FvH4_4g15162

Galactose oxidase, central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000179
Physical Location & Seq
Reverse (-)
18742510 .. 18743166
657 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15162.t1

Sequence Viewer

Length: 657 bp
ATGACTGCAAAGGTGAACCCTCCAAGGCTTTTAAACAATGTGGCATTCTCTGAAGTCACCCGTGGTGGAGTTGATGTCATGGACACTAACCAGGGTCTCCGAAAGATTCGTATGCAGGCCGCCACTCTAATTTGTGAAGAAATTGAAGACATCATAACGAAGCACTCGTCAAGGACCATTCTTTCTAAGAAGAAAGACCTTGACGAGATGGTGGCCGAACTTAAATGTTATAGGGTTGATCCTTCATCAGTAAAAGACAAGGTAGAGAGCTTGATGACTTGTGTTACTCAATACAACGTGGCAAGGCTTGCATGCACACATAAAGCTACTCCAGGCACATGTGATCAACGTTTGTCTCATACGGAGACTGAAATTGCAAAGTCGATCGAACTCCGTCAAACCGACCTTGGTCAACGTCAAGCTGCAATTGAGTCCTTGGAGAATTTGAAGAAGGAGCAACAGAAGTTGGAACAGAAAATAACTTCCCTAGACGCAAGTCTTCTACTTCATGACAAAAAACTTGTTGATTTAGAGAAGCAAAAAGTCCAAATCAAGGAGATTCCAAAGTTGACTATTAAGGAGCTTGAGGAAGTAAAGAGGTTGAGAGATGATTTTGAAAAGCAGCGCAACAGCTTCAAAGGCCTAACTTGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04212 ko05168 map04212 map05168
Pfam Domains
Protein Families
Kelch_3 Kelch_4 Kelch_5

Protein Analysis

219

Amino Acids

24.94

Weight (kDa)

8.71

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 120
AclI AACGTT 1 cut(s) 349
AclWI GGATC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 1 cut(s) 442
AcuI CTGAAG 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 553
AflIII ACRYGT 1 cut(s) 338
AgsI TTSAA 4 cut(s) 146, 448, 617, 637
AjnI CCWGG 2 cut(s) 90, 331
AluBI AGCT 5 cut(s) 270, 326, 422, 583, 633
AluI AGCT 5 cut(s) 270, 326, 422, 583, 633
Alw26I GTCTC 3 cut(s) 101, 359, 360
AlwI GGATC 1 cut(s) 233
AoxI GGCC 3 cut(s) 117, 213, 640
ApeKI GCWGC 2 cut(s) 422, 622
ApoI RAATTY 1 cut(s) 442
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AspLEI GCGC 1 cut(s) 627
AspS9I GGNCC 1 cut(s) 174
AsuHPI GGTGA 2 cut(s) 25, 49
AvaII GGWCC 1 cut(s) 174
BbsI GAAGAC 2 cut(s) 153, 491
BbvI GCAGC 2 cut(s) 409, 634
BccI CCATC 1 cut(s) 202
BciT130I CCWGG 2 cut(s) 92, 333
BclI TGATCA 1 cut(s) 343
BcoDI GTCTC 3 cut(s) 101, 359, 360
BfaI CTAG 1 cut(s) 488
BisI GCNGC 3 cut(s) 120, 423, 623
BlsI GCNGC 3 cut(s) 121, 424, 624
Bme1390I CCNGG 2 cut(s) 92, 333
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 174
BmrFI CCNGG 2 cut(s) 92, 333
BoxI GACNNNNGTC 2 cut(s) 408, 495
BpiI GAAGAC 2 cut(s) 153, 491
BpmI CTGGAG 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 605
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 5 cut(s) 23, 61, 91, 406, 435
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bsc4I CCNNNNNNNGG 1 cut(s) 553
BseBI CCWGG 2 cut(s) 92, 333
BseDI CCNNGG 5 cut(s) 23, 61, 91, 406, 435
BseGI GGATG 1 cut(s) 657
BseLI CCNNNNNNNGG 1 cut(s) 553
BseXI GCAGC 2 cut(s) 409, 634
Bsh1285I CGRYCG 1 cut(s) 387
BshFI GGCC 3 cut(s) 119, 215, 642
BsiEI CGRYCG 1 cut(s) 387
BslI CCNNNNNNNGG 1 cut(s) 553
BsmAI GTCTC 3 cut(s) 101, 359, 360
BsmI GAATGC 1 cut(s) 44
BsnI GGCC 3 cut(s) 119, 215, 642
Bso31I GGTCTC 1 cut(s) 101
Bsp143I GATC 3 cut(s) 238, 343, 384
BspACI CCGC 1 cut(s) 120
BspANI GGCC 3 cut(s) 119, 215, 642
BspHI TCATGA 1 cut(s) 508
BspPI GGATC 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 101
BssECI CCNNGG 5 cut(s) 23, 61, 91, 406, 435
BssMI GATC 3 cut(s) 238, 343, 384
BssT1I CCWWGG 3 cut(s) 23, 406, 435
Bst2UI CCWGG 2 cut(s) 92, 333
BstAPI GCANNNNNTGC 1 cut(s) 308
BstC8I GCNNGC 3 cut(s) 117, 309, 313
BstDEI CTNAG 1 cut(s) 186
BstDSI CCRYGG 1 cut(s) 61
BstF5I GGATG 1 cut(s) 657
BstHHI GCGC 1 cut(s) 627
BstKTI GATC 3 cut(s) 241, 346, 387
BstMAI GTCTC 3 cut(s) 101, 359, 360
BstMBI GATC 3 cut(s) 238, 343, 384
BstMCI CGRYCG 1 cut(s) 387
BstMWI GCNNNNNNNGC 2 cut(s) 308, 639
BstNI CCWGG 2 cut(s) 92, 333
BstNSI RCATGY 2 cut(s) 315, 342
BstPAI GACNNNNGTC 2 cut(s) 408, 495
BstSCI CCNGG 2 cut(s) 90, 331
BstV1I GCAGC 2 cut(s) 409, 634
BstV2I GAAGAC 2 cut(s) 153, 491
BsuRI GGCC 3 cut(s) 119, 215, 642
BtgI CCRYGG 1 cut(s) 61
BtsCI GGATG 1 cut(s) 657
Cac8I GCNNGC 3 cut(s) 117, 309, 313
CciI TCATGA 1 cut(s) 508
CfoI GCGC 1 cut(s) 627
Cfr13I GGNCC 1 cut(s) 174
CseI GACGC 1 cut(s) 500
CviAII CATG 4 cut(s) 79, 312, 339, 509
DdeI CTNAG 1 cut(s) 186
DpnI GATC 3 cut(s) 240, 345, 386
DpnII GATC 3 cut(s) 238, 343, 384
DraI TTTAAA 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 213
Eco130I CCWWGG 3 cut(s) 23, 406, 435
Eco147I AGGCCT 1 cut(s) 642
Eco31I GGTCTC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 72
EcoRII CCWGG 2 cut(s) 90, 331
EcoT14I CCWWGG 3 cut(s) 23, 406, 435
ErhI CCWWGG 3 cut(s) 23, 406, 435
FaeI CATG 4 cut(s) 82, 315, 342, 512
FaiI YATR 9 cut(s) 80, 113, 155, 231, 313, 321, 340, 360, 510
FatI CATG 4 cut(s) 78, 311, 338, 508
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 3 cut(s) 120, 423, 623
Fsp4HI GCNGC 3 cut(s) 120, 423, 623
FspBI CTAG 1 cut(s) 488
GlaI GCGC 1 cut(s) 626
GluI GCNGC 3 cut(s) 120, 423, 623
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 3 cut(s) 119, 215, 642
HgaI GACGC 1 cut(s) 500
HhaI GCGC 1 cut(s) 627
Hin1II CATG 4 cut(s) 82, 315, 342, 512
Hin6I GCGC 1 cut(s) 625
HinP1I GCGC 1 cut(s) 625
HincII GTYRAC 2 cut(s) 413, 570
HindII GTYRAC 2 cut(s) 413, 570
HinfI GANTC 3 cut(s) 106, 431, 559
HphI GGTGA 2 cut(s) 25, 49
Hpy166II GTNNAC 3 cut(s) 16, 413, 570
Hpy188I TCNGA 2 cut(s) 52, 101
Hpy188III TCNNGA 1 cut(s) 509
Hpy8I GTNNAC 3 cut(s) 16, 413, 570
HpyAV CCTTC 2 cut(s) 252, 445
HpyCH4IV ACGT 3 cut(s) 297, 349, 415
HpyCH4V TGCA 6 cut(s) 8, 115, 311, 315, 377, 425
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 639
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 3 cut(s) 297, 349, 415
Hsp92II CATG 4 cut(s) 82, 315, 342, 512
HspAI GCGC 1 cut(s) 625
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 3 cut(s) 238, 343, 384
LmnI GCTCC 2 cut(s) 454, 580
LpnPI CCDG 5 cut(s) 77, 101, 104, 318, 345
Lsp1109I GCAGC 2 cut(s) 409, 634
MaeI CTAG 1 cut(s) 488
MaeII ACGT 3 cut(s) 297, 349, 415
MaeIII GTNAC 2 cut(s) 55, 283
MalI GATC 3 cut(s) 240, 345, 386
MboI GATC 3 cut(s) 238, 343, 384
MboII GAAGA 5 cut(s) 149, 158, 202, 460, 491
MfeI CAATTG 1 cut(s) 426
MluCI AATT 5 cut(s) 129, 141, 372, 426, 442
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 1 cut(s) 447
MnlI CCTC 3 cut(s) 30, 580, 591
MseI TTAA 3 cut(s) 32, 222, 576
MspR9I CCNGG 2 cut(s) 92, 333
MunI CAATTG 1 cut(s) 426
Mva1269I GAATGC 1 cut(s) 44
MvaI CCWGG 2 cut(s) 92, 333
MwoI GCNNNNNNNGC 2 cut(s) 308, 639
NdeII GATC 3 cut(s) 238, 343, 384
NlaIII CATG 4 cut(s) 82, 315, 342, 512
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 2 cut(s) 315, 342
PaeI GCATGC 1 cut(s) 315
PagI TCATGA 1 cut(s) 508
PceI AGGCCT 1 cut(s) 642
PciI ACATGT 1 cut(s) 338
PcsI WCGNNNNNNNCGW 1 cut(s) 164
PctI GAATGC 1 cut(s) 44
PfeI GAWTC 2 cut(s) 106, 559
PkrI GCNGC 3 cut(s) 121, 424, 624
Ple19I CGATCG 1 cut(s) 387
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
PscI ACATGT 1 cut(s) 338
PshAI GACNNNNGTC 2 cut(s) 408, 495
Psp1406I AACGTT 1 cut(s) 349
Psp6I CCWGG 2 cut(s) 90, 331
PspGI CCWGG 2 cut(s) 90, 331
PspPI GGNCC 1 cut(s) 174
PvuI CGATCG 1 cut(s) 387
SaqAI TTAA 3 cut(s) 32, 222, 576
SatI GCNGC 3 cut(s) 120, 423, 623
Sau3AI GATC 3 cut(s) 238, 343, 384
Sau96I GGNCC 1 cut(s) 174
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 2 cut(s) 92, 333
SinI GGWCC 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
SphI GCATGC 1 cut(s) 315
Sse9I AATT 5 cut(s) 129, 141, 372, 426, 442
SseBI AGGCCT 1 cut(s) 642
SsiI CCGC 1 cut(s) 120
SspMI CTAG 1 cut(s) 488
StuI AGGCCT 1 cut(s) 642
StyD4I CCNGG 2 cut(s) 90, 331
StyI CCWWGG 3 cut(s) 23, 406, 435
TaiI ACGT 3 cut(s) 300, 352, 418
TaqI TCGA 2 cut(s) 383, 387
TasI AATT 5 cut(s) 129, 141, 372, 426, 442
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 2 cut(s) 106, 559
Tru1I TTAA 3 cut(s) 32, 222, 576
Tru9I TTAA 3 cut(s) 32, 222, 576
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 422, 622
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 234, 497
TspGWI ACGGA 2 cut(s) 377, 383
VpaK11BI GGWCC 1 cut(s) 174
XapI RAATTY 1 cut(s) 442
XceI RCATGY 2 cut(s) 315, 342
XspI CTAG 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.