Rmu_co8301911.1_g000001

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8301911.1
OG0000179
Physical Location & Seq
Reverse (-)
1 .. 660
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8301911.1_g000001.1.cds

Sequence Viewer

Length: 645 bp
atgttttatgatgaggtcattccgagtgctgaggaattctatagtaagacaaaggatggtcaatattttcttccacttagctgtcaccatttggtcctagcttaccaccgattatgcaagaaggtaaaggtcaaatatgtagtgaaaatgacttcctggattgaattttggtacaaagggccaatgaagcattctaggcctcccaagaaaaccacccgtaacaagaaccaaagaccaagggacacttcgaatccatcagggcatattggtgaagctcaccaacgtacaacagacgaccgaagtgtttttaagagtttggcagtggctgataaagatgtggagtcatcctatctagccgcctttcttgcttgttggttgtgcaaatttgttctaccaacaagtgaggatgatgtgattcgtccaggggtgttcagggttgctggtaagatggtgcatggtcgctcattcagccttgatgccccaatgttagctagtatttataatgggctgaacatgattgttgactccctggatcctggaaactgcccagccacgcttcctttccactttatctactgctggctgagtgtgtattttgataaacattttcgttcggaattgccagactcgtcttccccacatatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

215

Amino Acids

24.69

Weight (kDa)

8.95

Isoelectric Point (pI)

51.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 501
AciI CCGC 1 cut(s) 357
AclWI GGATC 2 cut(s) 527, 540
AcsI RAATTY 3 cut(s) 35, 164, 383
AfaI GTAC 2 cut(s) 173, 286
AgsI TTSAA 1 cut(s) 164
AjnI CCWGG 4 cut(s) 155, 421, 528, 535
AjuI GAANNNNNNNTTGG 4 cut(s) 175, 207, 229, 261
AluBI AGCT 4 cut(s) 81, 101, 275, 491
AluI AGCT 4 cut(s) 81, 101, 275, 491
AlwI GGATC 2 cut(s) 527, 540
AlwNI CAGNNNCTG 1 cut(s) 326
AoxI GGCC 2 cut(s) 179, 197
ApoI RAATTY 3 cut(s) 35, 164, 383
AspS9I GGNCC 2 cut(s) 94, 179
AsuHPI GGTGA 3 cut(s) 77, 269, 281
AsuII TTCGAA 1 cut(s) 248
AvaII GGWCC 1 cut(s) 94
BamHI GGATCC 1 cut(s) 532
BbsI GAAGAC 1 cut(s) 624
BbvCI CCTCAGC 1 cut(s) 30
BccI CCATC 3 cut(s) 50, 262, 442
BciT130I CCWGG 4 cut(s) 157, 423, 530, 537
BfaI CTAG 4 cut(s) 98, 195, 353, 492
BfmI CTRYAG 1 cut(s) 40
BisI GCNGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 358
Bme1390I CCNGG 4 cut(s) 157, 423, 530, 537
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 94, 179
BmiI GGNNCC 1 cut(s) 534
BmrFI CCNGG 4 cut(s) 157, 423, 530, 537
BmsI GCATC 1 cut(s) 466
BpiI GAAGAC 1 cut(s) 624
Bpu10I CCTNAGC 1 cut(s) 30
Bpu14I TTCGAA 1 cut(s) 248
BsaJI CCNNGG 3 cut(s) 236, 422, 528
BseBI CCWGG 4 cut(s) 157, 423, 530, 537
BseDI CCNNGG 3 cut(s) 236, 422, 528
BseGI GGATG 3 cut(s) 61, 344, 412
BseMII CTCAG 2 cut(s) 21, 575
BseYI CCCAGC 1 cut(s) 547
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 2 cut(s) 181, 199
BsiEI CGRYCG 1 cut(s) 298
BslFI GGGAC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 254
BsmI GAATGC 1 cut(s) 190
BsnI GGCC 2 cut(s) 181, 199
Bsp119I TTCGAA 1 cut(s) 248
Bsp143I GATC 1 cut(s) 532
BspACI CCGC 1 cut(s) 357
BspANI GGCC 2 cut(s) 181, 199
BspCNI CTCAG 2 cut(s) 22, 576
BspLI GGNNCC 1 cut(s) 534
BspPI GGATC 2 cut(s) 527, 540
BspT104I TTCGAA 1 cut(s) 248
BssECI CCNNGG 3 cut(s) 236, 422, 528
BssMI GATC 1 cut(s) 532
BssT1I CCWWGG 1 cut(s) 236
Bst2UI CCWGG 4 cut(s) 157, 423, 530, 537
BstBI TTCGAA 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 581
BstDEI CTNAG 3 cut(s) 30, 77, 584
BstF5I GGATG 3 cut(s) 61, 344, 412
BstKTI GATC 1 cut(s) 535
BstMBI GATC 1 cut(s) 532
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 4 cut(s) 187, 196, 365, 468
BstNI CCWGG 4 cut(s) 157, 423, 530, 537
BstSCI CCNGG 4 cut(s) 155, 421, 528, 535
BstSFI CTRYAG 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 624
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
BsuRI GGCC 2 cut(s) 181, 199
BtsCI GGATG 3 cut(s) 61, 344, 412
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 581
CaiI CAGNNNCTG 1 cut(s) 326
Cfr13I GGNCC 2 cut(s) 94, 179
Csp6I GTAC 2 cut(s) 172, 285
CviAII CATG 2 cut(s) 455, 514
CviQI GTAC 2 cut(s) 172, 285
DdeI CTNAG 3 cut(s) 30, 77, 584
DpnI GATC 1 cut(s) 534
DpnII GATC 1 cut(s) 532
Eco130I CCWWGG 1 cut(s) 236
Eco147I AGGCCT 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 94
EcoRI GAATTC 1 cut(s) 35
EcoRII CCWGG 4 cut(s) 155, 421, 528, 535
EcoT14I CCWWGG 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 2 cut(s) 458, 517
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FaqI GGGAC 1 cut(s) 254
FatI CATG 2 cut(s) 454, 513
FauNDI CATATG 1 cut(s) 642
Fnu4HI GCNGC 1 cut(s) 357
FokI GGATG 3 cut(s) 68, 331, 419
Fsp4HI GCNGC 1 cut(s) 357
FspBI CTAG 4 cut(s) 98, 195, 353, 492
GluI GCNGC 1 cut(s) 357
GsaI CCCAGC 1 cut(s) 551
HaeIII GGCC 2 cut(s) 181, 199
Hin1II CATG 2 cut(s) 458, 517
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HinfI GANTC 5 cut(s) 250, 341, 415, 524, 626
HphI GGTGA 3 cut(s) 77, 269, 281
Hpy166II GTNNAC 1 cut(s) 523
Hpy188I TCNGA 2 cut(s) 24, 616
Hpy8I GTNNAC 1 cut(s) 523
HpyAV CCTTC 1 cut(s) 115
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 3 cut(s) 117, 381, 454
HpyF10VI GCNNNNNNNGC 4 cut(s) 187, 196, 365, 468
HpyF3I CTNAG 3 cut(s) 30, 77, 584
HpySE526I ACGT 1 cut(s) 283
Hsp92II CATG 2 cut(s) 458, 517
Kzo9I GATC 1 cut(s) 532
LweI GCATC 1 cut(s) 466
MaeI CTAG 4 cut(s) 98, 195, 353, 492
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 2 cut(s) 83, 218
MalI GATC 1 cut(s) 534
MboI GATC 1 cut(s) 532
MboII GAAGA 2 cut(s) 62, 624
MflI RGATCY 1 cut(s) 532
MluCI AATT 4 cut(s) 35, 164, 383, 617
MlyI GAGTC 3 cut(s) 350, 518, 620
MnlI CCTC 4 cut(s) 7, 25, 210, 397
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 267
MspR9I CCNGG 4 cut(s) 157, 423, 530, 537
Mva1269I GAATGC 1 cut(s) 190
MvaI CCWGG 4 cut(s) 157, 423, 530, 537
MwoI GCNNNNNNNGC 4 cut(s) 187, 196, 365, 468
NdeI CATATG 1 cut(s) 642
NdeII GATC 1 cut(s) 532
NlaIII CATG 2 cut(s) 458, 517
NlaIV GGNNCC 1 cut(s) 534
NmuCI GTSAC 1 cut(s) 83
NspV TTCGAA 1 cut(s) 248
PceI AGGCCT 1 cut(s) 199
PctI GAATGC 1 cut(s) 190
PfeI GAWTC 2 cut(s) 250, 415
PfoI TCCNGGA 2 cut(s) 155, 535
PkrI GCNGC 1 cut(s) 358
PleI GAGTC 3 cut(s) 349, 518, 620
PpsI GAGTC 3 cut(s) 349, 518, 620
PsiI TTATAA 1 cut(s) 501
Psp6I CCWGG 4 cut(s) 155, 421, 528, 535
PspFI CCCAGC 1 cut(s) 547
PspGI CCWGG 4 cut(s) 155, 421, 528, 535
PspN4I GGNNCC 1 cut(s) 534
PspPI GGNCC 2 cut(s) 94, 179
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 1 cut(s) 532
RsaI GTAC 2 cut(s) 173, 286
RsaNI GTAC 2 cut(s) 172, 285
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 1 cut(s) 532
Sau96I GGNCC 2 cut(s) 94, 179
SchI GAGTC 3 cut(s) 350, 518, 620
ScrFI CCNGG 4 cut(s) 157, 423, 530, 537
SetI ASST 8 cut(s) 18, 83, 103, 126, 132, 277, 286, 493
SfaNI GCATC 1 cut(s) 466
SfcI CTRYAG 1 cut(s) 40
SfuI TTCGAA 1 cut(s) 248
SinI GGWCC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 267
Sse9I AATT 4 cut(s) 35, 164, 383, 617
SseBI AGGCCT 1 cut(s) 199
SsiI CCGC 1 cut(s) 357
SspI AATATT 1 cut(s) 65
SspMI CTAG 4 cut(s) 98, 195, 353, 492
StuI AGGCCT 1 cut(s) 199
StyD4I CCNGG 4 cut(s) 155, 421, 528, 535
StyI CCWWGG 1 cut(s) 236
TaiI ACGT 1 cut(s) 286
TaqI TCGA 1 cut(s) 248
TaqII GACCGA 1 cut(s) 312
TasI AATT 4 cut(s) 35, 164, 383, 617
TauI GCSGC 1 cut(s) 359
TfiI GAWTC 2 cut(s) 250, 415
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 1 cut(s) 327
TseFI GTSAC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 1 cut(s) 200
TspRI CASTG 1 cut(s) 327
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 3 cut(s) 35, 164, 383
XspI CTAG 4 cut(s) 98, 195, 353, 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.