Rmu_sc0001075.1_g000027

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001075.1
OG0000179
Physical Location & Seq
Reverse (-)
127069 .. 129068
2000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001075.1_g000027.1.cds

Sequence Viewer

Length: 1866 bp
atggctttcttcaagtgcttcaagaaaggaacaatcaccatcctcgacaatccggaggacgctcagagtgatggcactactctgcaggtgtatccatcgttgactgggcctcaagcaatcgatgtccctccgtatgacccttctgctcacatccttcagtggactcatgtggtacctcgccagctagctatgttccgacaaccgagatctggcagagaccaacaaaactcgcacgtgctgttgcttaagtcttcgcatcatgatcagaacactcctcaagtcccattcacgcttctcaacgatcgtgtacgcaatgattcagtgaagtggagcaatgcatttcgcgcaaatggaggcttctcttacacagagttctattgggaatgggtagaagatatcttaagcaggaatggcaagcttacccgggagactggcctctatcgagctatattcgcctcactgttcagctatgatcgtgttgcacctgtcatacgagccttctgcgagtactggtgtcccgcgacgaataccctccacacttctagcggggaaatgtctatctccctctgggatttggaccaacttggagctgctgaagagctttctgcaacgagcaaagggagtcaacagagctgccgttatttgtttctcgcctaccataagctctgcaaagaaggccaagggcagaaggtgaaaataacttcctggatacaatattggtatagagcagctttgcgctataagaggcctccaaacaaaagcaccaggaacaaaagagatccgcccccgaatgtatttaatccatctggcaggatccatgagatccgacaacgtacttctgcagacctcgcagtctttgaggacttaggcgtagaaggtgaagatatagagcccacctacttggccgcttttcttgcttgttggttgtgcctgtttgttttacctggagaaaacatcggcttgattcgtccaggagtattcaaagtcgccagcaaaatgtcacaaggtgtacagttttgcctagcggtaccagtgctggcaagcatctatcagggttggaacgagatttctgtttctagcgatccaggtaattgctcagctgctcttccttttcattatatttatgcatggctagcagagtacttcggcacccactttcagtctccacttcccaacgacctaaggccccgtatggttcgcttctccggagaactttcagctaggcattttggagactcacaggctctttctttgttcgacacatgtgatacactgggtgtacagttttgcctagcggtaccagtgctggccagcatttatcagggtttgaacgagatttctgtttccagcgatccaggtaattgctcggctgctcttccttttcattatatttatgcatggctagcagagtacttcggcacccactttcagtctccacttcccaacgacctaaggccccgtatggttcgcttctccggagaactttcagctaggcattttggagactcacatgctctttctttgtttttgcattgggattcttgcactagaatggacactaactgtgaggtaacgttgccgatccagagtgctatcacggagtatatggttacccgagactatgttgattggtggtctaaagtgtatcattctacaccagtgaagacaacgagagtagcgcctactagtagaaccctacacaagcctctgaaagcaaaagaagacaaggacgtcaaccgcgctgcgcctcgtcgccagaatgtgattgcttgtgaagtcgaatgtagcaccaacgtccctgcgcttcctgatagggcttcactcccagataaggaccgtcaggctcatccagtcgacattctataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

621

Amino Acids

70.2

Weight (kDa)

7.26

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 76
AasI GACNNNNNNGTC 2 cut(s) 851, 1730
AatII GACGTC 1 cut(s) 1734
Acc36I ACCTGC 1 cut(s) 76
Acc65I GGTACC 3 cut(s) 172, 1027, 1297
AccB1I GGYRCC 5 cut(s) 172, 1027, 1148, 1297, 1418
AccI GTMKAC 1 cut(s) 1854
AccII CGCG 3 cut(s) 345, 521, 1740
AccIII TCCGGA 3 cut(s) 52, 1205, 1475
AciI CCGC 7 cut(s) 519, 546, 782, 906, 1025, 1295, 1738
AclI AACGTT 1 cut(s) 1574
AclWI GGATC 7 cut(s) 773, 808, 817, 821, 1076, 1346, 1576
AcoI YGGCCR 2 cut(s) 903, 1308
AcuI CTGAAG 2 cut(s) 140, 615
AcvI CACGTG 1 cut(s) 235
AcyI GRCGYC 1 cut(s) 1731
AdeI CACNNNGTG 2 cut(s) 1007, 1277
AfiI CCNNNNNNNGG 2 cut(s) 209, 1831
AflII CTTAAG 2 cut(s) 245, 400
AflIII ACRYGT 1 cut(s) 1262
AgsI TTSAA 4 cut(s) 13, 22, 982, 1330
AhlI ACTAGT 1 cut(s) 1685
AjnI CCWGG 6 cut(s) 704, 764, 943, 970, 1084, 1354
Alw26I GTCTC 7 cut(s) 210, 422, 1167, 1227, 1437, 1497, 1611
AlwI GGATC 7 cut(s) 773, 808, 817, 821, 1076, 1346, 1576
Ama87I CYCGRG 2 cut(s) 423, 1614
Aor13HI TCCGGA 3 cut(s) 52, 1205, 1475
AoxI GGCC 8 cut(s) 107, 433, 676, 746, 903, 1184, 1308, 1454
ApeKI GCWGC 6 cut(s) 590, 633, 728, 1100, 1370, 1742
Asp718I GGTACC 3 cut(s) 172, 1027, 1297
AspLEI GCGC 6 cut(s) 347, 738, 1681, 1742, 1747, 1804
AspS9I GGNCC 5 cut(s) 107, 577, 1185, 1455, 1834
AsuC2I CCSGG 2 cut(s) 424, 425
AsuHPI GGTGA 3 cut(s) 28, 703, 890
AsuNHI GCTAGC 3 cut(s) 184, 1132, 1402
AvaI CYCGRG 2 cut(s) 423, 1614
AvaII GGWCC 2 cut(s) 577, 1834
AxyI CCTNAGG 2 cut(s) 1181, 1451
BalI TGGCCA 1 cut(s) 1310
BamHI GGATCC 1 cut(s) 813
BanI GGYRCC 5 cut(s) 172, 1027, 1148, 1297, 1418
BanII GRGCYC 1 cut(s) 894
BbrPI CACGTG 1 cut(s) 235
BbsI GAAGAC 3 cut(s) 243, 1670, 1728
BbvI GCAGC 6 cut(s) 577, 620, 740, 1087, 1357, 1729
BccI CCATC 4 cut(s) 47, 65, 103, 811
BceAI ACGGC 1 cut(s) 621
BcgI CGANNNNNNTGC 2 cut(s) 483, 517
BciT130I CCWGG 6 cut(s) 706, 766, 945, 972, 1086, 1356
BciVI GTATCC 2 cut(s) 102, 702
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 2 cut(s) 424, 425
BcoDI GTCTC 7 cut(s) 210, 422, 1167, 1227, 1437, 1497, 1611
BcuI ACTAGT 1 cut(s) 1685
BfmI CTRYAG 2 cut(s) 83, 840
BfoI RGCGCY 1 cut(s) 1682
BfrI CTTAAG 2 cut(s) 245, 400
BfuAI ACCTGC 1 cut(s) 76
BfuI GTATCC 2 cut(s) 102, 702
BglII AGATCT 1 cut(s) 206
BisI GCNGC 7 cut(s) 591, 634, 729, 906, 1101, 1371, 1743
BlpI GCTNAGC 1 cut(s) 1096
BlsI GCNGC 7 cut(s) 592, 635, 730, 907, 1102, 1372, 1744
BmcAI AGTACT 3 cut(s) 509, 1142, 1412
Bme1390I CCNGG 8 cut(s) 424, 425, 706, 766, 945, 972, 1086, 1356
Bme18I GGWCC 2 cut(s) 577, 1834
BmeT110I CYCGRG 2 cut(s) 423, 1614
BmgT120I GGNCC 5 cut(s) 107, 577, 1185, 1455, 1834
BmiI GGNNCC 8 cut(s) 174, 815, 1029, 1150, 1187, 1299, 1420, 1457
BmrFI CCNGG 8 cut(s) 424, 425, 706, 766, 945, 972, 1086, 1356
BmrI ACTGGG 2 cut(s) 114, 1283
BmsI GCATC 2 cut(s) 265, 1053
BmtI GCTAGC 3 cut(s) 188, 1136, 1406
BmuI ACTGGG 2 cut(s) 114, 1283
BpiI GAAGAC 3 cut(s) 243, 1670, 1728
BpmI CTGGAG 1 cut(s) 966
Bpu1102I GCTNAGC 1 cut(s) 1096
BpuEI CTTGAG 2 cut(s) 96, 261
BpuMI CCSGG 2 cut(s) 424, 425
Bsa29I ATCGAT 1 cut(s) 120
BsaAI YACGTR 1 cut(s) 235
BsaHI GRCGYC 1 cut(s) 1731
BsaI GGTCTC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 423, 679
BsaWI WCCGGW 3 cut(s) 52, 1205, 1475
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 1831
Bse1I ACTGG 8 cut(s) 109, 436, 515, 1031, 1278, 1301, 1658, 1850
Bse21I CCTNAGG 2 cut(s) 1181, 1451
Bse3DI GCAATG 2 cut(s) 319, 340
BseAI TCCGGA 3 cut(s) 52, 1205, 1475
BseBI CCWGG 6 cut(s) 706, 766, 945, 972, 1086, 1356
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 423, 679
BseGI GGATG 3 cut(s) 39, 150, 1846
BseLI CCNNNNNNNGG 2 cut(s) 209, 1831
BseMI GCAATG 2 cut(s) 319, 340
BseMII CTCAG 2 cut(s) 77, 1110
BseNI ACTGG 8 cut(s) 109, 436, 515, 1031, 1278, 1301, 1658, 1850
BseRI GAGGAG 1 cut(s) 264
BseXI GCAGC 6 cut(s) 577, 620, 740, 1087, 1357, 1729
Bsh1236I CGCG 3 cut(s) 345, 521, 1740
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 8 cut(s) 109, 435, 678, 748, 905, 1186, 1310, 1456
BshNI GGYRCC 5 cut(s) 172, 1027, 1148, 1297, 1418
BshVI ATCGAT 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 304
BsiHKCI CYCGRG 2 cut(s) 423, 1614
BsiSI CCGG 4 cut(s) 53, 424, 1206, 1476
BslFI GGGAC 4 cut(s) 110, 266, 501, 1781
BslI CCNNNNNNNGG 2 cut(s) 209, 1831
BsmAI GTCTC 7 cut(s) 210, 422, 1167, 1227, 1437, 1497, 1611
BsmFI GGGAC 4 cut(s) 110, 266, 501, 1781
BsnI GGCC 8 cut(s) 109, 435, 678, 748, 905, 1186, 1310, 1456
Bso31I GGTCTC 1 cut(s) 210
BsoBI CYCGRG 2 cut(s) 423, 1614
Bsp1286I GDGCHC 1 cut(s) 894
Bsp13I TCCGGA 3 cut(s) 52, 1205, 1475
Bsp1407I TGTACA 2 cut(s) 1009, 1279
Bsp1720I GCTNAGC 1 cut(s) 1096
BspACI CCGC 7 cut(s) 519, 546, 782, 906, 1025, 1295, 1738
BspANI GGCC 8 cut(s) 109, 435, 678, 748, 905, 1186, 1310, 1456
BspCNI CTCAG 2 cut(s) 76, 1109
BspDI ATCGAT 1 cut(s) 120
BspEI TCCGGA 3 cut(s) 52, 1205, 1475
BspFNI CGCG 3 cut(s) 345, 521, 1740
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 8 cut(s) 174, 815, 1029, 1150, 1187, 1299, 1420, 1457
BspMAI CTGCAG 2 cut(s) 87, 844
BspMI ACCTGC 1 cut(s) 76
BspOI GCTAGC 3 cut(s) 188, 1136, 1406
BspPI GGATC 7 cut(s) 773, 808, 817, 821, 1076, 1346, 1576
BspQI GCTCTTC 3 cut(s) 591, 1110, 1380
BspT107I GGYRCC 5 cut(s) 172, 1027, 1148, 1297, 1418
BspTI CTTAAG 2 cut(s) 245, 400
BspTNI GGTCTC 1 cut(s) 210
BsrDI GCAATG 2 cut(s) 319, 340
BsrGI TGTACA 2 cut(s) 1009, 1279
BsrI ACTGG 8 cut(s) 109, 436, 515, 1031, 1278, 1301, 1658, 1850
BssECI CCNNGG 2 cut(s) 423, 679
BssNI GRCGYC 1 cut(s) 1731
BssT1I CCWWGG 1 cut(s) 679
Bst2UI CCWGG 6 cut(s) 706, 766, 945, 972, 1086, 1356
Bst4CI ACNGT 5 cut(s) 462, 1014, 1284, 1565, 1838
Bst6I CTCTTC 3 cut(s) 591, 1110, 1380
BstACI GRCGYC 1 cut(s) 1731
BstAFI CTTAAG 2 cut(s) 245, 400
BstAUI TGTACA 2 cut(s) 1009, 1279
BstBAI YACGTR 1 cut(s) 235
BstDEI CTNAG 5 cut(s) 63, 865, 1096, 1181, 1451
BstEII GGTNACC 1 cut(s) 1609
BstF5I GGATG 3 cut(s) 39, 150, 1846
BstFNI CGCG 3 cut(s) 345, 521, 1740
BstH2I RGCGCY 1 cut(s) 1682
BstHHI GCGC 6 cut(s) 347, 738, 1681, 1742, 1747, 1804
BstMAI GTCTC 7 cut(s) 210, 422, 1167, 1227, 1437, 1497, 1611
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 8 cut(s) 344, 411, 452, 675, 848, 914, 1133, 1403
BstNI CCWGG 6 cut(s) 706, 766, 945, 972, 1086, 1356
BstNSI RCATGY 2 cut(s) 1266, 1514
BstPI GGTNACC 1 cut(s) 1609
BstSCI CCNGG 8 cut(s) 422, 423, 704, 764, 943, 970, 1084, 1354
BstSFI CTRYAG 2 cut(s) 83, 840
BstUI CGCG 3 cut(s) 345, 521, 1740
BstV1I GCAGC 6 cut(s) 577, 620, 740, 1087, 1357, 1729
BstV2I GAAGAC 3 cut(s) 243, 1670, 1728
BstX2I RGATCY 4 cut(s) 206, 778, 813, 822
BstXI CCANNNNNNTGG 1 cut(s) 901
BstYI RGATCY 4 cut(s) 206, 778, 813, 822
Bsu15I ATCGAT 1 cut(s) 120
Bsu36I CCTNAGG 2 cut(s) 1181, 1451
BsuI GTATCC 2 cut(s) 102, 702
BsuRI GGCC 8 cut(s) 109, 435, 678, 748, 905, 1186, 1310, 1456
BsuTUI ATCGAT 1 cut(s) 120
BtsCI GGATG 3 cut(s) 39, 150, 1846
BtsIMutI CAGTG 7 cut(s) 164, 327, 458, 1038, 1271, 1308, 1665
BveI ACCTGC 1 cut(s) 76
CciI TCATGA 1 cut(s) 259
CfoI GCGC 6 cut(s) 347, 738, 1681, 1742, 1747, 1804
Cfr13I GGNCC 5 cut(s) 107, 577, 1185, 1455, 1834
Cfr9I CCCGGG 1 cut(s) 423
ClaI ATCGAT 1 cut(s) 120
CseI GACGC 1 cut(s) 68
CviAII CATG 7 cut(s) 167, 260, 818, 1128, 1263, 1398, 1511
DdeI CTNAG 5 cut(s) 63, 865, 1096, 1181, 1451
DraIII CACNNNGTG 2 cut(s) 1007, 1277
DrdI GACNNNNNNGTC 2 cut(s) 851, 1730
DseDI GACNNNNNNGTC 2 cut(s) 851, 1730
EaeI YGGCCR 2 cut(s) 903, 1308
Eam1104I CTCTTC 3 cut(s) 591, 1110, 1380
EarI CTCTTC 3 cut(s) 591, 1110, 1380
EciI GGCGGA 1 cut(s) 771
Eco130I CCWWGG 1 cut(s) 679
Eco147I AGGCCT 1 cut(s) 748
Eco24I GRGCYC 1 cut(s) 894
Eco31I GGTCTC 1 cut(s) 210
Eco32I GATATC 1 cut(s) 397
Eco47I GGWCC 2 cut(s) 577, 1834
Eco57I CTGAAG 2 cut(s) 140, 615
Eco72I CACGTG 1 cut(s) 235
Eco81I CCTNAGG 2 cut(s) 1181, 1451
Eco88I CYCGRG 2 cut(s) 423, 1614
Eco91I GGTNACC 1 cut(s) 1609
EcoO109I RGGNCCY 2 cut(s) 1185, 1455
EcoO65I GGTNACC 1 cut(s) 1609
EcoRII CCWGG 6 cut(s) 704, 764, 943, 970, 1084, 1354
EcoRV GATATC 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 679
EcoT22I ATGCAT 3 cut(s) 340, 1129, 1399
EcoT38I GRGCYC 1 cut(s) 894
ErhI CCWWGG 1 cut(s) 679
FaeI CATG 7 cut(s) 170, 263, 821, 1131, 1266, 1401, 1514
FaqI GGGAC 4 cut(s) 110, 266, 501, 1781
FatI CATG 7 cut(s) 166, 259, 817, 1127, 1262, 1397, 1510
FauI CCCGC 2 cut(s) 526, 539
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 1 cut(s) 1854
Fnu4HI GCNGC 7 cut(s) 591, 634, 729, 906, 1101, 1371, 1743
FokI GGATG 3 cut(s) 26, 137, 1833
FriOI GRGCYC 1 cut(s) 894
Fsp4HI GCNGC 7 cut(s) 591, 634, 729, 906, 1101, 1371, 1743
GlaI GCGC 6 cut(s) 346, 737, 1680, 1741, 1746, 1803
GluI GCNGC 7 cut(s) 591, 634, 729, 906, 1101, 1371, 1743
GsuI CTGGAG 1 cut(s) 966
HaeII RGCGCY 1 cut(s) 1682
HaeIII GGCC 8 cut(s) 109, 435, 678, 748, 905, 1186, 1310, 1456
HapII CCGG 4 cut(s) 53, 424, 1206, 1476
HgaI GACGC 1 cut(s) 68
HhaI GCGC 6 cut(s) 347, 738, 1681, 1742, 1747, 1804
Hin1I GRCGYC 1 cut(s) 1731
Hin1II CATG 7 cut(s) 170, 263, 821, 1131, 1266, 1401, 1514
Hin6I GCGC 6 cut(s) 345, 736, 1679, 1740, 1745, 1802
HinP1I GCGC 6 cut(s) 345, 736, 1679, 1740, 1745, 1802
HincII GTYRAC 4 cut(s) 102, 626, 1735, 1855
HindII GTYRAC 4 cut(s) 102, 626, 1735, 1855
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 7 cut(s) 163, 317, 622, 964, 1235, 1505, 1538
HpaII CCGG 4 cut(s) 53, 424, 1206, 1476
HphI GGTGA 3 cut(s) 28, 703, 890
Hpy166II GTNNAC 8 cut(s) 102, 162, 308, 626, 1010, 1280, 1735, 1855
Hpy188I TCNGA 5 cut(s) 66, 197, 267, 827, 1710
Hpy188III TCNNGA 7 cut(s) 22, 53, 260, 1206, 1476, 1585, 1808
Hpy8I GTNNAC 8 cut(s) 102, 162, 308, 626, 1010, 1280, 1735, 1855
Hpy99I CGWCG 2 cut(s) 526, 1755
HpyAV CCTTC 6 cut(s) 150, 164, 508, 668, 682, 869
HpyCH4III ACNGT 5 cut(s) 462, 1014, 1284, 1565, 1838
HpyCH4IV ACGT 5 cut(s) 234, 832, 1574, 1731, 1794
HpyF10VI GCNNNNNNNGC 8 cut(s) 344, 411, 452, 675, 848, 914, 1133, 1403
HpyF3I CTNAG 5 cut(s) 63, 865, 1096, 1181, 1451
HpySE526I ACGT 5 cut(s) 234, 832, 1574, 1731, 1794
Hsp92I GRCGYC 1 cut(s) 1731
Hsp92II CATG 7 cut(s) 170, 263, 821, 1131, 1266, 1401, 1514
HspAI GCGC 6 cut(s) 345, 736, 1679, 1740, 1745, 1802
Kpn2I TCCGGA 3 cut(s) 52, 1205, 1475
KpnI GGTACC 3 cut(s) 176, 1031, 1301
Ksp22I TGATCA 1 cut(s) 262
LguI GCTCTTC 3 cut(s) 591, 1110, 1380
LmnI GCTCC 2 cut(s) 330, 587
Lsp1109I GCAGC 6 cut(s) 577, 620, 740, 1087, 1357, 1729
LweI GCATC 2 cut(s) 265, 1053
MaeII ACGT 5 cut(s) 234, 832, 1574, 1731, 1794
MaeIII GTNAC 3 cut(s) 999, 1570, 1609
MboII GAAGA 8 cut(s) 243, 404, 608, 893, 1097, 1367, 1675, 1733
MflI RGATCY 4 cut(s) 206, 778, 813, 822
MhlI GDGCHC 1 cut(s) 894
MlsI TGGCCA 1 cut(s) 1310
MluCI AATT 2 cut(s) 1090, 1360
MluNI TGGCCA 1 cut(s) 1310
MlyI GAGTC 4 cut(s) 157, 631, 1229, 1499
MmeI TCCRAC 3 cut(s) 220, 850, 1037
Mox20I TGGCCA 1 cut(s) 1310
Mph1103I ATGCAT 3 cut(s) 340, 1129, 1399
MroI TCCGGA 3 cut(s) 52, 1205, 1475
MscI TGGCCA 1 cut(s) 1310
MseI TTAA 3 cut(s) 246, 401, 798
MslI CAYNNNNRTG 1 cut(s) 1550
Msp20I TGGCCA 1 cut(s) 1310
MspA1I CMGCKG 1 cut(s) 1100
MspCI CTTAAG 2 cut(s) 245, 400
MspI CCGG 4 cut(s) 53, 424, 1206, 1476
MspR9I CCNGG 8 cut(s) 424, 425, 706, 766, 945, 972, 1086, 1356
MteI GCGCNGCGC 1 cut(s) 1743
MvaI CCWGG 6 cut(s) 706, 766, 945, 972, 1086, 1356
MvnI CGCG 3 cut(s) 345, 521, 1740
MwoI GCNNNNNNNGC 8 cut(s) 344, 411, 452, 675, 848, 914, 1133, 1403
NciI CCSGG 2 cut(s) 424, 425
NheI GCTAGC 3 cut(s) 184, 1132, 1402
NlaIII CATG 7 cut(s) 170, 263, 821, 1131, 1266, 1401, 1514
NlaIV GGNNCC 8 cut(s) 174, 815, 1029, 1150, 1187, 1299, 1420, 1457
NmeAIII GCCGAG 1 cut(s) 1346
NmuCI GTSAC 1 cut(s) 999
NsiI ATGCAT 3 cut(s) 340, 1129, 1399
NspI RCATGY 2 cut(s) 1266, 1514
PagI TCATGA 1 cut(s) 259
PaqCI CACCTGC 1 cut(s) 76
PceI AGGCCT 1 cut(s) 748
PciI ACATGT 1 cut(s) 1262
PciSI GCTCTTC 3 cut(s) 591, 1110, 1380
PfeI GAWTC 3 cut(s) 317, 964, 1538
PfoI TCCNGGA 2 cut(s) 704, 970
PkrI GCNGC 7 cut(s) 592, 635, 730, 907, 1102, 1372, 1744
Ple19I CGATCG 1 cut(s) 304
PleI GAGTC 4 cut(s) 157, 630, 1229, 1499
PmaCI CACGTG 1 cut(s) 235
PmlI CACGTG 1 cut(s) 235
PpsI GAGTC 4 cut(s) 157, 630, 1229, 1499
Ppu21I YACGTR 1 cut(s) 235
PscI ACATGT 1 cut(s) 1262
Psp1406I AACGTT 1 cut(s) 1574
Psp6I CCWGG 6 cut(s) 704, 764, 943, 970, 1084, 1354
PspCI CACGTG 1 cut(s) 235
PspEI GGTNACC 1 cut(s) 1609
PspGI CCWGG 6 cut(s) 704, 764, 943, 970, 1084, 1354
PspN4I GGNNCC 8 cut(s) 174, 815, 1029, 1150, 1187, 1299, 1420, 1457
PspPI GGNCC 5 cut(s) 107, 577, 1185, 1455, 1834
PstI CTGCAG 2 cut(s) 87, 844
PsuI RGATCY 4 cut(s) 206, 778, 813, 822
PvuI CGATCG 1 cut(s) 304
PvuII CAGCTG 1 cut(s) 1100
RseI CAYNNNNRTG 1 cut(s) 1550
SalI GTCGAC 1 cut(s) 1853
SapI GCTCTTC 3 cut(s) 591, 1110, 1380
SaqAI TTAA 3 cut(s) 246, 401, 798
SatI GCNGC 7 cut(s) 591, 634, 729, 906, 1101, 1371, 1743
Sau96I GGNCC 5 cut(s) 107, 577, 1185, 1455, 1834
ScaI AGTACT 3 cut(s) 509, 1142, 1412
SchI GAGTC 4 cut(s) 157, 631, 1229, 1499
ScrFI CCNGG 8 cut(s) 424, 425, 706, 766, 945, 972, 1086, 1356
SduI GDGCHC 1 cut(s) 894
SfaNI GCATC 2 cut(s) 265, 1053
SfcI CTRYAG 2 cut(s) 83, 840
SinI GGWCC 2 cut(s) 577, 1834
SmaI CCCGGG 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 1550
SmlI CTYRAG 4 cut(s) 111, 245, 276, 400
SmoI CTYRAG 4 cut(s) 111, 245, 276, 400
SpeI ACTAGT 1 cut(s) 1685
Sse9I AATT 2 cut(s) 1090, 1360
SseBI AGGCCT 1 cut(s) 748
SsiI CCGC 7 cut(s) 519, 546, 782, 906, 1025, 1295, 1738
SspI AATATT 1 cut(s) 716
StuI AGGCCT 1 cut(s) 748
StyD4I CCNGG 8 cut(s) 422, 423, 704, 764, 943, 970, 1084, 1354
StyI CCWWGG 1 cut(s) 679
TaaI ACNGT 5 cut(s) 462, 1014, 1284, 1565, 1838
TaiI ACGT 5 cut(s) 237, 835, 1577, 1734, 1797
TaqI TCGA 6 cut(s) 45, 120, 442, 1257, 1779, 1854
TasI AATT 2 cut(s) 1090, 1360
TatI WGTACW 5 cut(s) 507, 1009, 1140, 1279, 1410
TauI GCSGC 1 cut(s) 908
TfiI GAWTC 3 cut(s) 317, 964, 1538
Tru1I TTAA 3 cut(s) 246, 401, 798
Tru9I TTAA 3 cut(s) 246, 401, 798
TscAI CASTG 7 cut(s) 164, 327, 465, 1038, 1278, 1308, 1665
TseFI GTSAC 1 cut(s) 999
TseI GCWGC 6 cut(s) 590, 633, 728, 1100, 1370, 1742
Tsp45I GTSAC 1 cut(s) 999
TspDTI ATGAA 2 cut(s) 1103, 1373
TspGWI ACGGA 2 cut(s) 120, 1613
TspMI CCCGGG 1 cut(s) 423
TspRI CASTG 7 cut(s) 164, 327, 465, 1038, 1278, 1308, 1665
Vha464I CTTAAG 2 cut(s) 245, 400
VpaK11BI GGWCC 2 cut(s) 577, 1834
XceI RCATGY 2 cut(s) 1266, 1514
XmaI CCCGGG 1 cut(s) 423
XmiI GTMKAC 1 cut(s) 1854
ZraI GACGTC 1 cut(s) 1732
ZrmI AGTACT 3 cut(s) 509, 1142, 1412
Zsp2I ATGCAT 3 cut(s) 340, 1129, 1399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.