Rmu_sc0003069.1_g000034

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003069.1
OG0000179
Physical Location & Seq
Reverse (-)
169571 .. 170152
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003069.1_g000034.1.cds

Sequence Viewer

Length: 582 bp
atgcttctcagcgatcgtgtatgcaacggttcagtgcagtggagcagtgcatttcgtgcaaaagggggcttcacttacacagagttctactgggaatgggtaaaagatatcttaagcaggaatggcaagcttactcgggaggccggtctctatcgagcgatattcgcctcaatattcagctatgaccgtgttgcacctgttatacgggctttctgtgagtattggtgtcctacgacgaataccctccacacttctagcgggaaaatgtccatctccctctgggatttggaccaacttggaggtttgcccattgccggacgattttatgataaggttggtccagctgctgaagagctttttgcaacaagcaaagggagtcaacagagctgccgctatttttttctcgcctaccataagctttgtaaggaaggtcaagggcagaaagtgaagataacttcatggatacaatattggtatagaggagctttgcgttacaagaggcctccgaacaaaagcaccaggaataaaagagatctgcccccgaatgcgtttaatccatctggcaggatccatgagatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

193

Amino Acids

22.21

Weight (kDa)

9.68

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 258, 391
AclWI GGATC 2 cut(s) 562, 575
AcuI CTGAAG 1 cut(s) 369
AfiI CCNNNNNNNGG 1 cut(s) 314
AflII CTTAAG 1 cut(s) 112
AjnI CCWGG 1 cut(s) 518
AluBI AGCT 7 cut(s) 130, 180, 344, 355, 387, 418, 485
AluI AGCT 7 cut(s) 130, 180, 344, 355, 387, 418, 485
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 2 cut(s) 562, 575
AlwNI CAGNNNCTG 1 cut(s) 347
Ama87I CYCGRG 1 cut(s) 135
AoxI GGCC 2 cut(s) 141, 500
ApeKI GCWGC 2 cut(s) 344, 387
AspS9I GGNCC 2 cut(s) 289, 338
AvaI CYCGRG 1 cut(s) 135
AvaII GGWCC 2 cut(s) 289, 338
BamHI GGATCC 1 cut(s) 567
BbvI GCAGC 2 cut(s) 331, 374
BccI CCATC 2 cut(s) 278, 565
BciT130I CCWGG 1 cut(s) 520
BciVI GTATCC 1 cut(s) 456
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 1 cut(s) 255
BfrI CTTAAG 1 cut(s) 112
BfuI GTATCC 1 cut(s) 456
BglII AGATCT 2 cut(s) 532, 576
BisI GCNGC 3 cut(s) 345, 388, 391
BlsI GCNGC 3 cut(s) 346, 389, 392
Bme1390I CCNGG 1 cut(s) 520
Bme18I GGWCC 2 cut(s) 289, 338
BmeT110I CYCGRG 1 cut(s) 135
BmgT120I GGNCC 2 cut(s) 289, 338
BmiI GGNNCC 1 cut(s) 569
BmrFI CCNGG 1 cut(s) 520
BmrI ACTGGG 1 cut(s) 100
BmuI ACTGGG 1 cut(s) 100
BsaI GGTCTC 1 cut(s) 152
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 95
Bse3DI GCAATG 1 cut(s) 309
BseBI CCWGG 1 cut(s) 520
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 22
BseNI ACTGG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 495
BseXI GCAGC 2 cut(s) 331, 374
BsgI GTGCAG 1 cut(s) 56
Bsh1285I CGRYCG 1 cut(s) 16
BshFI GGCC 2 cut(s) 143, 502
BsiEI CGRYCG 1 cut(s) 16
BsiHKCI CYCGRG 1 cut(s) 135
BsiSI CCGG 2 cut(s) 144, 315
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 550
BsnI GGCC 2 cut(s) 143, 502
Bso31I GGTCTC 1 cut(s) 152
BsoBI CYCGRG 1 cut(s) 135
Bsp143I GATC 4 cut(s) 13, 532, 567, 576
BspACI CCGC 2 cut(s) 258, 391
BspANI GGCC 2 cut(s) 143, 502
BspCNI CTCAG 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 569
BspPI GGATC 2 cut(s) 562, 575
BspQI GCTCTTC 1 cut(s) 345
BspTI CTTAAG 1 cut(s) 112
BspTNI GGTCTC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 143
BsrI ACTGG 1 cut(s) 95
BssAI RCCGGY 1 cut(s) 143
BssMI GATC 4 cut(s) 13, 532, 567, 576
Bst2UI CCWGG 1 cut(s) 520
Bst4CI ACNGT 2 cut(s) 29, 188
Bst6I CTCTTC 1 cut(s) 345
BstAFI CTTAAG 1 cut(s) 112
BstAPI GCANNNNNTGC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 8
BstKTI GATC 4 cut(s) 16, 535, 570, 579
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 4 cut(s) 13, 532, 567, 576
BstMCI CGRYCG 1 cut(s) 16
BstMWI GCNNNNNNNGC 3 cut(s) 56, 123, 164
BstNI CCWGG 1 cut(s) 520
BstSCI CCNGG 1 cut(s) 518
BstV1I GCAGC 2 cut(s) 331, 374
BstX2I RGATCY 3 cut(s) 532, 567, 576
BstYI RGATCY 3 cut(s) 532, 567, 576
BsuI GTATCC 1 cut(s) 456
BsuRI GGCC 2 cut(s) 143, 502
BtsI GCAGTG 2 cut(s) 44, 52
BtsIMutI CAGTG 3 cut(s) 39, 44, 52
Cac8I GCNNGC 1 cut(s) 128
CaiI CAGNNNCTG 1 cut(s) 347
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 2 cut(s) 289, 338
CviAII CATG 2 cut(s) 459, 572
DdeI CTNAG 1 cut(s) 8
DpnI GATC 4 cut(s) 15, 534, 569, 578
DpnII GATC 4 cut(s) 13, 532, 567, 576
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Eco147I AGGCCT 1 cut(s) 502
Eco31I GGTCTC 1 cut(s) 152
Eco32I GATATC 1 cut(s) 109
Eco47I GGWCC 2 cut(s) 289, 338
Eco57I CTGAAG 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 518
EcoRV GATATC 1 cut(s) 109
FaeI CATG 2 cut(s) 462, 575
FaiI YATR 8 cut(s) 22, 183, 203, 327, 414, 460, 477, 573
FatI CATG 2 cut(s) 458, 571
FauI CCCGC 1 cut(s) 251
Fnu4HI GCNGC 3 cut(s) 345, 388, 391
Fsp4HI GCNGC 3 cut(s) 345, 388, 391
FspBI CTAG 1 cut(s) 255
GluI GCNGC 3 cut(s) 345, 388, 391
HaeIII GGCC 2 cut(s) 143, 502
HapII CCGG 2 cut(s) 144, 315
Hin1II CATG 2 cut(s) 462, 575
HincII GTYRAC 1 cut(s) 380
HindII GTYRAC 1 cut(s) 380
HindIII AAGCTT 2 cut(s) 128, 416
HinfI GANTC 1 cut(s) 376
HpaII CCGG 2 cut(s) 144, 315
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 2 cut(s) 507, 581
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 1 cut(s) 380
Hpy99I CGWCG 1 cut(s) 238
HpyAV CCTTC 1 cut(s) 422
HpyCH4III ACNGT 2 cut(s) 29, 188
HpyCH4V TGCA 6 cut(s) 24, 37, 50, 59, 194, 362
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 123, 164
HpyF3I CTNAG 1 cut(s) 8
Hsp92II CATG 2 cut(s) 462, 575
Kzo9I GATC 4 cut(s) 13, 532, 567, 576
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 2 cut(s) 42, 482
Lsp1109I GCAGC 2 cut(s) 331, 374
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 491
MalI GATC 4 cut(s) 15, 534, 569, 578
MboI GATC 4 cut(s) 13, 532, 567, 576
MboII GAAGA 2 cut(s) 362, 460
MflI RGATCY 3 cut(s) 532, 567, 576
MlyI GAGTC 1 cut(s) 385
MnlI CCTC 8 cut(s) 133, 178, 254, 287, 293, 473, 492, 513
MseI TTAA 2 cut(s) 113, 552
MspA1I CMGCKG 1 cut(s) 344
MspCI CTTAAG 1 cut(s) 112
MspI CCGG 2 cut(s) 144, 315
MspR9I CCNGG 1 cut(s) 520
Mva1269I GAATGC 1 cut(s) 550
MvaI CCWGG 1 cut(s) 520
MwoI GCNNNNNNNGC 3 cut(s) 56, 123, 164
NdeII GATC 4 cut(s) 13, 532, 567, 576
NlaIII CATG 2 cut(s) 462, 575
NlaIV GGNNCC 1 cut(s) 569
PceI AGGCCT 1 cut(s) 502
PciSI GCTCTTC 1 cut(s) 345
PctI GAATGC 1 cut(s) 550
PkrI GCNGC 3 cut(s) 346, 389, 392
Ple19I CGATCG 1 cut(s) 16
PleI GAGTC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 384
Psp6I CCWGG 1 cut(s) 518
PspGI CCWGG 1 cut(s) 518
PspN4I GGNNCC 1 cut(s) 569
PspPI GGNCC 2 cut(s) 289, 338
PstNI CAGNNNCTG 1 cut(s) 347
PsuI RGATCY 3 cut(s) 532, 567, 576
PvuI CGATCG 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 344
SapI GCTCTTC 1 cut(s) 345
SaqAI TTAA 2 cut(s) 113, 552
SatI GCNGC 3 cut(s) 345, 388, 391
Sau3AI GATC 4 cut(s) 13, 532, 567, 576
Sau96I GGNCC 2 cut(s) 289, 338
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 520
SinI GGWCC 2 cut(s) 289, 338
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
SseBI AGGCCT 1 cut(s) 502
SsiI CCGC 2 cut(s) 258, 391
SspI AATATT 2 cut(s) 174, 470
SspMI CTAG 1 cut(s) 255
StuI AGGCCT 1 cut(s) 502
StyD4I CCNGG 1 cut(s) 518
TaaI ACNGT 2 cut(s) 29, 188
TaqI TCGA 1 cut(s) 154
TauI GCSGC 1 cut(s) 393
Tru1I TTAA 2 cut(s) 113, 552
Tru9I TTAA 2 cut(s) 113, 552
TscAI CASTG 3 cut(s) 39, 44, 52
TseI GCWGC 2 cut(s) 344, 387
TspDTI ATGAA 1 cut(s) 447
TspRI CASTG 3 cut(s) 39, 44, 52
Vha464I CTTAAG 1 cut(s) 112
VpaK11BI GGWCC 2 cut(s) 289, 338
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.