pycom12g09590

spliceosomal complex assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000179
Physical Location & Seq
Forward (+)
11489698 .. 11491437
1740 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g09590.3

Sequence Viewer

Length: 1509 bp
ATGCATTGGGAGTCTTGTACCCGTGCATGTACAAATGCTTCTATCATCCTGCCGGCCAAAGACGAGTTCAAGAGTAGTCCAGTGACCCATGCTTACGTAAGTTGGTGGTCAAAGGTACATTATGAGAACTTGGGGATGGCAAATGGTACCAATTCTTCTCATTCACGCCTTGATGTATCGAGGGAGGGTTGTTCTGTGGTTCCTACGCAACTGATATCTTTTGATTGCGCGAGTGCTGCTACTTTGCAAGACAGACCAGTGGTTCTAGTCCCTCAATGCCCACGCTTGTCTTCTCAACATCTGGATGTATCTGAAGAGGCCGGTGATGAAGTTGATTCGCATGAAGATGGACTTGTTTTGCAGCAGCGTCAACAAGTTTTAAATAAGCGACGACTTGAAGGCGCTCAGGTCGATAGCGATGTCAATTTTCGTCATAAGAAGAAAGAAGTGTTTAGGCTCCCTCAACTCGATGGCAGTGTGTCGGTTGAGAAAGATGTTGGGCTTTCTTGTTCTTTTGACTTGGCGACCACAGGTATTCACTCTTATACGGAGATGCTATTTGGAGGCGACCTACCGACAGGCGGGGAGATCGGGGATCCACCTAGTACAGAGCTTGTCCCAAATCCGTCAAGTTTCCCAAGTTTGCCGTGTGTAGGTAGAGGTATGCAAGATCCCGTCATGCGTTCTATACCTTTGCCAGCTAGCTCTGAGATCTCTCTAAGAGGGCCAAACCTTAATGGTACTGAGCAGCTTATTCATCACATCAATCTTCGTGCGGCAATGGACATCAAGAGCCATATTGAGAAGAGGATTTCAAAATGCCCGTTGAAGGACCTTGCGTTGCTTGAAGAGGATTTATCGAAGCTTATTTCTGCAATTGCCAATCTTAACGTTGATTCTTCATCTTTGAAGATCAAGATCGCCGAACTTATGGCCGCTTCCACTGAGTATTCTTCCTTGCGTGCTATTTCCTCGAAGAAGTTGAGTCCAGATGTTAGAGCTCACCAGCTTGCATATCAAGCCACAGAAACTTCTTTAGCTTCCGTCCACGTTCGTCTAGATACGTTGATACGAGAGCAAGAACAGTTGGGCATCGAAACATCACGACTTAAAAGTGTTCTCGGGGAGCGGGCAGCTACATTTTCTCAATGCCAAGAGGAGATTTCACGCCTAGAACAAGAGAAAGACATGGCAATGGAGTTGCCCATCTTGTCTCTTACCGAGGTAGAGACTTTGAAGACTTTGGAAGGCTTGCTTGAAGATCGCCTCCGCAGTTTTAGGGACATAGTTTTCGAAAATAAAGTGTTTGCATTCTTGAATTTGCTTTTTATTCTCCAAAGTGTTTGTGTTTTTGTTGATGATGTGACTGTACTTGAAGTTTTGAAGTTTCAAGTTGCCTATGTACCCTTGGTTGAGGAGGGATCAAGTCATGGCGTAGTTCAAATGAGTGATGTTTGCCGTACACAGTTTATGCTCTTGCGGGCCAGGAGCGTAGTGCGTTTGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

503

Amino Acids

55.59

Weight (kDa)

5.41

Isoelectric Point (pI)

54.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 146
AccB1I GGYRCC 1 cut(s) 146
AccBSI CCGCTC 1 cut(s) 1129
AccII CGCG 1 cut(s) 230
AciI CCGC 6 cut(s) 582, 776, 936, 1129, 1270, 1480
AclI AACGTT 1 cut(s) 891
AclWI GGATC 4 cut(s) 590, 603, 665, 1429
AcoI YGGCCR 2 cut(s) 54, 933
AcsI RAATTY 1 cut(s) 1318
AcuI CTGAAG 1 cut(s) 333
AfaI GTAC 9 cut(s) 19, 31, 117, 148, 607, 742, 1371, 1404, 1462
AfiI CCNNNNNNNGG 3 cut(s) 581, 653, 829
AjnI CCWGG 1 cut(s) 1484
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AluBI AGCT 9 cut(s) 613, 701, 705, 751, 865, 1001, 1009, 1040, 1136
AluI AGCT 9 cut(s) 613, 701, 705, 751, 865, 1001, 1009, 1040, 1136
Alw21I GWGCWC 1 cut(s) 1003
Alw26I GTCTC 2 cut(s) 1218, 1223
AlwI GGATC 4 cut(s) 590, 603, 665, 1429
Ama87I CYCGRG 1 cut(s) 1121
AoxI GGCC 5 cut(s) 54, 318, 725, 933, 1482
ApeKI GCWGC 5 cut(s) 236, 361, 364, 748, 1133
ApoI RAATTY 1 cut(s) 1318
ArsI GACNNNNNNTTYG 2 cut(s) 1274, 1306
Asp718I GGTACC 1 cut(s) 146
AspLEI GCGC 2 cut(s) 230, 404
AspS9I GGNCC 3 cut(s) 725, 832, 1482
AsuHPI GGTGA 2 cut(s) 335, 995
AsuII TTCGAA 1 cut(s) 1293
AsuNHI GCTAGC 1 cut(s) 701
AvaI CYCGRG 1 cut(s) 1121
AvaII GGWCC 1 cut(s) 832
BamHI GGATCC 1 cut(s) 595
BanI GGYRCC 1 cut(s) 146
BanII GRGCYC 1 cut(s) 1003
BarI GAAGNNNNNNTAC 4 cut(s) 22, 54, 139, 171
BbsI GAAGAC 2 cut(s) 282, 1244
Bbv12I GWGCWC 1 cut(s) 1003
BbvI GCAGC 5 cut(s) 223, 373, 376, 760, 1145
BccI CCATC 4 cut(s) 130, 341, 464, 1214
BceAI ACGGC 2 cut(s) 631, 1443
BciT130I CCWGG 1 cut(s) 1486
BcoDI GTCTC 2 cut(s) 1218, 1223
BfaI CTAG 5 cut(s) 266, 603, 702, 1058, 1172
BfoI RGCGCY 1 cut(s) 405
BglII AGATCT 1 cut(s) 711
BisI GCNGC 7 cut(s) 237, 362, 365, 749, 777, 936, 1134
BlsI GCNGC 7 cut(s) 238, 363, 366, 750, 778, 937, 1135
Bme1390I CCNGG 1 cut(s) 1486
Bme18I GGWCC 1 cut(s) 832
BmeT110I CYCGRG 1 cut(s) 1121
BmgT120I GGNCC 3 cut(s) 725, 832, 1482
BmiI GGNNCC 4 cut(s) 148, 201, 458, 597
BmrFI CCNGG 1 cut(s) 1486
BmsI GCATC 2 cut(s) 543, 1101
BmtI GCTAGC 1 cut(s) 705
BpiI GAAGAC 2 cut(s) 282, 1244
Bpu10I CCTNAGC 1 cut(s) 405
Bpu14I TTCGAA 1 cut(s) 1293
BsaAI YACGTR 1 cut(s) 97
BsaBI GATNNNNATC 1 cut(s) 917
BsaJI CCNNGG 2 cut(s) 1221, 1407
Bsc4I CCNNNNNNNGG 3 cut(s) 581, 653, 829
Bse118I RCCGGY 2 cut(s) 52, 320
Bse1I ACTGG 2 cut(s) 80, 257
Bse3DI GCAATG 2 cut(s) 786, 1200
Bse8I GATNNNNATC 1 cut(s) 917
BseBI CCWGG 1 cut(s) 1486
BseDI CCNNGG 2 cut(s) 1221, 1407
BseGI GGATG 3 cut(s) 45, 141, 310
BseJI GATNNNNATC 1 cut(s) 917
BseLI CCNNNNNNNGG 3 cut(s) 581, 653, 829
BseMI GCAATG 2 cut(s) 786, 1200
BseMII CTCAG 4 cut(s) 419, 699, 735, 936
BseNI ACTGG 2 cut(s) 80, 257
BseRI GAGGAG 2 cut(s) 1172, 1430
BseXI GCAGC 5 cut(s) 223, 373, 376, 760, 1145
Bsh1236I CGCG 1 cut(s) 230
BshFI GGCC 5 cut(s) 56, 320, 727, 935, 1484
BshNI GGYRCC 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 1003
BsiHKCI CYCGRG 1 cut(s) 1121
BsiSI CCGG 2 cut(s) 53, 321
BslFI GGGAC 3 cut(s) 254, 602, 1295
BslI CCNNNNNNNGG 3 cut(s) 581, 653, 829
BsmAI GTCTC 2 cut(s) 1218, 1223
BsmFI GGGAC 3 cut(s) 254, 602, 1295
BsmI GAATGC 1 cut(s) 1310
BsnI GGCC 5 cut(s) 56, 320, 727, 935, 1484
BsoBI CYCGRG 1 cut(s) 1121
Bsp119I TTCGAA 1 cut(s) 1293
Bsp1286I GDGCHC 1 cut(s) 1003
Bsp1407I TGTACA 1 cut(s) 29
Bsp143I GATC 8 cut(s) 588, 595, 670, 711, 912, 918, 1261, 1421
BspACI CCGC 6 cut(s) 582, 776, 936, 1129, 1270, 1480
BspANI GGCC 5 cut(s) 56, 320, 727, 935, 1484
BspCNI CTCAG 4 cut(s) 418, 700, 736, 937
BspFNI CGCG 1 cut(s) 230
BspLI GGNNCC 4 cut(s) 148, 201, 458, 597
BspOI GCTAGC 1 cut(s) 705
BspPI GGATC 4 cut(s) 590, 603, 665, 1429
BspT104I TTCGAA 1 cut(s) 1293
BspT107I GGYRCC 1 cut(s) 146
BsrBI CCGCTC 1 cut(s) 1129
BsrDI GCAATG 2 cut(s) 786, 1200
BsrFI RCCGGY 2 cut(s) 52, 320
BsrGI TGTACA 1 cut(s) 29
BsrI ACTGG 2 cut(s) 80, 257
BssAI RCCGGY 2 cut(s) 52, 320
BssECI CCNNGG 2 cut(s) 1221, 1407
BssMI GATC 8 cut(s) 588, 595, 670, 711, 912, 918, 1261, 1421
BssT1I CCWWGG 1 cut(s) 1407
Bst2UI CCWGG 1 cut(s) 1486
Bst4CI ACNGT 3 cut(s) 1086, 1369, 1467
Bst6I CTCTTC 3 cut(s) 309, 800, 843
BstAUI TGTACA 1 cut(s) 29
BstBAI YACGTR 1 cut(s) 97
BstBI TTCGAA 1 cut(s) 1293
BstC8I GCNNGC 8 cut(s) 54, 699, 703, 963, 1011, 1131, 1253, 1482
BstDEI CTNAG 5 cut(s) 405, 708, 719, 744, 945
BstF5I GGATG 3 cut(s) 45, 141, 310
BstFNI CGCG 1 cut(s) 230
BstH2I RGCGCY 1 cut(s) 405
BstHHI GCGC 2 cut(s) 230, 404
BstKTI GATC 8 cut(s) 591, 598, 673, 714, 915, 921, 1264, 1424
BstMAI GTCTC 2 cut(s) 1218, 1223
BstMBI GATC 8 cut(s) 588, 595, 670, 711, 912, 918, 1261, 1421
BstMWI GCNNNNNNNGC 2 cut(s) 236, 1019
BstNI CCWGG 1 cut(s) 1486
BstNSI RCATGY 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 1484
BstSNI TACGTA 1 cut(s) 97
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 5 cut(s) 223, 373, 376, 760, 1145
BstV2I GAAGAC 2 cut(s) 282, 1244
BstX2I RGATCY 3 cut(s) 595, 670, 711
BstYI RGATCY 3 cut(s) 595, 670, 711
BsuRI GGCC 5 cut(s) 56, 320, 727, 935, 1484
BtgZI GCGATG 1 cut(s) 432
BtsCI GGATG 3 cut(s) 45, 141, 310
BtsI GCAGTG 1 cut(s) 481
BtsIMutI CAGTG 4 cut(s) 87, 264, 481, 942
Cac8I GCNNGC 8 cut(s) 54, 699, 703, 963, 1011, 1131, 1253, 1482
CfoI GCGC 2 cut(s) 230, 404
Cfr10I RCCGGY 2 cut(s) 52, 320
Cfr13I GGNCC 3 cut(s) 725, 832, 1482
CseI GACGC 1 cut(s) 356
Csp6I GTAC 9 cut(s) 18, 30, 116, 147, 606, 741, 1370, 1403, 1461
CviAII CATG 6 cut(s) 27, 89, 341, 679, 1189, 1430
CviQI GTAC 9 cut(s) 18, 30, 116, 147, 606, 741, 1370, 1403, 1461
DdeI CTNAG 5 cut(s) 405, 708, 719, 744, 945
DpnI GATC 8 cut(s) 590, 597, 672, 713, 914, 920, 1263, 1423
DpnII GATC 8 cut(s) 588, 595, 670, 711, 912, 918, 1261, 1421
DraI TTTAAA 1 cut(s) 381
EaeI YGGCCR 2 cut(s) 54, 933
Eam1104I CTCTTC 3 cut(s) 309, 800, 843
EarI CTCTTC 3 cut(s) 309, 800, 843
Ecl136II GAGCTC 1 cut(s) 1001
Eco105I TACGTA 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 1407
Eco24I GRGCYC 1 cut(s) 1003
Eco32I GATATC 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 832
Eco53kI GAGCTC 1 cut(s) 1001
Eco57I CTGAAG 1 cut(s) 333
Eco88I CYCGRG 1 cut(s) 1121
EcoICRI GAGCTC 1 cut(s) 1001
EcoO109I RGGNCCY 1 cut(s) 832
EcoRII CCWGG 1 cut(s) 1484
EcoRV GATATC 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 1407
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 1003
ErhI CCWWGG 1 cut(s) 1407
FaeI CATG 6 cut(s) 30, 92, 344, 682, 1192, 1433
FalI AAGNNNNNCTT 4 cut(s) 336, 368, 1239, 1271
FaqI GGGAC 3 cut(s) 254, 602, 1295
FatI CATG 6 cut(s) 26, 88, 340, 678, 1188, 1429
FauI CCCGC 3 cut(s) 575, 1122, 1473
Fnu4HI GCNGC 7 cut(s) 237, 362, 365, 749, 777, 936, 1134
FokI GGATG 3 cut(s) 32, 148, 317
FriOI GRGCYC 1 cut(s) 1003
Fsp4HI GCNGC 7 cut(s) 237, 362, 365, 749, 777, 936, 1134
FspBI CTAG 5 cut(s) 266, 603, 702, 1058, 1172
GlaI GCGC 2 cut(s) 229, 403
GluI GCNGC 7 cut(s) 237, 362, 365, 749, 777, 936, 1134
HaeII RGCGCY 1 cut(s) 405
HaeIII GGCC 5 cut(s) 56, 320, 727, 935, 1484
HapII CCGG 2 cut(s) 53, 321
HgaI GACGC 1 cut(s) 356
HhaI GCGC 2 cut(s) 230, 404
Hin1II CATG 6 cut(s) 30, 92, 344, 682, 1192, 1433
Hin6I GCGC 2 cut(s) 228, 402
HinP1I GCGC 2 cut(s) 228, 402
HincII GTYRAC 1 cut(s) 371
HindII GTYRAC 1 cut(s) 371
HindIII AAGCTT 1 cut(s) 863
HinfI GANTC 4 cut(s) 11, 335, 896, 985
HpaII CCGG 2 cut(s) 53, 321
HphI GGTGA 2 cut(s) 335, 995
Hpy166II GTNNAC 3 cut(s) 371, 1048, 1463
Hpy188I TCNGA 2 cut(s) 313, 709
Hpy188III TCNNGA 8 cut(s) 70, 302, 790, 916, 989, 1058, 1104, 1315
Hpy8I GTNNAC 3 cut(s) 371, 1048, 1463
Hpy99I CGWCG 1 cut(s) 393
HpyAV CCTTC 3 cut(s) 392, 823, 1241
HpyCH4III ACNGT 3 cut(s) 1086, 1369, 1467
HpyCH4IV ACGT 4 cut(s) 96, 891, 1050, 1064
HpyCH4V TGCA 8 cut(s) 4, 26, 247, 361, 667, 875, 1013, 1310
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 1019
HpyF3I CTNAG 5 cut(s) 405, 708, 719, 744, 945
HpySE526I ACGT 4 cut(s) 96, 891, 1050, 1064
Hsp92II CATG 6 cut(s) 30, 92, 344, 682, 1192, 1433
HspAI GCGC 2 cut(s) 228, 402
KpnI GGTACC 1 cut(s) 150
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Kzo9I GATC 8 cut(s) 588, 595, 670, 711, 912, 918, 1261, 1421
LmnI GCTCC 3 cut(s) 462, 1126, 1488
Lsp1109I GCAGC 5 cut(s) 223, 373, 376, 760, 1145
LweI GCATC 2 cut(s) 543, 1101
MaeI CTAG 5 cut(s) 266, 603, 702, 1058, 1172
MaeII ACGT 4 cut(s) 96, 891, 1050, 1064
MaeIII GTNAC 2 cut(s) 82, 1363
MalI GATC 8 cut(s) 590, 597, 672, 713, 914, 920, 1263, 1423
MbiI CCGCTC 1 cut(s) 1129
MboI GATC 8 cut(s) 588, 595, 670, 711, 912, 918, 1261, 1421
MfeI CAATTG 1 cut(s) 876
MflI RGATCY 3 cut(s) 595, 670, 711
MhlI GDGCHC 1 cut(s) 1003
MluCI AATT 4 cut(s) 151, 424, 876, 1318
MlyI GAGTC 2 cut(s) 20, 994
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 52
MseI TTAA 4 cut(s) 380, 735, 888, 1110
MslI CAYNNNNRTG 3 cut(s) 303, 345, 1193
MspI CCGG 2 cut(s) 53, 321
MspR9I CCNGG 1 cut(s) 1486
MunI CAATTG 1 cut(s) 876
Mva1269I GAATGC 1 cut(s) 1310
MvaI CCWGG 1 cut(s) 1486
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 2 cut(s) 236, 1019
NaeI GCCGGC 1 cut(s) 54
NdeII GATC 8 cut(s) 588, 595, 670, 711, 912, 918, 1261, 1421
NgoMIV GCCGGC 1 cut(s) 52
NheI GCTAGC 1 cut(s) 701
NlaIII CATG 6 cut(s) 30, 92, 344, 682, 1192, 1433
NlaIV GGNNCC 4 cut(s) 148, 201, 458, 597
NmuCI GTSAC 2 cut(s) 82, 1363
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 30
NspV TTCGAA 1 cut(s) 1293
PctI GAATGC 1 cut(s) 1310
PdiI GCCGGC 1 cut(s) 54
PfeI GAWTC 2 cut(s) 335, 896
PkrI GCNGC 7 cut(s) 238, 363, 366, 750, 778, 937, 1135
PleI GAGTC 2 cut(s) 19, 993
PpsI GAGTC 2 cut(s) 19, 993
Ppu21I YACGTR 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 832
Psp124BI GAGCTC 1 cut(s) 1003
Psp1406I AACGTT 1 cut(s) 891
Psp5II RGGWCCY 1 cut(s) 832
Psp6I CCWGG 1 cut(s) 1484
PspGI CCWGG 1 cut(s) 1484
PspN4I GGNNCC 4 cut(s) 148, 201, 458, 597
PspPI GGNCC 3 cut(s) 725, 832, 1482
PspPPI RGGWCCY 1 cut(s) 832
PsuI RGATCY 3 cut(s) 595, 670, 711
RsaI GTAC 9 cut(s) 19, 31, 117, 148, 607, 742, 1371, 1404, 1462
RsaNI GTAC 9 cut(s) 18, 30, 116, 147, 606, 741, 1370, 1403, 1461
RseI CAYNNNNRTG 3 cut(s) 303, 345, 1193
SacI GAGCTC 1 cut(s) 1003
SaqAI TTAA 4 cut(s) 380, 735, 888, 1110
SatI GCNGC 7 cut(s) 237, 362, 365, 749, 777, 936, 1134
Sau3AI GATC 8 cut(s) 588, 595, 670, 711, 912, 918, 1261, 1421
Sau96I GGNCC 3 cut(s) 725, 832, 1482
SchI GAGTC 2 cut(s) 20, 994
ScrFI CCNGG 1 cut(s) 1486
SduI GDGCHC 1 cut(s) 1003
SfaNI GCATC 2 cut(s) 543, 1101
SfuI TTCGAA 1 cut(s) 1293
SinI GGWCC 1 cut(s) 832
SmiMI CAYNNNNRTG 3 cut(s) 303, 345, 1193
SnaBI TACGTA 1 cut(s) 97
Sse9I AATT 4 cut(s) 151, 424, 876, 1318
SsiI CCGC 6 cut(s) 582, 776, 936, 1129, 1270, 1480
SspMI CTAG 5 cut(s) 266, 603, 702, 1058, 1172
SstI GAGCTC 1 cut(s) 1003
StyD4I CCNGG 1 cut(s) 1484
StyI CCWWGG 1 cut(s) 1407
TaaI ACNGT 3 cut(s) 1086, 1369, 1467
TaiI ACGT 4 cut(s) 99, 894, 1053, 1067
TaqI TCGA 7 cut(s) 179, 411, 468, 860, 974, 1095, 1293
TasI AATT 4 cut(s) 151, 424, 876, 1318
TatI WGTACW 3 cut(s) 29, 605, 1369
TauI GCSGC 2 cut(s) 779, 938
TfiI GAWTC 2 cut(s) 335, 896
Tru1I TTAA 4 cut(s) 380, 735, 888, 1110
Tru9I TTAA 4 cut(s) 380, 735, 888, 1110
TscAI CASTG 4 cut(s) 87, 264, 481, 949
TseFI GTSAC 2 cut(s) 82, 1363
TseI GCWGC 5 cut(s) 236, 361, 364, 748, 1133
Tsp45I GTSAC 2 cut(s) 82, 1363
TspDTI ATGAA 4 cut(s) 342, 357, 746, 891
TspGWI ACGGA 3 cut(s) 563, 615, 1033
TspRI CASTG 4 cut(s) 87, 264, 481, 949
VpaK11BI GGWCC 1 cut(s) 832
XapI RAATTY 1 cut(s) 1318
XbaI TCTAGA 1 cut(s) 1057
XceI RCATGY 1 cut(s) 30
XspI CTAG 5 cut(s) 266, 603, 702, 1058, 1172
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.