(s) | 401 |
| BsoBI | CYCGRG | 1 cut(s) | 413 |
| Bsp143I | GATC | 2 cut(s) | 88, 259 |
| BspPI | GGATC | 1 cut(s) | 83 |
| BspTNI | GGTCTC | 1 cut(s) | 401 |
| BsrDI | GCAATG | 2 cut(s) | 423, 449 |
| BssMI | GATC | 2 cut(s) | 88, 259 |
| Bst4CI | ACNGT | 2 cut(s) | 328, 476 |
| BstDEI | CTNAG | 2 cut(s) | 379, 498 |
| BstEII | GGTNACC | 1 cut(s) | 418 |
| BstF5I | GGATG | 1 cut(s) | 95 |
| BstKTI | GATC | 2 cut(s) | 91, 262 |
| BstMAI | GTCTC | 2 cut(s) | 401, 431 |
| BstMBI | GATC | 2 cut(s) | 88, 259 |
| BstNSI | RCATGY | 1 cut(s) | 192 |
| BstPI | GGTNACC | 1 cut(s) | 418 |
| BstV2I | GAAGAC | 1 cut(s) | 398 |
| BtsCI | GGATG | 1 cut(s) | 95 |
| BtsIMutI | CAGTG | 2 cut(s) | 333, 472 |
| CviAII | CATG | 2 cut(s) | 189, 359 |
| CviJI | RGCY | 9 cut(s) | 58, 70, 157, 176, 206, 251, 370, 433, 471 |
| CviKI_1 | RGCY | 9 cut(s) | 58, 70, 157, 176, 206, 251, 370, 433, 471 |
| DdeI | CTNAG | 2 cut(s) | 379, 498 |
| DpnI | GATC | 2 cut(s) | 90, 261 |
| DpnII | GATC | 2 cut(s) | 88, 259 |
| Eco31I | GGTCTC | 1 cut(s) | 401 |
| Eco88I | CYCGRG | 1 cut(s) | 413 |
| Eco91I | GGTNACC | 1 cut(s) | 418 |
| EcoO65I | GGTNACC | 1 cut(s) | 418 |
| Esp3I | CGTCTC | 1 cut(s) | 431 |
| FaeI | CATG | 2 cut(s) | 192, 362 |
| FaiI | YATR | 2 cut(s) | 190, 360 |
| FatI | CATG | 2 cut(s) | 188, 358 |
| FbaI | TGATCA | 1 cut(s) | 259 |
| FokI | GGATG | 1 cut(s) | 82 |
| FspBI | CTAG | 2 cut(s) | 182, 338 |
| Hin1II | CATG | 2 cut(s) | 192, 362 |
| HincII | GTYRAC | 2 cut(s) | 126, 376 |
| HindII | GTYRAC | 2 cut(s) | 126, 376 |
| HindIII | AAGCTT | 1 cut(s) | 368 |
| HinfI | GANTC | 2 cut(s) | 215, 254 |
| HphI | GGTGA | 1 cut(s) | 430 |
| Hpy166II | GTNNAC | 3 cut(s) | 126, 167, 376 |
| Hpy188I | TCNGA | 2 cut(s) | 220, 259 |
| Hpy8I | GTNNAC | 3 cut(s) | 126, 167, 376 |
| HpyAV | CCTTC | 1 cut(s) | 102 |
| HpyCH4III | ACNGT | 2 cut(s) | 328, 476 |
| HpyCH4IV | ACGT | 1 cut(s) | 199 |
| HpyCH4V | TGCA | 2 cut(s) | 227, 428 |
| HpyF3I | CTNAG | 2 cut(s) | 379, 498 |
| HpySE526I | ACGT | 1 cut(s) | 199 |
| Hsp92II | CATG | 2 cut(s) | 192, 362 |
| Ksp22I | TGATCA | 1 cut(s) | 259 |
| Kzo9I | GATC | 2 cut(s) | 88, 259 |
| LmnI | GCTCC | 1 cut(s) | 319 |
| LpnPI | CCDG | 2 cut(s) | 49, 188 |
| MaeI | CTAG | 2 cut(s) | 182, 338 |
| MaeII | ACGT | 1 cut(s) | 199 |
| MaeIII | GTNAC | 3 cut(s) | 232, 328, 418 |
| MalI | GATC | 2 cut(s) | 90, 261 |
| MboI | GATC | 2 cut(s) | 88, 259 |
| MboII | GAAGA | 2 cut(s) | 403, 475 |
| MluCI | AATT | 5 cut(s) | 222, 240, 269, 293, 314 |
| MlyI | GAGTC | 1 cut(s) | 248 |
| MnlI | CCTC | 4 cut(s) | 28, 109, 409, 422 |
| MroXI | GAANNNNTTC | 1 cut(s) | 348 |
| MseI | TTAA | 2 cut(s) | 72, 296 |
| NdeII | GATC | 2 cut(s) | 88, 259 |
| NlaIII | CATG | 2 cut(s) | 192, 362 |
| NmuCI | GTSAC | 3 cut(s) | 232, 328, 418 |
| NspI | RCATGY | 1 cut(s) | 192 |
| PaeR7I | CTCGAG | 1 cut(s) | 413 |
| PciI | ACATGT | 1 cut(s) | 188 |
| PdmI | GAANNNNTTC | 1 cut(s) | 348 |
| PfeI | GAWTC | 1 cut(s) | 215 |
| PleI | GAGTC | 1 cut(s) | 248 |
| PpsI | GAGTC | 1 cut(s) | 248 |
| PscI | ACATGT | 1 cut(s) | 188 |
| PspEI | GGTNACC | 1 cut(s) | 418 |
| PspXI | VCTCGAGB | 1 cut(s) | 413 |
| SaqAI | TTAA | 2 cut(s) | 72, 296 |
| Sau3AI | GATC | 2 cut(s) | 88, 259 |
| SchI | GAGTC | 1 cut(s) | 248 |
| SetI | ASST | 9 cut(s) | 60, 72, 78, 202, 234, 253, 372, 420, 435 |
| Sfr274I | CTCGAG | 1 cut(s) | 413 |
| SlaI | CTCGAG | 1 cut(s) | 413 |
| SmlI | CTYRAG | 3 cut(s) | 278, 413, 434 |
| SmoI | CTYRAG | 3 cut(s) | 278, 413, 434 |
| Sse9I | AATT | 5 cut(s) | 222, 240, 269, 293, 314 |
| SspMI | CTAG | 2 cut(s) | 182, 338 |
| TaaI | ACNGT | 2 cut(s) | 328, 476 |
| TaiI | ACGT | 1 cut(s) | 202 |
| TaqI | TCGA | 1 cut(s) | 414 |
| TasI | AATT | 5 cut(s) | 222, 240, 269, 293, 314 |
| TfiI | GAWTC | 1 cut(s) | 215 |
| Tru1I | TTAA | 2 cut(s) | 72, 296 |
| Tru9I | TTAA | 2 cut(s) | 72, 296 |
| TscAI | CASTG | 2 cut(s) | 333, 479 |
| TseFI | GTSAC | 3 cut(s) | 232, 328, 418 |
| Tsp45I | GTSAC | 3 cut(s) | 232, 328, 418 |
| TspDTI | ATGAA | 4 cut(s) | 23, 84, 357, 458 |
| TspGWI | ACGGA | 1 cut(s) | 88 |
| TspRI | CASTG | 2 cut(s) | 333, 479 |
| XceI | RCATGY | 1 cut(s) | 192 |
| XhoI | CTCGAG | 1 cut(s) | 413 |
| XmnI | GAANNNNTTC | 1 cut(s) | 348 |
| XspI | CTAG | 2 cut(s) | 182, 338 |