Rmu_sc0003652.1_g000006

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003652.1
OG0000179
Physical Location & Seq
Reverse (-)
16987 .. 20086
3100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003652.1_g000006.1.cds

Sequence Viewer

Length: 2484 bp
atggctttcttcaagtgcttcaagaaagggacaatcaccattctcgaggatccggaggacgctcaaagtgatggaactactctgcaagtgcacccatcgttgactgggcctcaagcaatcgatgtccctccttatgacccttcagctcacatcctccagtggactcatgtagtacctcgccagctggctatgttccgacaaccgagatctggcagagaccaacaaaactcgcacgtgctgttgcttaagtcttcgcatcatgatcagaacactcctcaagtcccattcacgcttctcaacgatcgtgtacgcaatgattcagtgaagtggagcaatgcatttcgcgcaaatggaggcttctcttacacagagttctactgggaatgggtagaagatatcttaagcaggaatggcaagcttacccgggagactggcctctatcgagctatattcgcctcactgttcagctatgaccgtgttgcacctgtcatacgggccttctgcgagtactggtgtcccgcgacgaataccctccacacttctagcggggaaatgtttatctccctctgggatttggaccaacttggaggtttacccattgccggacgattctatgatgaggttgtcccagctgctgaagagctttctgcaacgagcaaagggagtcaacagaactgtcgttatttgtttcttgcctaccataagctctgcaaagaaagccaagggcagaaggtgaaaataacttcctggatacgatattggtatagaggagctttgcgctataagaggcctccaaacaaaagcaccaggaacaaaagagatccgcccccgaatgtgtttaatccatctggcaggatccatgagattcgacaacgcacttctgcagacctcgcggtctttgaggacttaggcgtagaaggtgaagatatagagtccacctacttggccacttttcttgcttgttggttgtgcttgtttgttttacctggagacaacaccggcttgattcgtccaggagtattcaaagtcgccagcaaaatgtcacagggtgtacagttttgcctagcggtaccagtgctggccagcatctatcagggtttgaacgagatttctgtttccagcgatccaggtaattgctcggctgctcttccttttcattatatttatgcatggctagcagagtacttcggcacccactttcagtctccacttcccaacgacctaaggccccgtatggttcgcttctccggagaactttcagctaggcattttggagactcacaggctctttctttgttcgacacatgtgataatgtgaagatgggtgtatttgccagggtattttcagagagcagagtgattatcaatcgcagtaacatctcccatttagacttgatatatcttatcagccttcgatccggccttaagaatgacattcgcaccggcgtactggctctgatttatttgcattgggattcttgcactagaatggacactaactgtgaggtaacgttgccgatccagagtgctatcacggagcatatggttacccgagactatgttgattggtggtctaaagtgtatcattctacaccagtgaagacaacgagagtagcgcctactagtagaaccctgcacaagcctctgaaagcaaaagaagacaaggacatcaaccgcgctgcgcctcgtcgccagaatgtgattgcttgtgaagtcgaatgtagcaccaacgtccctgctcttcctgatagggcttcgctcccagataaggaccgtcaggctcatccagtggacattctagaagacgatggagactctttagattctcacatcgctttcatccgtccacttaagctgaaaagacctgtcatcaaagaaagaaggcgtagtggaagcagcggtagcaatgatagtgaagtgcactttaagcgtcgaaaaactgacaccagccttggccctacttattgtgatcccaatgctgagttcactctgaatactgactttcttggtgacatctcaacttcttcgcaaccgatgctgcagcgaaatgagggtgcagagattgatggtcgttcactttggggaaatgatgacgcctctttagaccctatacgtgttccttctgcagcggaacttgaggcttacgctttacccacgaaaggaaaatccaatgcaaagaatgactcacagcaaattgaccctacaggtccacttaccatggtgcatcctcctaagcctctgaacaccatagccttttctgaggcctctcttggtggagctgttattatagctgccagtcaaagacttcgtgatattcgtcaacaagctgctactgcagagaagaagcttgtcgacctaaaaaaaaaggagattcaaatccaagagacccccgaggtgaccgctgcagagcttgagacaacaaaatcattgcgagatacttttgagaaccaccgcaatagcttcaagggtttgacttgggtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

827

Amino Acids

93.01

Weight (kDa)

7.85

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 893
Acc65I GGTACC 1 cut(s) 1069
AccB1I GGYRCC 2 cut(s) 1069, 1190
AccI GTMKAC 1 cut(s) 2352
AccII CGCG 4 cut(s) 345, 521, 893, 1677
AccIII TCCGGA 2 cut(s) 52, 1247
AclI AACGTT 1 cut(s) 1511
AclWI GGATC 9 cut(s) 44, 57, 815, 850, 863, 1118, 1410, 1513, 1964
AcoI YGGCCR 2 cut(s) 945, 1080
AcuI CTGAAG 2 cut(s) 126, 657
AcvI CACGTG 1 cut(s) 235
AcyI GRCGYC 1 cut(s) 2094
AdeI CACNNNGTG 1 cut(s) 1049
AfaI GTAC 7 cut(s) 174, 309, 509, 1053, 1071, 1184, 1449
AfiI CCNNNNNNNGG 4 cut(s) 209, 602, 1768, 2159
AflII CTTAAG 4 cut(s) 245, 400, 1424, 1850
AflIII ACRYGT 2 cut(s) 1304, 2113
AgsI TTSAA 6 cut(s) 13, 22, 1024, 1102, 2375, 2464
AhlI ACTAGT 1 cut(s) 1622
AjnI CCWGG 6 cut(s) 746, 806, 985, 1012, 1126, 1334
AjuI GAANNNNNNNTTGG 2 cut(s) 1967, 1999
Alw21I GWGCWC 2 cut(s) 93, 1923
Alw26I GTCTC 9 cut(s) 210, 422, 984, 1209, 1269, 1548, 1806, 2378, 2408
Alw44I GTGCAC 2 cut(s) 89, 1919
AlwI GGATC 9 cut(s) 44, 57, 815, 850, 863, 1118, 1410, 1513, 1964
AlwNI CAGNNNCTG 1 cut(s) 635
Ama87I CYCGRG 4 cut(s) 44, 423, 1551, 2390
Aor13HI TCCGGA 2 cut(s) 52, 1247
ApaLI GTGCAC 2 cut(s) 89, 1919
Asp718I GGTACC 1 cut(s) 1069
AspLEI GCGC 5 cut(s) 347, 780, 1618, 1679, 1684
AspS9I GGNCC 7 cut(s) 107, 495, 577, 1227, 1771, 1955, 2207
AsuC2I CCSGG 2 cut(s) 424, 425
AsuHPI GGTGA 5 cut(s) 28, 745, 932, 2021, 2407
AsuNHI GCTAGC 1 cut(s) 1174
AvaI CYCGRG 4 cut(s) 44, 423, 1551, 2390
AvaII GGWCC 3 cut(s) 577, 1771, 2207
AxyI CCTNAGG 1 cut(s) 1223
BaeGI GKGCMC 2 cut(s) 93, 1923
BalI TGGCCA 2 cut(s) 947, 1082
BamHI GGATCC 2 cut(s) 49, 855
BanI GGYRCC 2 cut(s) 1069, 1190
BbrPI CACGTG 1 cut(s) 235
BbsI GAAGAC 4 cut(s) 243, 1607, 1665, 1809
Bbv12I GWGCWC 2 cut(s) 93, 1923
BccI CCATC 6 cut(s) 65, 103, 853, 1315, 1802, 2060
BciT130I CCWGG 6 cut(s) 748, 808, 987, 1014, 1128, 1336
BciVI GTATCC 1 cut(s) 744
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 2 cut(s) 424, 425
BcoDI GTCTC 9 cut(s) 210, 422, 984, 1209, 1269, 1548, 1806, 2378, 2408
BcuI ACTAGT 1 cut(s) 1622
BfaI CTAG 7 cut(s) 543, 1064, 1175, 1263, 1485, 1623, 1799
BfmI CTRYAG 6 cut(s) 882, 2039, 2124, 2202, 2334, 2403
BfoI RGCGCY 1 cut(s) 1619
BfrI CTTAAG 4 cut(s) 245, 400, 1424, 1850
BfuI GTATCC 1 cut(s) 744
BglII AGATCT 1 cut(s) 206
BmcAI AGTACT 2 cut(s) 509, 1184
Bme1390I CCNGG 8 cut(s) 424, 425, 748, 808, 987, 1014, 1128, 1336
Bme18I GGWCC 3 cut(s) 577, 1771, 2207
BmeT110I CYCGRG 4 cut(s) 44, 423, 1551, 2390
BmgT120I GGNCC 7 cut(s) 107, 495, 577, 1227, 1771, 1955, 2207
BmiI GGNNCC 5 cut(s) 51, 857, 1071, 1192, 1229
BmrFI CCNGG 8 cut(s) 424, 425, 748, 808, 987, 1014, 1128, 1336
BmrI ACTGGG 2 cut(s) 114, 388
BmsI GCATC 4 cut(s) 265, 1095, 2025, 2233
BmtI GCTAGC 1 cut(s) 1178
BmuI ACTGGG 2 cut(s) 114, 388
BpiI GAAGAC 4 cut(s) 243, 1607, 1665, 1809
BpmI CTGGAG 2 cut(s) 140, 1008
Bpu10I CCTNAGC 1 cut(s) 2232
BpuEI CTTGAG 4 cut(s) 96, 261, 2156, 2432
BpuMI CCSGG 2 cut(s) 424, 425
Bsa29I ATCGAT 1 cut(s) 120
BsaAI YACGTR 2 cut(s) 235, 2114
BsaBI GATNNNNATC 1 cut(s) 2375
BsaHI GRCGYC 1 cut(s) 2094
BsaI GGTCTC 2 cut(s) 210, 2378
BsaJI CCNNGG 6 cut(s) 423, 721, 1335, 1951, 2217, 2391
BsaWI WCCGGW 2 cut(s) 52, 1247
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 602, 1768, 2159
Bse118I RCCGGY 2 cut(s) 998, 1442
Bse21I CCTNAGG 1 cut(s) 1223
Bse3DI GCAATG 5 cut(s) 319, 340, 597, 1912, 2426
Bse8I GATNNNNATC 1 cut(s) 2375
BseAI TCCGGA 2 cut(s) 52, 1247
BseBI CCWGG 6 cut(s) 748, 808, 987, 1014, 1128, 1336
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 6 cut(s) 423, 721, 1335, 1951, 2217, 2391
BseGI GGATG 4 cut(s) 150, 1783, 1839, 2224
BseJI GATNNNNATC 1 cut(s) 2375
BseLI CCNNNNNNNGG 4 cut(s) 209, 602, 1768, 2159
BseMI GCAATG 5 cut(s) 319, 340, 597, 1912, 2426
BseMII CTCAG 2 cut(s) 1971, 2250
BseRI GAGGAG 2 cut(s) 264, 783
BseSI GKGCMC 2 cut(s) 93, 1923
BseYI CCCAGC 1 cut(s) 628
BsgI GTGCAG 2 cut(s) 1619, 2076
Bsh1236I CGCG 4 cut(s) 345, 521, 893, 1677
Bsh1285I CGRYCG 1 cut(s) 304
BshNI GGYRCC 2 cut(s) 1069, 1190
BshVI ATCGAT 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 304
BsiHKAI GWGCWC 2 cut(s) 93, 1923
BsiHKCI CYCGRG 4 cut(s) 44, 423, 1551, 2390
BsiSI CCGG 7 cut(s) 53, 424, 603, 999, 1248, 1419, 1443
BslFI GGGAC 6 cut(s) 43, 110, 266, 501, 611, 1718
BslI CCNNNNNNNGG 4 cut(s) 209, 602, 1768, 2159
BsmAI GTCTC 9 cut(s) 210, 422, 984, 1209, 1269, 1548, 1806, 2378, 2408
BsmFI GGGAC 6 cut(s) 43, 110, 266, 501, 611, 1718
Bso31I GGTCTC 2 cut(s) 210, 2378
BsoBI CYCGRG 4 cut(s) 44, 423, 1551, 2390
Bsp1286I GDGCHC 2 cut(s) 93, 1923
Bsp13I TCCGGA 2 cut(s) 52, 1247
Bsp1407I TGTACA 1 cut(s) 1051
Bsp19I CCATGG 1 cut(s) 2217
BspCNI CTCAG 2 cut(s) 1972, 2251
BspDI ATCGAT 1 cut(s) 120
BspEI TCCGGA 2 cut(s) 52, 1247
BspFNI CGCG 4 cut(s) 345, 521, 893, 1677
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 5 cut(s) 51, 857, 1071, 1192, 1229
BspMAI CTGCAG 5 cut(s) 886, 2043, 2128, 2338, 2407
BspOI GCTAGC 1 cut(s) 1178
BspPI GGATC 9 cut(s) 44, 57, 815, 850, 863, 1118, 1410, 1513, 1964
BspQI GCTCTTC 3 cut(s) 633, 1152, 1746
BspT107I GGYRCC 2 cut(s) 1069, 1190
BspTI CTTAAG 4 cut(s) 245, 400, 1424, 1850
BspTNI GGTCTC 2 cut(s) 210, 2378
BsrDI GCAATG 5 cut(s) 319, 340, 597, 1912, 2426
BsrFI RCCGGY 2 cut(s) 998, 1442
BsrGI TGTACA 1 cut(s) 1051
BssAI RCCGGY 2 cut(s) 998, 1442
BssECI CCNNGG 6 cut(s) 423, 721, 1335, 1951, 2217, 2391
BssNI GRCGYC 1 cut(s) 2094
BssT1I CCWWGG 3 cut(s) 721, 1951, 2217
Bst2UI CCWGG 6 cut(s) 748, 808, 987, 1014, 1128, 1336
Bst4CI ACNGT 6 cut(s) 462, 476, 677, 1056, 1502, 1775
Bst6I CTCTTC 3 cut(s) 633, 1152, 1746
BstACI GRCGYC 1 cut(s) 2094
BstAFI CTTAAG 4 cut(s) 245, 400, 1424, 1850
BstAPI GCANNNNNTGC 1 cut(s) 2035
BstAUI TGTACA 1 cut(s) 1051
BstBAI YACGTR 2 cut(s) 235, 2114
BstC8I GCNNGC 7 cut(s) 182, 186, 416, 1033, 1080, 1084, 1176
BstDEI CTNAG 5 cut(s) 907, 1223, 1980, 2232, 2259
BstDSI CCRYGG 1 cut(s) 2217
BstEII GGTNACC 2 cut(s) 1546, 2395
BstF5I GGATG 4 cut(s) 150, 1783, 1839, 2224
BstFNI CGCG 4 cut(s) 345, 521, 893, 1677
BstH2I RGCGCY 1 cut(s) 1619
BstHHI GCGC 5 cut(s) 347, 780, 1618, 1679, 1684
BstMAI GTCTC 9 cut(s) 210, 422, 984, 1209, 1269, 1548, 1806, 2378, 2408
BstMCI CGRYCG 1 cut(s) 304
BstNI CCWGG 6 cut(s) 748, 808, 987, 1014, 1128, 1336
BstNSI RCATGY 1 cut(s) 1308
BstPI GGTNACC 2 cut(s) 1546, 2395
BstSCI CCNGG 8 cut(s) 422, 423, 746, 806, 985, 1012, 1126, 1334
BstSFI CTRYAG 6 cut(s) 882, 2039, 2124, 2202, 2334, 2403
BstSLI GKGCMC 2 cut(s) 93, 1923
BstUI CGCG 4 cut(s) 345, 521, 893, 1677
BstV2I GAAGAC 4 cut(s) 243, 1607, 1665, 1809
BstX2I RGATCY 4 cut(s) 49, 206, 820, 855
BstXI CCANNNNNNTGG 1 cut(s) 943
BstYI RGATCY 4 cut(s) 49, 206, 820, 855
Bsu15I ATCGAT 1 cut(s) 120
Bsu36I CCTNAGG 1 cut(s) 1223
BsuI GTATCC 1 cut(s) 744
BsuTUI ATCGAT 1 cut(s) 120
BtgI CCRYGG 1 cut(s) 2217
BtgZI GCGATG 1 cut(s) 1816
BtsCI GGATG 4 cut(s) 150, 1783, 1839, 2224
BtsIMutI CAGTG 6 cut(s) 164, 327, 458, 1080, 1602, 1794
Cac8I GCNNGC 7 cut(s) 182, 186, 416, 1033, 1080, 1084, 1176
CaiI CAGNNNCTG 1 cut(s) 635
CciI TCATGA 1 cut(s) 259
CfoI GCGC 5 cut(s) 347, 780, 1618, 1679, 1684
Cfr10I RCCGGY 2 cut(s) 998, 1442
Cfr13I GGNCC 7 cut(s) 107, 495, 577, 1227, 1771, 1955, 2207
Cfr9I CCCGGG 1 cut(s) 423
ClaI ATCGAT 1 cut(s) 120
CseI GACGC 3 cut(s) 68, 1919, 2102
Csp6I GTAC 7 cut(s) 173, 308, 508, 1052, 1070, 1183, 1448
CspCI CAANNNNNGTGG 2 cut(s) 937, 972
CviAII CATG 6 cut(s) 167, 260, 860, 1170, 1305, 2218
CviQI GTAC 7 cut(s) 173, 308, 508, 1052, 1070, 1183, 1448
DdeI CTNAG 5 cut(s) 907, 1223, 1980, 2232, 2259
DraIII CACNNNGTG 1 cut(s) 1049
DrdI GACNNNNNNGTC 1 cut(s) 893
DseDI GACNNNNNNGTC 1 cut(s) 893
EaeI YGGCCR 2 cut(s) 945, 1080
Eam1104I CTCTTC 3 cut(s) 633, 1152, 1746
EarI CTCTTC 3 cut(s) 633, 1152, 1746
EciI GGCGGA 1 cut(s) 813
Eco130I CCWWGG 3 cut(s) 721, 1951, 2217
Eco147I AGGCCT 2 cut(s) 790, 2264
Eco31I GGTCTC 2 cut(s) 210, 2378
Eco32I GATATC 1 cut(s) 397
Eco47I GGWCC 3 cut(s) 577, 1771, 2207
Eco57I CTGAAG 2 cut(s) 126, 657
Eco72I CACGTG 1 cut(s) 235
Eco81I CCTNAGG 1 cut(s) 1223
Eco88I CYCGRG 4 cut(s) 44, 423, 1551, 2390
Eco91I GGTNACC 2 cut(s) 1546, 2395
EcoO109I RGGNCCY 1 cut(s) 1227
EcoO65I GGTNACC 2 cut(s) 1546, 2395
EcoRII CCWGG 6 cut(s) 746, 806, 985, 1012, 1126, 1334
EcoRV GATATC 1 cut(s) 397
EcoT14I CCWWGG 3 cut(s) 721, 1951, 2217
EcoT22I ATGCAT 2 cut(s) 340, 1171
ErhI CCWWGG 3 cut(s) 721, 1951, 2217
FaeI CATG 6 cut(s) 170, 263, 863, 1173, 1308, 2221
FaqI GGGAC 6 cut(s) 43, 110, 266, 501, 611, 1718
FatI CATG 6 cut(s) 166, 259, 859, 1169, 1304, 2217
FauI CCCGC 2 cut(s) 526, 539
FauNDI CATATG 1 cut(s) 1542
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 1 cut(s) 2352
FokI GGATG 4 cut(s) 137, 1770, 1826, 2211
FspBI CTAG 7 cut(s) 543, 1064, 1175, 1263, 1485, 1623, 1799
GlaI GCGC 5 cut(s) 346, 779, 1617, 1678, 1683
GsaI CCCAGC 1 cut(s) 632
GsuI CTGGAG 2 cut(s) 140, 1008
HaeII RGCGCY 1 cut(s) 1619
HapII CCGG 7 cut(s) 53, 424, 603, 999, 1248, 1419, 1443
HgaI GACGC 3 cut(s) 68, 1919, 2102
HhaI GCGC 5 cut(s) 347, 780, 1618, 1679, 1684
Hin1I GRCGYC 1 cut(s) 2094
Hin1II CATG 6 cut(s) 170, 263, 863, 1173, 1308, 2221
Hin6I GCGC 5 cut(s) 345, 778, 1616, 1677, 1682
HinP1I GCGC 5 cut(s) 345, 778, 1616, 1677, 1682
HincII GTYRAC 4 cut(s) 102, 668, 2321, 2353
HindII GTYRAC 4 cut(s) 102, 668, 2321, 2353
HindIII AAGCTT 2 cut(s) 416, 2345
HpaII CCGG 7 cut(s) 53, 424, 603, 999, 1248, 1419, 1443
HphI GGTGA 5 cut(s) 28, 745, 932, 2021, 2407
Hpy188I TCNGA 8 cut(s) 197, 267, 1348, 1458, 1647, 1992, 2241, 2260
Hpy188III TCNNGA 9 cut(s) 22, 44, 53, 260, 1248, 1522, 1745, 1799, 2309
Hpy99I CGWCG 3 cut(s) 526, 1692, 1935
HpyAV CCTTC 7 cut(s) 150, 508, 724, 911, 1421, 1875, 2130
HpyCH4III ACNGT 6 cut(s) 462, 476, 677, 1056, 1502, 1775
HpyCH4IV ACGT 4 cut(s) 234, 1511, 1731, 2113
HpyF3I CTNAG 5 cut(s) 907, 1223, 1980, 2232, 2259
HpySE526I ACGT 4 cut(s) 234, 1511, 1731, 2113
Hsp92I GRCGYC 1 cut(s) 2094
Hsp92II CATG 6 cut(s) 170, 263, 863, 1173, 1308, 2221
HspAI GCGC 5 cut(s) 345, 778, 1616, 1677, 1682
Kpn2I TCCGGA 2 cut(s) 52, 1247
KpnI GGTACC 1 cut(s) 1073
Ksp22I TGATCA 1 cut(s) 262
LguI GCTCTTC 3 cut(s) 633, 1152, 1746
LmnI GCTCC 5 cut(s) 330, 770, 1537, 1764, 2276
LweI GCATC 4 cut(s) 265, 1095, 2025, 2233
MaeI CTAG 7 cut(s) 543, 1064, 1175, 1263, 1485, 1623, 1799
MaeII ACGT 4 cut(s) 234, 1511, 1731, 2113
MaeIII GTNAC 6 cut(s) 1041, 1373, 1507, 1546, 2009, 2395
MflI RGATCY 4 cut(s) 49, 206, 820, 855
MhlI GDGCHC 2 cut(s) 93, 1923
MlsI TGGCCA 2 cut(s) 947, 1082
MluCI AATT 2 cut(s) 1132, 2193
MluNI TGGCCA 2 cut(s) 947, 1082
MlyI GAGTC 6 cut(s) 157, 673, 941, 1271, 1808, 2177
MmeI TCCRAC 1 cut(s) 220
Mox20I TGGCCA 2 cut(s) 947, 1082
Mph1103I ATGCAT 2 cut(s) 340, 1171
MroI TCCGGA 2 cut(s) 52, 1247
MscI TGGCCA 2 cut(s) 947, 1082
MseI TTAA 6 cut(s) 246, 401, 840, 1425, 1851, 1926
MslI CAYNNNNRTG 1 cut(s) 1487
Msp20I TGGCCA 2 cut(s) 947, 1082
MspA1I CMGCKG 5 cut(s) 184, 632, 1899, 2129, 2402
MspCI CTTAAG 4 cut(s) 245, 400, 1424, 1850
MspI CCGG 7 cut(s) 53, 424, 603, 999, 1248, 1419, 1443
MspR9I CCNGG 8 cut(s) 424, 425, 748, 808, 987, 1014, 1128, 1336
MteI GCGCNGCGC 1 cut(s) 1680
MvaI CCWGG 6 cut(s) 748, 808, 987, 1014, 1128, 1336
MvnI CGCG 4 cut(s) 345, 521, 893, 1677
NciI CCSGG 2 cut(s) 424, 425
NcoI CCATGG 1 cut(s) 2217
NdeI CATATG 1 cut(s) 1542
NheI GCTAGC 1 cut(s) 1174
NlaIII CATG 6 cut(s) 170, 263, 863, 1173, 1308, 2221
NlaIV GGNNCC 5 cut(s) 51, 857, 1071, 1192, 1229
NmeAIII GCCGAG 1 cut(s) 1118
NmuCI GTSAC 3 cut(s) 1041, 2009, 2395
NsiI ATGCAT 2 cut(s) 340, 1171
NspI RCATGY 1 cut(s) 1308
PaeR7I CTCGAG 1 cut(s) 44
PagI TCATGA 1 cut(s) 259
PceI AGGCCT 2 cut(s) 790, 2264
PciI ACATGT 1 cut(s) 1304
PciSI GCTCTTC 3 cut(s) 633, 1152, 1746
PcsI WCGNNNNNNNCGW 1 cut(s) 2314
PfeI GAWTC 7 cut(s) 317, 609, 865, 1006, 1475, 1823, 2371
PfoI TCCNGGA 2 cut(s) 746, 1012
Ple19I CGATCG 1 cut(s) 304
PleI GAGTC 6 cut(s) 157, 672, 940, 1271, 1808, 2177
PmaCI CACGTG 1 cut(s) 235
PmlI CACGTG 1 cut(s) 235
PpsI GAGTC 6 cut(s) 157, 672, 940, 1271, 1808, 2177
Ppu21I YACGTR 2 cut(s) 235, 2114
PscI ACATGT 1 cut(s) 1304
Psp1406I AACGTT 1 cut(s) 1511
Psp6I CCWGG 6 cut(s) 746, 806, 985, 1012, 1126, 1334
PspCI CACGTG 1 cut(s) 235
PspEI GGTNACC 2 cut(s) 1546, 2395
PspFI CCCAGC 1 cut(s) 628
PspGI CCWGG 6 cut(s) 746, 806, 985, 1012, 1126, 1334
PspN4I GGNNCC 5 cut(s) 51, 857, 1071, 1192, 1229
PspPI GGNCC 7 cut(s) 107, 495, 577, 1227, 1771, 1955, 2207
PstI CTGCAG 5 cut(s) 886, 2043, 2128, 2338, 2407
PstNI CAGNNNCTG 1 cut(s) 635
PsuI RGATCY 4 cut(s) 49, 206, 820, 855
PvuI CGATCG 1 cut(s) 304
PvuII CAGCTG 2 cut(s) 184, 632
RsaI GTAC 7 cut(s) 174, 309, 509, 1053, 1071, 1184, 1449
RsaNI GTAC 7 cut(s) 173, 308, 508, 1052, 1070, 1183, 1448
RseI CAYNNNNRTG 1 cut(s) 1487
SalI GTCGAC 1 cut(s) 2351
SapI GCTCTTC 3 cut(s) 633, 1152, 1746
SaqAI TTAA 6 cut(s) 246, 401, 840, 1425, 1851, 1926
Sau96I GGNCC 7 cut(s) 107, 495, 577, 1227, 1771, 1955, 2207
ScaI AGTACT 2 cut(s) 509, 1184
SchI GAGTC 6 cut(s) 157, 673, 941, 1271, 1808, 2177
ScrFI CCNGG 8 cut(s) 424, 425, 748, 808, 987, 1014, 1128, 1336
SduI GDGCHC 2 cut(s) 93, 1923
SfaNI GCATC 4 cut(s) 265, 1095, 2025, 2233
SfcI CTRYAG 6 cut(s) 882, 2039, 2124, 2202, 2334, 2403
Sfr274I CTCGAG 1 cut(s) 44
SgrAI CRCCGGYG 1 cut(s) 1442
SinI GGWCC 3 cut(s) 577, 1771, 2207
SlaI CTCGAG 1 cut(s) 44
SmaI CCCGGG 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 1487
SmlI CTYRAG 9 cut(s) 44, 111, 245, 276, 400, 1424, 1850, 2135, 2411
SmoI CTYRAG 9 cut(s) 44, 111, 245, 276, 400, 1424, 1850, 2135, 2411
SpeI ACTAGT 1 cut(s) 1622
Sse9I AATT 2 cut(s) 1132, 2193
SseBI AGGCCT 2 cut(s) 790, 2264
SspMI CTAG 7 cut(s) 543, 1064, 1175, 1263, 1485, 1623, 1799
StuI AGGCCT 2 cut(s) 790, 2264
StyD4I CCNGG 8 cut(s) 422, 423, 746, 806, 985, 1012, 1126, 1334
StyI CCWWGG 3 cut(s) 721, 1951, 2217
TaaI ACNGT 6 cut(s) 462, 476, 677, 1056, 1502, 1775
TaiI ACGT 4 cut(s) 237, 1514, 1734, 2116
TaqI TCGA 9 cut(s) 45, 120, 442, 868, 1299, 1414, 1716, 1933, 2352
TasI AATT 2 cut(s) 1132, 2193
TatI WGTACW 3 cut(s) 507, 1051, 1182
TfiI GAWTC 7 cut(s) 317, 609, 865, 1006, 1475, 1823, 2371
Tru1I TTAA 6 cut(s) 246, 401, 840, 1425, 1851, 1926
Tru9I TTAA 6 cut(s) 246, 401, 840, 1425, 1851, 1926
TscAI CASTG 6 cut(s) 164, 327, 465, 1080, 1602, 1794
TseFI GTSAC 3 cut(s) 1041, 2009, 2395
Tsp45I GTSAC 3 cut(s) 1041, 2009, 2395
TspDTI ATGAA 2 cut(s) 1145, 1828
TspGWI ACGGA 2 cut(s) 1550, 1832
TspMI CCCGGG 1 cut(s) 423
TspRI CASTG 6 cut(s) 164, 327, 465, 1080, 1602, 1794
Vha464I CTTAAG 4 cut(s) 245, 400, 1424, 1850
VneI GTGCAC 2 cut(s) 89, 1919
VpaK11BI GGWCC 3 cut(s) 577, 1771, 2207
XbaI TCTAGA 1 cut(s) 1798
XceI RCATGY 1 cut(s) 1308
XhoI CTCGAG 1 cut(s) 44
XmaI CCCGGG 1 cut(s) 423
XmiI GTMKAC 1 cut(s) 2352
XspI CTAG 7 cut(s) 543, 1064, 1175, 1263, 1485, 1623, 1799
ZrmI AGTACT 2 cut(s) 509, 1184
Zsp2I ATGCAT 2 cut(s) 340, 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.