FvH4_1g18561

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000179
Physical Location & Seq
Forward (+)
10909959 .. 10910996
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18561.t1

Sequence Viewer

Length: 636 bp
ATGCCTCGCTGCCTCAAGAGCAAAATGAATTGCTTTAGATCTTCCTCGTCAGGAAAATCACTTGGTTCATCAGAACCAACCGAGGTGGATCAACAGCTCCTAAACATTCATCGTCAAACAGCTACGATGATCTGCAAAGAGATTGAGAGGGTGGTAGTAAACAATTCCTCAGAGGGCCTCCTTTCAATCGAGCTGCGAGAACTCGACAAGTTTGTCAAAGCTATTACCGATCTTGGCTTTGATTCTTCGAAGATAGAAGCCCAGGTTGAGAAGCTTAATGAAAACATTGCTAAATATAAGTCTGCACGGTCTGCATGTATACCAGGCTTAGCAGCCATAGAATCTCGCATGGCGAAGGCTTCGTCTAACCGTAAGGATTTGTTACTGAAAAAGGAGTCTTTGGATGAGAGTTTGAAGAAGTTGAAAAGAGAGCAAGAAGTGCTGGAGGGGGAGATTGATCAAGTTGATTTGCAGATCAAGGATCATGACATGAAGATTGATCGCATGAAAAAAGAGAGAGCCAAAATTACAGAGGCTCCCAATGTGACTGCTGGCAATGCTCAGACTTTGAAGGCCCTGGAGGACTTGATTGAGGCTCAGAGAAGTGAGTTTGAGGGTTTGACATACTTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

212

Amino Acids

23.63

Weight (kDa)

6.77

Isoelectric Point (pI)

57.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 212
AccI GTMKAC 1 cut(s) 319
AclWI GGATC 2 cut(s) 96, 489
AgsI TTSAA 4 cut(s) 186, 415, 424, 571
AjnI CCWGG 3 cut(s) 261, 322, 576
AluBI AGCT 5 cut(s) 97, 122, 193, 221, 274
AluI AGCT 5 cut(s) 97, 122, 193, 221, 274
AlwI GGATC 2 cut(s) 96, 489
AoxI GGCC 2 cut(s) 175, 573
ApeKI GCWGC 3 cut(s) 9, 193, 332
ArsI GACNNNNNNTTYG 2 cut(s) 347, 379
AspS9I GGNCC 2 cut(s) 175, 574
AsuII TTCGAA 1 cut(s) 248
BbvI GCAGC 2 cut(s) 180, 344
BciT130I CCWGG 3 cut(s) 263, 324, 578
BclI TGATCA 1 cut(s) 457
BglII AGATCT 1 cut(s) 38
BisI GCNGC 3 cut(s) 10, 194, 333
BlpI GCTNAGC 1 cut(s) 328
BlsI GCNGC 3 cut(s) 11, 195, 334
Bme1390I CCNGG 3 cut(s) 263, 324, 578
BmgT120I GGNCC 2 cut(s) 175, 574
BmiI GGNNCC 1 cut(s) 537
BmrFI CCNGG 3 cut(s) 263, 324, 578
BpmI CTGGAG 2 cut(s) 464, 599
Bpu1102I GCTNAGC 1 cut(s) 328
Bpu14I TTCGAA 1 cut(s) 248
BsaJI CCNNGG 3 cut(s) 81, 261, 576
BsaXI ACNNNNNCTCC 2 cut(s) 520, 550
Bse3DI GCAATG 2 cut(s) 285, 562
BseBI CCWGG 3 cut(s) 263, 324, 578
BseDI CCNNGG 3 cut(s) 81, 261, 576
BseGI GGATG 1 cut(s) 409
BseMI GCAATG 2 cut(s) 285, 562
BseMII CTCAG 3 cut(s) 183, 575, 611
BseXI GCAGC 2 cut(s) 180, 344
BsgI GTGCAG 1 cut(s) 288
BshFI GGCC 2 cut(s) 177, 575
BsnI GGCC 2 cut(s) 177, 575
Bsp119I TTCGAA 1 cut(s) 248
Bsp143I GATC 8 cut(s) 38, 88, 129, 229, 457, 474, 481, 499
Bsp1720I GCTNAGC 1 cut(s) 328
BspANI GGCC 2 cut(s) 177, 575
BspCNI CTCAG 3 cut(s) 182, 574, 610
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 1 cut(s) 537
BspPI GGATC 2 cut(s) 96, 489
BspT104I TTCGAA 1 cut(s) 248
BsrDI GCAATG 2 cut(s) 285, 562
BssECI CCNNGG 3 cut(s) 81, 261, 576
BssMI GATC 8 cut(s) 38, 88, 129, 229, 457, 474, 481, 499
BssNAI GTATAC 1 cut(s) 320
Bst1107I GTATAC 1 cut(s) 320
Bst2UI CCWGG 3 cut(s) 263, 324, 578
Bst4CI ACNGT 2 cut(s) 309, 371
BstAPI GCANNNNNTGC 2 cut(s) 311, 439
BstBI TTCGAA 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 553
BstDEI CTNAG 4 cut(s) 169, 328, 561, 597
BstF5I GGATG 1 cut(s) 409
BstKTI GATC 8 cut(s) 41, 91, 132, 232, 460, 477, 484, 502
BstMBI GATC 8 cut(s) 38, 88, 129, 229, 457, 474, 481, 499
BstMWI GCNNNNNNNGC 4 cut(s) 18, 311, 439, 557
BstNI CCWGG 3 cut(s) 263, 324, 578
BstNSI RCATGY 1 cut(s) 318
BstSCI CCNGG 3 cut(s) 261, 322, 576
BstV1I GCAGC 2 cut(s) 180, 344
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BstZ17I GTATAC 1 cut(s) 320
BsuRI GGCC 2 cut(s) 177, 575
BtsCI GGATG 1 cut(s) 409
Cac8I GCNNGC 1 cut(s) 553
CciI TCATGA 1 cut(s) 484
Cfr13I GGNCC 2 cut(s) 175, 574
CspCI CAANNNNNGTGG 2 cut(s) 66, 101
CviAII CATG 5 cut(s) 315, 349, 485, 490, 505
DdeI CTNAG 4 cut(s) 169, 328, 561, 597
DpnI GATC 8 cut(s) 40, 90, 131, 231, 459, 476, 483, 501
DpnII GATC 8 cut(s) 38, 88, 129, 229, 457, 474, 481, 499
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
EcoO109I RGGNCCY 2 cut(s) 175, 574
EcoRII CCWGG 3 cut(s) 261, 322, 576
FaeI CATG 5 cut(s) 318, 352, 488, 493, 508
FaiI YATR 9 cut(s) 297, 316, 320, 338, 350, 486, 491, 506, 625
FatI CATG 5 cut(s) 314, 348, 484, 489, 504
FbaI TGATCA 1 cut(s) 457
FblI GTMKAC 1 cut(s) 319
Fnu4HI GCNGC 3 cut(s) 10, 194, 333
FokI GGATG 1 cut(s) 416
Fsp4HI GCNGC 3 cut(s) 10, 194, 333
GluI GCNGC 3 cut(s) 10, 194, 333
GsuI CTGGAG 2 cut(s) 464, 599
HaeIII GGCC 2 cut(s) 177, 575
Hin1II CATG 5 cut(s) 318, 352, 488, 493, 508
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 3 cut(s) 242, 341, 395
Hpy166II GTNNAC 2 cut(s) 160, 320
Hpy188I TCNGA 4 cut(s) 73, 172, 564, 600
Hpy188III TCNNGA 3 cut(s) 16, 51, 485
Hpy8I GTNNAC 2 cut(s) 160, 320
HpyAV CCTTC 2 cut(s) 349, 565
HpyCH4III ACNGT 2 cut(s) 309, 371
HpyCH4V TGCA 4 cut(s) 135, 305, 314, 472
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 311, 439, 557
HpyF3I CTNAG 4 cut(s) 169, 328, 561, 597
Hsp92II CATG 5 cut(s) 318, 352, 488, 493, 508
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 8 cut(s) 38, 88, 129, 229, 457, 474, 481, 499
LmnI GCTCC 2 cut(s) 102, 541
LpnPI CCDG 9 cut(s) 36, 248, 275, 309, 336, 428, 537, 563, 590
Lsp1109I GCAGC 2 cut(s) 180, 344
MaeIII GTNAC 2 cut(s) 381, 544
MalI GATC 8 cut(s) 40, 90, 131, 231, 459, 476, 483, 501
MboI GATC 8 cut(s) 38, 88, 129, 229, 457, 474, 481, 499
MboII GAAGA 5 cut(s) 33, 237, 262, 427, 505
MflI RGATCY 1 cut(s) 38
MluCI AATT 3 cut(s) 28, 163, 525
MlyI GAGTC 1 cut(s) 404
MseI TTAA 1 cut(s) 276
MspR9I CCNGG 3 cut(s) 263, 324, 578
MvaI CCWGG 3 cut(s) 263, 324, 578
MwoI GCNNNNNNNGC 4 cut(s) 18, 311, 439, 557
NdeII GATC 8 cut(s) 38, 88, 129, 229, 457, 474, 481, 499
NlaIII CATG 5 cut(s) 318, 352, 488, 493, 508
NlaIV GGNNCC 1 cut(s) 537
NmuCI GTSAC 1 cut(s) 544
NspI RCATGY 1 cut(s) 318
NspV TTCGAA 1 cut(s) 248
PagI TCATGA 1 cut(s) 484
PfeI GAWTC 2 cut(s) 242, 341
PkrI GCNGC 3 cut(s) 11, 195, 334
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
Psp6I CCWGG 3 cut(s) 261, 322, 576
PspGI CCWGG 3 cut(s) 261, 322, 576
PspN4I GGNNCC 1 cut(s) 537
PspPI GGNCC 2 cut(s) 175, 574
PsuI RGATCY 1 cut(s) 38
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 3 cut(s) 10, 194, 333
Sau3AI GATC 8 cut(s) 38, 88, 129, 229, 457, 474, 481, 499
Sau96I GGNCC 2 cut(s) 175, 574
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 3 cut(s) 263, 324, 578
SetI ASST 7 cut(s) 87, 99, 124, 195, 223, 267, 276
SfuI TTCGAA 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 3 cut(s) 28, 163, 525
StyD4I CCNGG 3 cut(s) 261, 322, 576
TaaI ACNGT 2 cut(s) 309, 371
TaqI TCGA 3 cut(s) 189, 204, 248
TasI AATT 3 cut(s) 28, 163, 525
TfiI GAWTC 2 cut(s) 242, 341
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TseFI GTSAC 1 cut(s) 544
TseI GCWGC 3 cut(s) 9, 193, 332
Tsp45I GTSAC 1 cut(s) 544
TspDTI ATGAA 6 cut(s) 41, 57, 98, 294, 506, 521
XceI RCATGY 1 cut(s) 318
XmiI GTMKAC 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.