pycom08g12110

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000179
Physical Location & Seq
Reverse (-)
10392764 .. 10393985
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g12110.2

Sequence Viewer

Length: 606 bp
ATGCTTCATACAGCTCAAGGAGAGATGTCAATTTCACTTTGGGATCTCCACAAGATAGGGGGATTACCAATCCAAGGTAAGTTTTATGACGAGGTCGTTCCTAGTGCGGAGGAACTTTCTCTCTGCAATAACCGAGGATTGCCTGCGAGTTGTCGCTGTTTATTTTGGGCATACCACAAGCTTTCCCAAGATGCTCGAGGCAAATCAGGCGTGAAAATTTCTTCATGGATCCGCTTCTGGTATTGGGAGGACACAAGGTACAAGAAGTCCTCGAAGAGAAGAAGTTGCAACAAAACCACTAAGCCAAAGGGAGACTCATATCCGTCCGGTGTCATTGGTTCAGCTAGGCGCCGTTCCCCTGCCGAGTTGAGAGCGTTTGAGGACCTTAGCATAGCATCAGAGCATGTGGAAGAATCTTACCTAGCTGCTTTCTTAGCTTGTTGGCTTTGTAAGTTTGTTTTTCCAATCGGCGACGTCAACTTTTTTCGTCCTGGGGTTTTCAAAGTTGCTAGCAAGATGGCTGCAGGTGAATCTTTCAGTCTTGCTATCCCGGTTTTGGCCAATATTTATAACGGCTTGAGTGTTGTTTCGAACTCGTTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

202

Amino Acids

22.45

Weight (kDa)

9.25

Isoelectric Point (pI)

63.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 570
AarI CACCTGC 1 cut(s) 515
AatII GACGTC 1 cut(s) 477
Acc36I ACCTGC 1 cut(s) 515
AccB1I GGYRCC 1 cut(s) 348
AciI CCGC 2 cut(s) 107, 232
AclWI GGATC 3 cut(s) 51, 223, 236
AcoI YGGCCR 1 cut(s) 558
AcsI RAATTY 1 cut(s) 216
AcyI GRCGYC 2 cut(s) 349, 474
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 2 cut(s) 74, 556
AgsI TTSAA 1 cut(s) 502
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 5 cut(s) 14, 181, 344, 425, 437
AluI AGCT 5 cut(s) 14, 181, 344, 425, 437
Alw26I GTCTC 1 cut(s) 306
AlwI GGATC 3 cut(s) 51, 223, 236
Ama87I CYCGRG 1 cut(s) 195
AoxI GGCC 1 cut(s) 558
ApeKI GCWGC 2 cut(s) 425, 521
ApoI RAATTY 1 cut(s) 216
AspLEI GCGC 1 cut(s) 351
AspS9I GGNCC 1 cut(s) 382
AsuC2I CCSGG 1 cut(s) 551
AsuHPI GGTGA 1 cut(s) 539
AsuII TTCGAA 1 cut(s) 590
AsuNHI GCTAGC 1 cut(s) 509
AvaI CYCGRG 1 cut(s) 195
AvaII GGWCC 1 cut(s) 382
BalI TGGCCA 1 cut(s) 560
BamHI GGATCC 1 cut(s) 228
BanI GGYRCC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 412, 508
BccI CCATC 1 cut(s) 511
BceAI ACGGC 2 cut(s) 336, 589
BciT130I CCWGG 1 cut(s) 492
BcnI CCSGG 1 cut(s) 551
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 4 cut(s) 102, 345, 422, 510
BfmI CTRYAG 1 cut(s) 522
BfoI RGCGCY 1 cut(s) 352
BfuAI ACCTGC 1 cut(s) 515
BisI GCNGC 2 cut(s) 426, 522
BlsI GCNGC 2 cut(s) 427, 523
Bme1390I CCNGG 2 cut(s) 492, 551
Bme18I GGWCC 1 cut(s) 382
BmeT110I CYCGRG 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 382
BmiI GGNNCC 2 cut(s) 230, 350
BmrFI CCNGG 2 cut(s) 492, 551
BmsI GCATC 2 cut(s) 181, 404
BmtI GCTAGC 1 cut(s) 513
Bpu10I CCTNAGC 1 cut(s) 386
Bpu14I TTCGAA 1 cut(s) 590
BpuEI CTTGAG 1 cut(s) 598
BpuMI CCSGG 1 cut(s) 551
BsaHI GRCGYC 2 cut(s) 349, 474
BsaJI CCNNGG 3 cut(s) 73, 133, 491
BsaWI WCCGGW 1 cut(s) 326
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 556
BseBI CCWGG 1 cut(s) 492
BseDI CCNNGG 3 cut(s) 73, 133, 491
BseLI CCNNNNNNNGG 2 cut(s) 74, 556
BseXI GCAGC 2 cut(s) 412, 508
BshFI GGCC 1 cut(s) 560
BshNI GGYRCC 1 cut(s) 348
BsiHKCI CYCGRG 1 cut(s) 195
BsiSI CCGG 2 cut(s) 327, 551
BslI CCNNNNNNNGG 2 cut(s) 74, 556
BsmAI GTCTC 1 cut(s) 306
BsnI GGCC 1 cut(s) 560
BsoBI CYCGRG 1 cut(s) 195
Bsp119I TTCGAA 1 cut(s) 590
Bsp143I GATC 2 cut(s) 43, 228
BspACI CCGC 2 cut(s) 107, 232
BspANI GGCC 1 cut(s) 560
BspLI GGNNCC 2 cut(s) 230, 350
BspMAI CTGCAG 1 cut(s) 526
BspMI ACCTGC 1 cut(s) 515
BspOI GCTAGC 1 cut(s) 513
BspPI GGATC 3 cut(s) 51, 223, 236
BspT104I TTCGAA 1 cut(s) 590
BspT107I GGYRCC 1 cut(s) 348
BssECI CCNNGG 3 cut(s) 73, 133, 491
BssMI GATC 2 cut(s) 43, 228
BssNI GRCGYC 2 cut(s) 349, 474
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 492
Bst6I CTCTTC 1 cut(s) 269
BstACI GRCGYC 2 cut(s) 349, 474
BstBI TTCGAA 1 cut(s) 590
BstC8I GCNNGC 2 cut(s) 144, 511
BstDEI CTNAG 3 cut(s) 300, 386, 433
BstH2I RGCGCY 1 cut(s) 352
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 2 cut(s) 46, 231
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 2 cut(s) 43, 228
BstMWI GCNNNNNNNGC 2 cut(s) 207, 434
BstNI CCWGG 1 cut(s) 492
BstNSI RCATGY 1 cut(s) 407
BstSCI CCNGG 2 cut(s) 490, 549
BstSFI CTRYAG 1 cut(s) 522
BstV1I GCAGC 2 cut(s) 412, 508
BstX2I RGATCY 2 cut(s) 43, 228
BstYI RGATCY 2 cut(s) 43, 228
BsuRI GGCC 1 cut(s) 560
BveI ACCTGC 1 cut(s) 515
Cac8I GCNNGC 2 cut(s) 144, 511
CfoI GCGC 1 cut(s) 351
Cfr13I GGNCC 1 cut(s) 382
Csp6I GTAC 1 cut(s) 259
CviAII CATG 2 cut(s) 225, 404
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 3 cut(s) 300, 386, 433
DinI GGCGCC 1 cut(s) 350
DpnI GATC 2 cut(s) 45, 230
DpnII GATC 2 cut(s) 43, 228
EaeI YGGCCR 1 cut(s) 558
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 382
Eco88I CYCGRG 1 cut(s) 195
EcoO109I RGGNCCY 1 cut(s) 382
EcoRII CCWGG 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 73
EgeI GGCGCC 1 cut(s) 350
EheI GGCGCC 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 2 cut(s) 228, 407
FaiI YATR 8 cut(s) 9, 87, 172, 226, 319, 392, 405, 570
FatI CATG 2 cut(s) 224, 403
Fnu4HI GCNGC 2 cut(s) 426, 522
Fsp4HI GCNGC 2 cut(s) 426, 522
FspBI CTAG 4 cut(s) 102, 345, 422, 510
GlaI GCGC 1 cut(s) 350
GluI GCNGC 2 cut(s) 426, 522
HaeII RGCGCY 1 cut(s) 352
HaeIII GGCC 1 cut(s) 560
HapII CCGG 2 cut(s) 327, 551
HhaI GCGC 1 cut(s) 351
Hin1I GRCGYC 2 cut(s) 349, 474
Hin1II CATG 2 cut(s) 228, 407
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HincII GTYRAC 1 cut(s) 478
HindII GTYRAC 1 cut(s) 478
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 3 cut(s) 314, 413, 530
HpaII CCGG 2 cut(s) 327, 551
HphI GGTGA 1 cut(s) 539
Hpy166II GTNNAC 1 cut(s) 478
Hpy188I TCNGA 1 cut(s) 400
Hpy8I GTNNAC 1 cut(s) 478
Hpy99I CGWCG 1 cut(s) 476
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 3 cut(s) 126, 288, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 207, 434
HpyF3I CTNAG 3 cut(s) 300, 386, 433
HpySE526I ACGT 1 cut(s) 474
Hsp92I GRCGYC 2 cut(s) 349, 474
Hsp92II CATG 2 cut(s) 228, 407
HspAI GCGC 1 cut(s) 349
KasI GGCGCC 1 cut(s) 348
Kzo9I GATC 2 cut(s) 43, 228
LpnPI CCDG 9 cut(s) 156, 192, 223, 340, 372, 477, 504, 510, 564
Lsp1109I GCAGC 2 cut(s) 412, 508
LweI GCATC 2 cut(s) 181, 404
MaeI CTAG 4 cut(s) 102, 345, 422, 510
MaeII ACGT 1 cut(s) 474
MalI GATC 2 cut(s) 45, 230
MboI GATC 2 cut(s) 43, 228
MboII GAAGA 4 cut(s) 213, 286, 291, 422
MflI RGATCY 2 cut(s) 43, 228
MlsI TGGCCA 1 cut(s) 560
MluCI AATT 2 cut(s) 30, 216
MluNI TGGCCA 1 cut(s) 560
Mly113I GGCGCC 1 cut(s) 349
MlyI GAGTC 1 cut(s) 308
MnlI CCTC 7 cut(s) 85, 103, 128, 191, 241, 280, 373
Mox20I TGGCCA 1 cut(s) 560
MscI TGGCCA 1 cut(s) 560
Msp20I TGGCCA 1 cut(s) 560
MspI CCGG 2 cut(s) 327, 551
MspR9I CCNGG 2 cut(s) 492, 551
MvaI CCWGG 1 cut(s) 492
MwoI GCNNNNNNNGC 2 cut(s) 207, 434
NarI GGCGCC 1 cut(s) 349
NciI CCSGG 1 cut(s) 551
NdeII GATC 2 cut(s) 43, 228
NheI GCTAGC 1 cut(s) 509
NlaIII CATG 2 cut(s) 228, 407
NlaIV GGNNCC 2 cut(s) 230, 350
NmeAIII GCCGAG 1 cut(s) 388
NspI RCATGY 1 cut(s) 407
NspV TTCGAA 1 cut(s) 590
PaeR7I CTCGAG 1 cut(s) 195
PaqCI CACCTGC 1 cut(s) 515
PfeI GAWTC 2 cut(s) 413, 530
PflFI GACNNNGTC 1 cut(s) 92
PkrI GCNGC 2 cut(s) 427, 523
PleI GAGTC 1 cut(s) 308
PluTI GGCGCC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 308
PpuMI RGGWCCY 1 cut(s) 382
PsiI TTATAA 1 cut(s) 570
Psp5II RGGWCCY 1 cut(s) 382
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 2 cut(s) 230, 350
PspPI GGNCC 1 cut(s) 382
PspPPI RGGWCCY 1 cut(s) 382
PspXI VCTCGAGB 1 cut(s) 195
PstI CTGCAG 1 cut(s) 526
PsuI RGATCY 2 cut(s) 43, 228
PsyI GACNNNGTC 1 cut(s) 92
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SatI GCNGC 2 cut(s) 426, 522
Sau3AI GATC 2 cut(s) 43, 228
Sau96I GGNCC 1 cut(s) 382
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 2 cut(s) 492, 551
SfaNI GCATC 2 cut(s) 181, 404
SfcI CTRYAG 1 cut(s) 522
SfoI GGCGCC 1 cut(s) 350
Sfr274I CTCGAG 1 cut(s) 195
SfuI TTCGAA 1 cut(s) 590
SinI GGWCC 1 cut(s) 382
SlaI CTCGAG 1 cut(s) 195
SmlI CTYRAG 3 cut(s) 15, 195, 577
SmoI CTYRAG 3 cut(s) 15, 195, 577
Sse9I AATT 2 cut(s) 30, 216
SsiI CCGC 2 cut(s) 107, 232
SspDI GGCGCC 1 cut(s) 348
SspI AATATT 1 cut(s) 565
SspMI CTAG 4 cut(s) 102, 345, 422, 510
StyD4I CCNGG 2 cut(s) 490, 549
StyI CCWWGG 1 cut(s) 73
TaiI ACGT 1 cut(s) 477
TaqI TCGA 3 cut(s) 196, 272, 590
TasI AATT 2 cut(s) 30, 216
TfiI GAWTC 2 cut(s) 413, 530
TseI GCWGC 2 cut(s) 425, 521
TspDTI ATGAA 1 cut(s) 213
TspGWI ACGGA 1 cut(s) 312
Tth111I GACNNNGTC 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 382
XapI RAATTY 1 cut(s) 216
XceI RCATGY 1 cut(s) 407
XhoI CTCGAG 1 cut(s) 195
XspI CTAG 4 cut(s) 102, 345, 422, 510
ZraI GACGTC 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.