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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 104 |
| AciI | CCGC | 1 cut(s) | 315 |
| AcuI | CTGAAG | 2 cut(s) | 104, 189 |
| AfaI | GTAC | 2 cut(s) | 420, 452 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 104 |
| AflII | CTTAAG | 1 cut(s) | 110 |
| AflIII | ACRYGT | 1 cut(s) | 415 |
| AgsI | TTSAA | 3 cut(s) | 247, 392, 506 |
| AluBI | AGCT | 2 cut(s) | 292, 320 |
| AluI | AGCT | 2 cut(s) | 292, 320 |
| Alw21I | GWGCWC | 1 cut(s) | 227 |
| Alw44I | GTGCAC | 1 cut(s) | 223 |
| AoxI | GGCC | 3 cut(s) | 106, 403, 433 |
| ApaLI | GTGCAC | 1 cut(s) | 223 |
| AspLEI | GCGC | 1 cut(s) | 118 |
| AspS9I | GGNCC | 2 cut(s) | 403, 433 |
| AsuHPI | GGTGA | 2 cut(s) | 28, 311 |
| BaeGI | GKGCMC | 1 cut(s) | 227 |
| BauI | CACGAG | 1 cut(s) | 264 |
| BbsI | GAAGAC | 1 cut(s) | 156 |
| Bbv12I | GWGCWC | 1 cut(s) | 227 |
| BccI | CCATC | 2 cut(s) | 41, 487 |
| BceAI | ACGGC | 1 cut(s) | 431 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 245, 279 |
| BclI | TGATCA | 1 cut(s) | 301 |
| BfaI | CTAG | 1 cut(s) | 426 |
| BfoI | RGCGCY | 1 cut(s) | 119 |
| BfrI | CTTAAG | 1 cut(s) | 110 |
| BmgT120I | GGNCC | 2 cut(s) | 403, 433 |
| BmsI | GCATC | 1 cut(s) | 464 |
| BpiI | GAAGAC | 1 cut(s) | 156 |
| BpmI | CTGGAG | 1 cut(s) | 372 |
| Bsa29I | ATCGAT | 1 cut(s) | 472 |
| BsaBI | GATNNNNATC | 2 cut(s) | 239, 478 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 345, 375 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 104 |
| Bse1I | ACTGG | 2 cut(s) | 109, 355 |
| Bse8I | GATNNNNATC | 2 cut(s) | 239, 478 |
| BseCI | ATCGAT | 1 cut(s) | 472 |
| BseGI | GGATG | 2 cut(s) | 274, 306 |
| BseJI | GATNNNNATC | 2 cut(s) | 239, 478 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 104 |
| BseMII | CTCAG | 1 cut(s) | 221 |
| BseNI | ACTGG | 2 cut(s) | 109, 355 |
| BseSI | GKGCMC | 1 cut(s) | 227 |
| BshFI | GGCC | 3 cut(s) | 108, 405, 435 |
| BshVI | ATCGAT | 1 cut(s) | 472 |
| BsiHKAI | GWGCWC | 1 cut(s) | 227 |
| BsiSI | CCGG | 1 cut(s) | 278 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 104 |
| BsnI | GGCC | 3 cut(s) | 108, 405, 435 |
| Bsp1286I | GDGCHC | 1 cut(s) | 227 |
| Bsp143I | GATC | 4 cut(s) | 200, 301, 407, 473 |
| BspACI | CCGC | 1 cut(s) | 315 |
| BspANI | GGCC | 3 cut(s) | 108, 405, 435 |
| BspCNI | CTCAG | 1 cut(s) | 222 |
| BspDI | ATCGAT | 1 cut(s) | 472 |
| BspQI | GCTCTTC | 1 cut(s) | 129 |
| BspTI | CTTAAG | 1 cut(s) | 110 |
| BsrI | ACTGG | 2 cut(s) | 109, 355 |
| BssMI | GATC | 4 cut(s) | 200, 301, 407, 473 |
| BssSI | CACGAG | 1 cut(s) | 264 |
| Bst2BI | CACGAG | 1 cut(s) | 264 |
| Bst6I | CTCTTC | 1 cut(s) | 129 |
| BstAFI | CTTAAG | 1 cut(s) | 110 |
| BstC8I | GCNNGC | 2 cut(s) | 120, 223 |
| BstDEI | CTNAG | 1 cut(s) | 230 |
| BstF5I | GGATG | 2 cut(s) | 274, 306 |
| BstH2I | RGCGCY | 1 cut(s) | 119 |
| BstHHI | GCGC | 1 cut(s) | 118 |
| BstKTI | GATC | 4 cut(s) | 203, 304, 410, 476 |
| BstMBI | GATC | 4 cut(s) | 200, 301, 407, 473 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 452 |
| BstNSI | RCATGY | 1 cut(s) | 419 |
| BstSLI | GKGCMC | 1 cut(s) | 227 |
| BstV2I | GAAGAC | 1 cut(s) | 156 |
| Bsu15I | ATCGAT | 1 cut(s) | 472 |
| BsuRI | GGCC | 3 cut(s) | 108, 405, 435 |
| BsuTUI | ATCGAT | 1 cut(s) | 472 |
| BtsCI | GGATG | 2 cut(s) | 274, 306 |
| BtsIMutI | CAGTG | 2 cut(s) | 98, 227 |
| Cac8I | GCNNGC | 2 cut(s) | 120, 223 |
| CfoI | GCGC | 1 cut(s) | 118 |
| Cfr13I | GGNCC | 2 cut(s) | 403, 433 |
| ClaI | ATCGAT | 1 cut(s) | 472 |
| Csp6I | GTAC | 2 cut(s) | 419, 451 |
| CviAII | CATG | 6 cut(s) | 13, 145, 260, 416, 443, 495 |
| CviJI | RGCY | 8 cut(s) | 108, 281, 292, 320, 326, 388, 405, 435 |
| CviKI_1 | RGCY | 8 cut(s) | 108, 281, 292, 320, 326, 388, 405, 435 |
| CviQI | GTAC | 2 cut(s) | 419, 451 |
| DdeI | CTNAG | 1 cut(s) | 230 |
| DpnI | GATC | 4 cut(s) | 202, 303, 409, 475 |
| DpnII | GATC | 4 cut(s) | 200, 301, 407, 473 |
| Eam1104I | CTCTTC | 1 cut(s) | 129 |
| EarI | CTCTTC | 1 cut(s) | 129 |
| Eco57I | CTGAAG | 2 cut(s) | 104, 189 |
| EcoT22I | ATGCAT | 1 cut(s) | 150 |
| FaeI | CATG | 6 cut(s) | 16, 148, 263, 419, 446, 498 |
| FaiI | YATR | 8 cut(s) | 14, 146, 150, 261, 323, 417, 444, 496 |
| FatI | CATG | 6 cut(s) | 12, 144, 259, 415, 442, 494 |
| FbaI | TGATCA | 1 cut(s) | 301 |
| FokI | GGATG | 2 cut(s) | 261, 293 |
| FspBI | CTAG | 1 cut(s) | 426 |
| GlaI | GCGC | 1 cut(s) | 117 |
| GsuI | CTGGAG | 1 cut(s) | 372 |
| HaeII | RGCGCY | 1 cut(s) | 119 |
| HaeIII | GGCC | 3 cut(s) | 108, 405, 435 |
| HapII | CCGG | 1 cut(s) | 278 |
| HhaI | GCGC | 1 cut(s) | 118 |
| Hin1II | CATG | 6 cut(s) | 16, 148, 263, 419, 446, 498 |
| Hin6I | GCGC | 1 cut(s) | 116 |
| HinP1I | GCGC | 1 cut(s) | 116 |
| HincII | GTYRAC | 1 cut(s) | 345 |
| HindII | GTYRAC | 1 cut(s) | 345 |
| HindIII | AAGCTT | 1 cut(s) | 290 |
| HinfI | GANTC | 3 cut(s) | 59, 235, 371 |
| HpaI | GTTAAC | 1 cut(s) | 345 |
| HpaII | CCGG | 1 cut(s) | 278 |
| HphI | GGTGA | 2 cut(s) | 28, 311 |
| Hpy166II | GTNNAC | 3 cut(s) | 225, 345, 451 |
| Hpy188I | TCNGA | 1 cut(s) | 169 |
| Hpy188III | TCNNGA | 2 cut(s) | 244, 266 |
| Hpy8I | GTNNAC | 3 cut(s) | 225, 345, 451 |
| HpyAV | CCTTC | 4 cut(s) | 43, 211, 261, 501 |
| HpyCH4V | TGCA | 2 cut(s) | 148, 225 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 452 |
| HpyF3I | CTNAG | 1 cut(s) | 230 |
| Hsp92II | CATG | 6 cut(s) | 16, 148, 263, 419, 446, 498 |
| HspAI | GCGC | 1 cut(s) | 116 |
| Ksp22I | TGATCA | 1 cut(s) | 301 |
| KspAI | GTTAAC | 1 cut(s) | 345 |
| Kzo9I | GATC | 4 cut(s) | 200, 301, 407, 473 |
| LguI | GCTCTTC | 1 cut(s) | 129 |
| LmnI | GCTCC | 1 cut(s) | 317 |
| LpnPI | CCDG | 4 cut(s) | 90, 291, 336, 372 |
| LweI | GCATC | 1 cut(s) | 464 |
| MaeI | CTAG | 1 cut(s) | 426 |
| MaeIII | GTNAC | 1 cut(s) | 266 |
| MalI | GATC | 4 cut(s) | 202, 303, 409, 475 |
| MboI | GATC | 4 cut(s) | 200, 301, 407, 473 |
| MboII | GAAGA | 7 cut(s) | 97, 116, 156, 223, 226, 404, 494 |
| MhlI | GDGCHC | 1 cut(s) | 227 |
| MlyI | GAGTC | 1 cut(s) | 380 |
| MnlI | CCTC | 2 cut(s) | 175, 225 |
| Mph1103I | ATGCAT | 1 cut(s) | 150 |
| MseI | TTAA | 5 cut(s) | 21, 111, 153, 288, 344 |
| MslI | CAYNNNNRTG | 1 cut(s) | 264 |
| MspCI | CTTAAG | 1 cut(s) | 110 |
| MspI | CCGG | 1 cut(s) | 278 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 452 |
| NdeII | GATC | 4 cut(s) | 200, 301, 407, 473 |
| NlaIII | CATG | 6 cut(s) | 16, 148, 263, 419, 446, 498 |
| NmuCI | GTSAC | 1 cut(s) | 266 |
| NsiI | ATGCAT | 1 cut(s) | 150 |
| NspI | RCATGY | 1 cut(s) | 419 |
| PciI | ACATGT | 1 cut(s) | 415 |
| PciSI | GCTCTTC | 1 cut(s) | 129 |
| PfeI | GAWTC | 2 cut(s) | 59, 235 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 104 |
| PleI | GAGTC | 1 cut(s) | 379 |
| PpsI | GAGTC | 1 cut(s) | 379 |
| PscI | ACATGT | 1 cut(s) | 415 |
| PspPI | GGNCC | 2 cut(s) | 403, 433 |
| RsaI | GTAC | 2 cut(s) | 420, 452 |
| RsaNI | GTAC | 2 cut(s) | 419, 451 |
| RseI | CAYNNNNRTG | 1 cut(s) | 264 |
| SapI | GCTCTTC | 1 cut(s) | 129 |
| SaqAI | TTAA | 5 cut(s) | 21, 111, 153, 288, 344 |
| Sau3AI | GATC | 4 cut(s) | 200, 301, 407, 473 |
| Sau96I | GGNCC | 2 cut(s) | 403, 433 |
| SchI | GAGTC | 1 cut(s) | 380 |
| SduI | GDGCHC | 1 cut(s) | 227 |
| SetI | ASST | 4 cut(s) | 186, 294, 322, 361 |
| SfaNI | GCATC | 1 cut(s) | 464 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 264 |
| SmlI | CTYRAG | 1 cut(s) | 110 |
| SmoI | CTYRAG | 1 cut(s) | 110 |
| SsiI | CCGC | 1 cut(s) | 315 |
| SspMI | CTAG | 1 cut(s) | 426 |
| TaqI | TCGA | 2 cut(s) | 199, 472 |
| TatI | WGTACW | 1 cut(s) | 418 |
| TfiI | GAWTC | 2 cut(s) | 59, 235 |
| Tru1I | TTAA | 5 cut(s) | 21, 111, 153, 288, 344 |
| Tru9I | TTAA | 5 cut(s) | 21, 111, 153, 288, 344 |
| TscAI | CASTG | 2 cut(s) | 105, 234 |
| TseFI | GTSAC | 1 cut(s) | 266 |
| Tsp45I | GTSAC | 1 cut(s) | 266 |
| TspDTI | ATGAA | 1 cut(s) | 483 |
| TspGWI | ACGGA | 1 cut(s) | 299 |
| TspRI | CASTG | 2 cut(s) | 105, 234 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 104 |
| Vha464I | CTTAAG | 1 cut(s) | 110 |
| VneI | GTGCAC | 1 cut(s) | 223 |
| XceI | RCATGY | 1 cut(s) | 419 |
| XspI | CTAG | 1 cut(s) | 426 |
| Zsp2I | ATGCAT | 1 cut(s) | 150 |