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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 478 |
| AciI | CCGC | 3 cut(s) | 94, 331, 478 |
| AclWI | GGATC | 1 cut(s) | 215 |
| AcsI | RAATTY | 2 cut(s) | 87, 573 |
| AcuI | CTGAAG | 1 cut(s) | 411 |
| AfaI | GTAC | 1 cut(s) | 321 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 31, 213 |
| AgsI | TTSAA | 6 cut(s) | 172, 185, 377, 579, 619, 661 |
| AluBI | AGCT | 6 cut(s) | 253, 311, 383, 448, 490, 527 |
| AluI | AGCT | 6 cut(s) | 253, 311, 383, 448, 490, 527 |
| AlwI | GGATC | 1 cut(s) | 215 |
| Ama87I | CYCGRG | 1 cut(s) | 638 |
| ApeKI | GCWGC | 1 cut(s) | 197 |
| ApoI | RAATTY | 2 cut(s) | 87, 573 |
| AsuHPI | GGTGA | 1 cut(s) | 219 |
| AvaI | CYCGRG | 1 cut(s) | 638 |
| BbvI | GCAGC | 1 cut(s) | 184 |
| BccI | CCATC | 1 cut(s) | 253 |
| BfaI | CTAG | 1 cut(s) | 419 |
| BisI | GCNGC | 2 cut(s) | 94, 198 |
| BlsI | GCNGC | 2 cut(s) | 95, 199 |
| BmeT110I | CYCGRG | 1 cut(s) | 638 |
| BmsI | GCATC | 3 cut(s) | 55, 334, 595 |
| BpmI | CTGGAG | 1 cut(s) | 297 |
| BsaJI | CCNNGG | 1 cut(s) | 30 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 31, 213 |
| Bse3DI | GCAATG | 1 cut(s) | 192 |
| BseDI | CCNNGG | 1 cut(s) | 30 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 31, 213 |
| BseMI | GCAATG | 1 cut(s) | 192 |
| BseRI | GAGGAG | 1 cut(s) | 488 |
| BseXI | GCAGC | 1 cut(s) | 184 |
| BsiHKCI | CYCGRG | 1 cut(s) | 638 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 31, 213 |
| BsoBI | CYCGRG | 1 cut(s) | 638 |
| Bsp143I | GATC | 2 cut(s) | 220, 547 |
| BspACI | CCGC | 3 cut(s) | 94, 331, 478 |
| BspHI | TCATGA | 1 cut(s) | 255 |
| BspPI | GGATC | 1 cut(s) | 215 |
| BsrBI | CCGCTC | 1 cut(s) | 478 |
| BsrDI | GCAATG | 1 cut(s) | 192 |
| BssECI | CCNNGG | 1 cut(s) | 30 |
| BssMI | GATC | 2 cut(s) | 220, 547 |
| BssT1I | CCWWGG | 1 cut(s) | 30 |
| Bst6I | CTCTTC | 1 cut(s) | 430 |
| BstC8I | GCNNGC | 1 cut(s) | 295 |
| BstKTI | GATC | 2 cut(s) | 223, 550 |
| BstMBI | GATC | 2 cut(s) | 220, 547 |
| BstV1I | GCAGC | 1 cut(s) | 184 |
| BtsIMutI | CAGTG | 1 cut(s) | 653 |
| Cac8I | GCNNGC | 1 cut(s) | 295 |
| CciI | TCATGA | 1 cut(s) | 255 |
| Csp6I | GTAC | 1 cut(s) | 320 |
| CviAII | CATG | 2 cut(s) | 256, 283 |
| CviQI | GTAC | 1 cut(s) | 320 |
| DpnI | GATC | 2 cut(s) | 222, 549 |
| DpnII | GATC | 2 cut(s) | 220, 547 |
| Eam1104I | CTCTTC | 1 cut(s) | 430 |
| EarI | CTCTTC | 1 cut(s) | 430 |
| Eco130I | CCWWGG | 1 cut(s) | 30 |
| Eco32I | GATATC | 1 cut(s) | 21 |
| Eco57I | CTGAAG | 1 cut(s) | 411 |
| Eco88I | CYCGRG | 1 cut(s) | 638 |
| EcoRV | GATATC | 1 cut(s) | 21 |
| EcoT14I | CCWWGG | 1 cut(s) | 30 |
| ErhI | CCWWGG | 1 cut(s) | 30 |
| FaeI | CATG | 2 cut(s) | 259, 286 |
| FaiI | YATR | 8 cut(s) | 75, 152, 213, 257, 284, 399, 503, 534 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 165, 197 |
| FatI | CATG | 2 cut(s) | 255, 282 |
| Fnu4HI | GCNGC | 2 cut(s) | 94, 198 |
| Fsp4HI | GCNGC | 2 cut(s) | 94, 198 |
| FspBI | CTAG | 1 cut(s) | 419 |
| GluI | GCNGC | 2 cut(s) | 94, 198 |
| GsuI | CTGGAG | 1 cut(s) | 297 |
| Hin1II | CATG | 2 cut(s) | 259, 286 |
| HincII | GTYRAC | 1 cut(s) | 247 |
| HindII | GTYRAC | 1 cut(s) | 247 |
| HindIII | AAGCTT | 1 cut(s) | 488 |
| HinfI | GANTC | 6 cut(s) | 145, 401, 433, 583, 622, 632 |
| HphI | GGTGA | 1 cut(s) | 219 |
| Hpy166II | GTNNAC | 1 cut(s) | 247 |
| Hpy188I | TCNGA | 3 cut(s) | 46, 430, 627 |
| Hpy188III | TCNNGA | 4 cut(s) | 256, 314, 356, 507 |
| Hpy8I | GTNNAC | 1 cut(s) | 247 |
| HpyAV | CCTTC | 2 cut(s) | 170, 234 |
| HpyCH4V | TGCA | 3 cut(s) | 68, 286, 651 |
| Hsp92II | CATG | 2 cut(s) | 259, 286 |
| Kzo9I | GATC | 2 cut(s) | 220, 547 |
| LmnI | GCTCC | 2 cut(s) | 316, 475 |
| LpnPI | CCDG | 3 cut(s) | 285, 327, 492 |
| Lsp1109I | GCAGC | 1 cut(s) | 184 |
| LweI | GCATC | 3 cut(s) | 55, 334, 595 |
| MaeI | CTAG | 1 cut(s) | 419 |
| MaeIII | GTNAC | 2 cut(s) | 138, 392 |
| MalI | GATC | 2 cut(s) | 222, 549 |
| MbiI | CCGCTC | 1 cut(s) | 478 |
| MboI | GATC | 2 cut(s) | 220, 547 |
| MboII | GAAGA | 4 cut(s) | 316, 365, 417, 631 |
| MluCI | AATT | 4 cut(s) | 87, 271, 277, 573 |
| MlyI | GAGTC | 1 cut(s) | 577 |
| MmeI | TCCRAC | 1 cut(s) | 96 |
| MnlI | CCTC | 6 cut(s) | 28, 310, 433, 466, 634, 669 |
| MseI | TTAA | 3 cut(s) | 233, 369, 518 |
| MslI | CAYNNNNRTG | 1 cut(s) | 537 |
| MspA1I | CMGCKG | 2 cut(s) | 331, 383 |
| NdeII | GATC | 2 cut(s) | 220, 547 |
| NlaIII | CATG | 2 cut(s) | 259, 286 |
| NmuCI | GTSAC | 1 cut(s) | 392 |
| PaeR7I | CTCGAG | 1 cut(s) | 638 |
| PagI | TCATGA | 1 cut(s) | 255 |
| PfeI | GAWTC | 5 cut(s) | 145, 401, 433, 622, 632 |
| PkrI | GCNGC | 2 cut(s) | 95, 199 |
| PleI | GAGTC | 1 cut(s) | 577 |
| PpsI | GAGTC | 1 cut(s) | 577 |
| PspXI | VCTCGAGB | 1 cut(s) | 638 |
| PvuII | CAGCTG | 1 cut(s) | 383 |
| RsaI | GTAC | 1 cut(s) | 321 |
| RsaNI | GTAC | 1 cut(s) | 320 |
| RseI | CAYNNNNRTG | 1 cut(s) | 537 |
| SaqAI | TTAA | 3 cut(s) | 233, 369, 518 |
| SatI | GCNGC | 2 cut(s) | 94, 198 |
| Sau3AI | GATC | 2 cut(s) | 220, 547 |
| SchI | GAGTC | 1 cut(s) | 577 |
| SfaNI | GCATC | 3 cut(s) | 55, 334, 595 |
| Sfr274I | CTCGAG | 1 cut(s) | 638 |
| SlaI | CTCGAG | 1 cut(s) | 638 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 537 |
| SmlI | CTYRAG | 1 cut(s) | 638 |
| SmoI | CTYRAG | 1 cut(s) | 638 |
| Sse9I | AATT | 4 cut(s) | 87, 271, 277, 573 |
| SsiI | CCGC | 3 cut(s) | 94, 331, 478 |
| SspI | AATATT | 1 cut(s) | 61 |
| SspMI | CTAG | 1 cut(s) | 419 |
| StyI | CCWWGG | 1 cut(s) | 30 |
| TaqI | TCGA | 3 cut(s) | 107, 570, 639 |
| TasI | AATT | 4 cut(s) | 87, 271, 277, 573 |
| TauI | GCSGC | 1 cut(s) | 96 |
| TfiI | GAWTC | 5 cut(s) | 145, 401, 433, 622, 632 |
| Tru1I | TTAA | 3 cut(s) | 233, 369, 518 |
| Tru9I | TTAA | 3 cut(s) | 233, 369, 518 |
| TscAI | CASTG | 1 cut(s) | 653 |
| TseFI | GTSAC | 1 cut(s) | 392 |
| TseI | GCWGC | 1 cut(s) | 197 |
| Tsp45I | GTSAC | 1 cut(s) | 392 |
| TspDTI | ATGAA | 2 cut(s) | 30, 414 |
| TspRI | CASTG | 1 cut(s) | 653 |
| XapI | RAATTY | 2 cut(s) | 87, 573 |
| XhoI | CTCGAG | 1 cut(s) | 638 |
| XspI | CTAG | 1 cut(s) | 419 |