Rmu_sc0000480.1_g000024

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000480.1
OG0000179
Physical Location & Seq
Forward (+)
123440 .. 124989
1550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000480.1_g000024.1.cds

Sequence Viewer

Length: 534 bp
atggctttcttcaagtgcttcaagaaagggacaatcaccattctcgaggatccggaggacgctcaaagtgatggaactactctgcaagtgcacccatctttgactgggcctcaagcaatcgatgtccctccttatgacccttcagctcacatcctccagtggactcatgtggtacctcgccagctggctatgtttcgacaaccaagatctggaagagaccaacaaaactcgcatttttatgatgaggtggttccagctgctgaagagcttactgtagcaagcaaagggagtcaacaaagttgccgctatttgtttctcgcctaccataagctttgcaaagaaggccaagggcagaaagtgaagataacttcatggatacgatattggtatagaggagctttgcgctataagaggcctccaaacaaaagtaccaggaacaaaagagatccacccagaatgtgtttaatccatctggcaggatccatgagatccgacagcgtacttctgcagaccttgcagtatttgatgacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

177

Amino Acids

20.34

Weight (kDa)

9.54

Isoelectric Point (pI)

61.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 172
AccB1I GGYRCC 1 cut(s) 172
AccB7I CCANNNNNTGG 1 cut(s) 209
AccIII TCCGGA 1 cut(s) 52
AciI CCGC 1 cut(s) 304
AclWI GGATC 6 cut(s) 44, 57, 440, 474, 483, 487
AcuI CTGAAG 2 cut(s) 126, 282
AfaI GTAC 3 cut(s) 174, 430, 501
AfiI CCNNNNNNNGG 1 cut(s) 209
AgsI TTSAA 2 cut(s) 13, 22
AjnI CCWGG 1 cut(s) 431
AluBI AGCT 6 cut(s) 146, 184, 257, 268, 331, 398
AluI AGCT 6 cut(s) 146, 184, 257, 268, 331, 398
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 1 cut(s) 210
Alw44I GTGCAC 1 cut(s) 89
AlwI GGATC 6 cut(s) 44, 57, 440, 474, 483, 487
AlwNI CAGNNNCTG 1 cut(s) 260
Ama87I CYCGRG 1 cut(s) 44
Aor13HI TCCGGA 1 cut(s) 52
AoxI GGCC 3 cut(s) 107, 343, 413
ApaLI GTGCAC 1 cut(s) 89
ApeKI GCWGC 1 cut(s) 257
Asp718I GGTACC 1 cut(s) 172
AspLEI GCGC 1 cut(s) 405
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 44
BaeGI GKGCMC 1 cut(s) 93
BaeI ACNNNNGTAYC 2 cut(s) 412, 445
BamHI GGATCC 2 cut(s) 49, 479
BanI GGYRCC 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 244
BccI CCATC 3 cut(s) 65, 103, 477
BciT130I CCWGG 1 cut(s) 433
BciVI GTATCC 1 cut(s) 369
BcoDI GTCTC 1 cut(s) 210
BfmI CTRYAG 2 cut(s) 273, 506
BfuI GTATCC 1 cut(s) 369
BglII AGATCT 1 cut(s) 206
BisI GCNGC 2 cut(s) 258, 304
BlsI GCNGC 2 cut(s) 259, 305
Bme1390I CCNGG 1 cut(s) 433
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 4 cut(s) 51, 174, 252, 481
BmrFI CCNGG 1 cut(s) 433
BmrI ACTGGG 1 cut(s) 114
BmuI ACTGGG 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 96
Bsa29I ATCGAT 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 346
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse1I ACTGG 2 cut(s) 109, 157
BseAI TCCGGA 1 cut(s) 52
BseBI CCWGG 1 cut(s) 433
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 346
BseGI GGATG 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 209
BseNI ACTGG 2 cut(s) 109, 157
BseRI GAGGAG 1 cut(s) 408
BseSI GKGCMC 1 cut(s) 93
BseXI GCAGC 1 cut(s) 244
BshFI GGCC 3 cut(s) 109, 345, 415
BshNI GGYRCC 1 cut(s) 172
BshVI ATCGAT 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 2 cut(s) 43, 110
BslI CCNNNNNNNGG 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 210
BsmFI GGGAC 2 cut(s) 43, 110
BsnI GGCC 3 cut(s) 109, 345, 415
Bso31I GGTCTC 1 cut(s) 210
BsoBI CYCGRG 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 93
Bsp13I TCCGGA 1 cut(s) 52
Bsp143I GATC 5 cut(s) 49, 206, 445, 479, 488
BspACI CCGC 1 cut(s) 304
BspANI GGCC 3 cut(s) 109, 345, 415
BspDI ATCGAT 1 cut(s) 120
BspEI TCCGGA 1 cut(s) 52
BspLI GGNNCC 4 cut(s) 51, 174, 252, 481
BspMAI CTGCAG 1 cut(s) 510
BspPI GGATC 6 cut(s) 44, 57, 440, 474, 483, 487
BspQI GCTCTTC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 172
BspTNI GGTCTC 1 cut(s) 210
BsrI ACTGG 2 cut(s) 109, 157
BssECI CCNNGG 1 cut(s) 346
BssMI GATC 5 cut(s) 49, 206, 445, 479, 488
BssT1I CCWWGG 1 cut(s) 346
Bst2UI CCWGG 1 cut(s) 433
Bst4CI ACNGT 1 cut(s) 274
Bst6I CTCTTC 2 cut(s) 208, 258
BstAPI GCANNNNNTGC 1 cut(s) 514
BstC8I GCNNGC 3 cut(s) 182, 186, 280
BstDEI CTNAG 1 cut(s) 531
BstF5I GGATG 1 cut(s) 150
BstHHI GCGC 1 cut(s) 405
BstKTI GATC 5 cut(s) 52, 209, 448, 482, 491
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 5 cut(s) 49, 206, 445, 479, 488
BstMWI GCNNNNNNNGC 2 cut(s) 342, 514
BstNI CCWGG 1 cut(s) 433
BstSCI CCNGG 1 cut(s) 431
BstSFI CTRYAG 2 cut(s) 273, 506
BstSLI GKGCMC 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 244
BstX2I RGATCY 5 cut(s) 49, 206, 445, 479, 488
BstYI RGATCY 5 cut(s) 49, 206, 445, 479, 488
Bsu15I ATCGAT 1 cut(s) 120
BsuI GTATCC 1 cut(s) 369
BsuRI GGCC 3 cut(s) 109, 345, 415
BsuTUI ATCGAT 1 cut(s) 120
BtsCI GGATG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 164
Cac8I GCNNGC 3 cut(s) 182, 186, 280
CaiI CAGNNNCTG 1 cut(s) 260
CfoI GCGC 1 cut(s) 405
Cfr13I GGNCC 1 cut(s) 107
ClaI ATCGAT 1 cut(s) 120
CseI GACGC 1 cut(s) 68
Csp6I GTAC 3 cut(s) 173, 429, 500
CviAII CATG 3 cut(s) 167, 372, 484
CviQI GTAC 3 cut(s) 173, 429, 500
DdeI CTNAG 1 cut(s) 531
DpnI GATC 5 cut(s) 51, 208, 447, 481, 490
DpnII GATC 5 cut(s) 49, 206, 445, 479, 488
Eam1104I CTCTTC 2 cut(s) 208, 258
EarI CTCTTC 2 cut(s) 208, 258
Eco130I CCWWGG 1 cut(s) 346
Eco147I AGGCCT 1 cut(s) 415
Eco31I GGTCTC 1 cut(s) 210
Eco57I CTGAAG 2 cut(s) 126, 282
Eco88I CYCGRG 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 431
EcoT14I CCWWGG 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 346
FaeI CATG 3 cut(s) 170, 375, 487
FaiI YATR 9 cut(s) 135, 168, 191, 240, 327, 373, 390, 408, 485
FaqI GGGAC 2 cut(s) 43, 110
FatI CATG 3 cut(s) 166, 371, 483
Fnu4HI GCNGC 2 cut(s) 258, 304
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 2 cut(s) 258, 304
GlaI GCGC 1 cut(s) 404
GluI GCNGC 2 cut(s) 258, 304
GsuI CTGGAG 1 cut(s) 140
HaeIII GGCC 3 cut(s) 109, 345, 415
HapII CCGG 1 cut(s) 53
HgaI GACGC 1 cut(s) 68
HhaI GCGC 1 cut(s) 405
Hin1II CATG 3 cut(s) 170, 375, 487
Hin6I GCGC 1 cut(s) 403
HinP1I GCGC 1 cut(s) 403
HincII GTYRAC 1 cut(s) 293
HindII GTYRAC 1 cut(s) 293
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 2 cut(s) 163, 289
HpaII CCGG 1 cut(s) 53
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 3 cut(s) 91, 162, 293
Hpy188I TCNGA 1 cut(s) 493
Hpy188III TCNNGA 4 cut(s) 22, 44, 53, 210
Hpy8I GTNNAC 3 cut(s) 91, 162, 293
HpyAV CCTTC 2 cut(s) 150, 335
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4V TGCA 5 cut(s) 85, 91, 336, 508, 517
HpyF10VI GCNNNNNNNGC 2 cut(s) 342, 514
HpyF3I CTNAG 1 cut(s) 531
Hsp92II CATG 3 cut(s) 170, 375, 487
HspAI GCGC 1 cut(s) 403
Kpn2I TCCGGA 1 cut(s) 52
KpnI GGTACC 1 cut(s) 176
Kzo9I GATC 5 cut(s) 49, 206, 445, 479, 488
LguI GCTCTTC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 395
Lsp1109I GCAGC 1 cut(s) 244
MalI GATC 5 cut(s) 51, 208, 447, 481, 490
MboI GATC 5 cut(s) 49, 206, 445, 479, 488
MboII GAAGA 3 cut(s) 225, 275, 373
MflI RGATCY 5 cut(s) 49, 206, 445, 479, 488
MhlI GDGCHC 1 cut(s) 93
MlyI GAGTC 2 cut(s) 157, 298
MmeI TCCRAC 1 cut(s) 516
MroI TCCGGA 1 cut(s) 52
MseI TTAA 1 cut(s) 464
MslI CAYNNNNRTG 1 cut(s) 237
MspA1I CMGCKG 2 cut(s) 184, 257
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 433
MvaI CCWGG 1 cut(s) 433
MwoI GCNNNNNNNGC 2 cut(s) 342, 514
NdeII GATC 5 cut(s) 49, 206, 445, 479, 488
NlaIII CATG 3 cut(s) 170, 375, 487
NlaIV GGNNCC 4 cut(s) 51, 174, 252, 481
PaeR7I CTCGAG 1 cut(s) 44
PceI AGGCCT 1 cut(s) 415
PciSI GCTCTTC 1 cut(s) 258
PflMI CCANNNNNTGG 1 cut(s) 209
PkrI GCNGC 2 cut(s) 259, 305
PleI GAGTC 2 cut(s) 157, 297
PpsI GAGTC 2 cut(s) 157, 297
Psp6I CCWGG 1 cut(s) 431
PspGI CCWGG 1 cut(s) 431
PspN4I GGNNCC 4 cut(s) 51, 174, 252, 481
PspPI GGNCC 1 cut(s) 107
PstI CTGCAG 1 cut(s) 510
PstNI CAGNNNCTG 1 cut(s) 260
PsuI RGATCY 5 cut(s) 49, 206, 445, 479, 488
PvuII CAGCTG 2 cut(s) 184, 257
RsaI GTAC 3 cut(s) 174, 430, 501
RsaNI GTAC 3 cut(s) 173, 429, 500
RseI CAYNNNNRTG 1 cut(s) 237
SapI GCTCTTC 1 cut(s) 258
SaqAI TTAA 1 cut(s) 464
SatI GCNGC 2 cut(s) 258, 304
Sau3AI GATC 5 cut(s) 49, 206, 445, 479, 488
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 2 cut(s) 157, 298
ScrFI CCNGG 1 cut(s) 433
SduI GDGCHC 1 cut(s) 93
SetI ASST 9 cut(s) 148, 178, 186, 249, 259, 270, 333, 400, 515
SfcI CTRYAG 2 cut(s) 273, 506
Sfr274I CTCGAG 1 cut(s) 44
SlaI CTCGAG 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 2 cut(s) 44, 111
SmoI CTYRAG 2 cut(s) 44, 111
SseBI AGGCCT 1 cut(s) 415
SsiI CCGC 1 cut(s) 304
StuI AGGCCT 1 cut(s) 415
StyD4I CCNGG 1 cut(s) 431
StyI CCWWGG 1 cut(s) 346
TaaI ACNGT 1 cut(s) 274
TaqI TCGA 3 cut(s) 45, 120, 196
TauI GCSGC 1 cut(s) 306
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TscAI CASTG 1 cut(s) 164
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 360
TspRI CASTG 1 cut(s) 164
Van91I CCANNNNNTGG 1 cut(s) 209
VneI GTGCAC 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.