Rmu_sc0009186.1_g000003

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009186.1
OG0000179
Physical Location & Seq
Forward (+)
9338 .. 10166
829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009186.1_g000003.1.cds

Sequence Viewer

Length: 654 bp
atgcgtgttccttctgcagcggaacttgaggctacaggaaaggaacatccaatgcaaagaatgactcactgcaagttgaccctacaggtgcatcctcccaagcctctgaacaccatagccttttttgaggcctctcttggtggagctgctattatagatgctagtcaaagacttcgtgatattcatcaacaagctactaccgcactgatagctgagcttagcctttatgggattgatccttcattcgtaaggggcaaagttgagggattgttgactagtgctgacccatacaacttggcacggcttgcttgttcacgcaaggctactccaggcacacgtaatcaacgtctggctgatacagagtcaaaaattgcaaaggtcacttcaattcctcaagctgactctgatcatcaccaatctgcactcaagtttttggagaaattaaaggaggaacaactaaaattggagcaaacagtgacttcactagacgagagacttctactacaggagaagaagcttgttgacttagaaaaagagaagactcaaatcaaagagacccccgaggtgaccactgcagagcttgagatgaaaaaatcattgcgagatatttttgagagccaccacaatagcttcaagggtttaacttgggtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

217

Amino Acids

24.29

Weight (kDa)

7.1

Isoelectric Point (pI)

20.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 20, 201
AclWI GGATC 1 cut(s) 230
AflIII ACRYGT 1 cut(s) 335
AgsI TTSAA 2 cut(s) 387, 634
AhlI ACTAGT 1 cut(s) 275
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 8 cut(s) 146, 194, 212, 217, 398, 517, 580, 630
AluI AGCT 8 cut(s) 146, 194, 212, 217, 398, 517, 580, 630
Alw26I GTCTC 2 cut(s) 487, 548
AlwI GGATC 1 cut(s) 230
Ama87I CYCGRG 1 cut(s) 560
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 2 cut(s) 17, 146
AsuHPI GGTGA 2 cut(s) 404, 577
AvaI CYCGRG 1 cut(s) 560
BbsI GAAGAC 1 cut(s) 545
BbvI GCAGC 2 cut(s) 29, 133
BceAI ACGGC 1 cut(s) 317
BciT130I CCWGG 1 cut(s) 330
BclI TGATCA 1 cut(s) 406
BcoDI GTCTC 2 cut(s) 487, 548
BcuI ACTAGT 1 cut(s) 275
BfaI CTAG 3 cut(s) 162, 276, 485
BfmI CTRYAG 5 cut(s) 15, 33, 83, 503, 573
BisI GCNGC 2 cut(s) 18, 147
BlpI GCTNAGC 2 cut(s) 213, 218
BlsI GCNGC 2 cut(s) 19, 148
Bme1390I CCNGG 1 cut(s) 330
BmeT110I CYCGRG 1 cut(s) 560
BmrFI CCNGG 1 cut(s) 330
BmsI GCATC 2 cut(s) 100, 148
BpiI GAAGAC 1 cut(s) 545
BpmI CTGGAG 1 cut(s) 312
Bpu1102I GCTNAGC 2 cut(s) 213, 218
BpuEI CTTGAG 4 cut(s) 47, 378, 410, 602
BsaAI YACGTR 1 cut(s) 338
BsaBI GATNNNNATC 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 1 cut(s) 561
Bse3DI GCAATG 1 cut(s) 596
Bse8I GATNNNNATC 1 cut(s) 183
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 561
BseGI GGATG 2 cut(s) 46, 91
BseJI GATNNNNATC 1 cut(s) 183
BseMI GCAATG 1 cut(s) 596
BseMII CTCAG 1 cut(s) 204
BseXI GCAGC 2 cut(s) 29, 133
BsgI GTGCAG 1 cut(s) 405
BshFI GGCC 1 cut(s) 131
BsiHKCI CYCGRG 1 cut(s) 560
BsmAI GTCTC 2 cut(s) 487, 548
BsnI GGCC 1 cut(s) 131
Bso31I GGTCTC 1 cut(s) 548
BsoBI CYCGRG 1 cut(s) 560
Bsp143I GATC 2 cut(s) 235, 406
Bsp1720I GCTNAGC 2 cut(s) 213, 218
BspACI CCGC 2 cut(s) 20, 201
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 1 cut(s) 205
BspMAI CTGCAG 2 cut(s) 19, 577
BspPI GGATC 1 cut(s) 230
BspTNI GGTCTC 1 cut(s) 548
BsrDI GCAATG 1 cut(s) 596
BssECI CCNNGG 1 cut(s) 561
BssMI GATC 2 cut(s) 235, 406
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 475
BstAPI GCANNNNNTGC 1 cut(s) 305
BstBAI YACGTR 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 3 cut(s) 213, 218, 526
BstEII GGTNACC 1 cut(s) 565
BstF5I GGATG 2 cut(s) 46, 91
BstKTI GATC 2 cut(s) 238, 409
BstMAI GTCTC 2 cut(s) 487, 548
BstMBI GATC 2 cut(s) 235, 406
BstMWI GCNNNNNNNGC 3 cut(s) 200, 209, 305
BstNI CCWGG 1 cut(s) 330
BstPI GGTNACC 1 cut(s) 565
BstSCI CCNGG 1 cut(s) 328
BstSFI CTRYAG 5 cut(s) 15, 33, 83, 503, 573
BstV1I GCAGC 2 cut(s) 29, 133
BstV2I GAAGAC 1 cut(s) 545
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 2 cut(s) 46, 91
BtsI GCAGTG 2 cut(s) 67, 570
BtsIMutI CAGTG 4 cut(s) 67, 203, 480, 570
Cac8I GCNNGC 1 cut(s) 306
DdeI CTNAG 3 cut(s) 213, 218, 526
DpnI GATC 2 cut(s) 237, 408
DpnII GATC 2 cut(s) 235, 406
Eco147I AGGCCT 1 cut(s) 131
Eco31I GGTCTC 1 cut(s) 548
Eco88I CYCGRG 1 cut(s) 560
Eco91I GGTNACC 1 cut(s) 565
EcoO65I GGTNACC 1 cut(s) 565
EcoRII CCWGG 1 cut(s) 328
FaiI YATR 4 cut(s) 116, 155, 228, 289
FbaI TGATCA 1 cut(s) 406
Fnu4HI GCNGC 2 cut(s) 18, 147
FokI GGATG 2 cut(s) 33, 78
Fsp4HI GCNGC 2 cut(s) 18, 147
FspBI CTAG 3 cut(s) 162, 276, 485
GluI GCNGC 2 cut(s) 18, 147
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 1 cut(s) 131
HincII GTYRAC 3 cut(s) 78, 273, 523
HindII GTYRAC 3 cut(s) 78, 273, 523
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 4 cut(s) 64, 362, 401, 541
HphI GGTGA 2 cut(s) 404, 577
Hpy166II GTNNAC 4 cut(s) 78, 273, 314, 523
Hpy188I TCNGA 2 cut(s) 108, 406
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 4 cut(s) 78, 273, 314, 523
HpyAV CCTTC 2 cut(s) 21, 249
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4IV ACGT 2 cut(s) 337, 346
HpyCH4V TGCA 7 cut(s) 17, 55, 72, 91, 374, 422, 575
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 209, 305
HpyF3I CTNAG 3 cut(s) 213, 218, 526
HpySE526I ACGT 2 cut(s) 337, 346
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 2 cut(s) 235, 406
LmnI GCTCC 2 cut(s) 143, 466
LpnPI CCDG 6 cut(s) 21, 71, 315, 335, 342, 491
Lsp1109I GCAGC 2 cut(s) 29, 133
LweI GCATC 2 cut(s) 100, 148
MaeI CTAG 3 cut(s) 162, 276, 485
MaeII ACGT 2 cut(s) 337, 346
MaeIII GTNAC 3 cut(s) 379, 475, 565
MalI GATC 2 cut(s) 237, 408
MboI GATC 2 cut(s) 235, 406
MboII GAAGA 2 cut(s) 523, 550
MluCI AATT 4 cut(s) 369, 387, 440, 461
MlyI GAGTC 4 cut(s) 58, 371, 395, 535
MnlI CCTC 9 cut(s) 22, 105, 114, 121, 142, 256, 402, 442, 556
MseI TTAA 2 cut(s) 443, 641
MspA1I CMGCKG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 330
MvaI CCWGG 1 cut(s) 330
MwoI GCNNNNNNNGC 3 cut(s) 200, 209, 305
NdeII GATC 2 cut(s) 235, 406
NmuCI GTSAC 3 cut(s) 379, 475, 565
PceI AGGCCT 1 cut(s) 131
PcsI WCGNNNNNNNCGW 1 cut(s) 343
PkrI GCNGC 2 cut(s) 19, 148
PleI GAGTC 4 cut(s) 58, 370, 395, 535
PpsI GAGTC 4 cut(s) 58, 370, 395, 535
Ppu21I YACGTR 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 328
PspEI GGTNACC 1 cut(s) 565
PspGI CCWGG 1 cut(s) 328
PstI CTGCAG 2 cut(s) 19, 577
SaqAI TTAA 2 cut(s) 443, 641
SatI GCNGC 2 cut(s) 18, 147
Sau3AI GATC 2 cut(s) 235, 406
SchI GAGTC 4 cut(s) 58, 371, 395, 535
ScrFI CCNGG 1 cut(s) 330
SfaNI GCATC 2 cut(s) 100, 148
SfcI CTRYAG 5 cut(s) 15, 33, 83, 503, 573
SmlI CTYRAG 4 cut(s) 26, 393, 425, 581
SmoI CTYRAG 4 cut(s) 26, 393, 425, 581
SpeI ACTAGT 1 cut(s) 275
Sse9I AATT 4 cut(s) 369, 387, 440, 461
SseBI AGGCCT 1 cut(s) 131
SsiI CCGC 2 cut(s) 20, 201
SspMI CTAG 3 cut(s) 162, 276, 485
StuI AGGCCT 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 328
TaaI ACNGT 1 cut(s) 475
TaiI ACGT 2 cut(s) 340, 349
TasI AATT 4 cut(s) 369, 387, 440, 461
Tru1I TTAA 2 cut(s) 443, 641
Tru9I TTAA 2 cut(s) 443, 641
TscAI CASTG 4 cut(s) 74, 210, 480, 577
TseFI GTSAC 3 cut(s) 379, 475, 565
TseI GCWGC 2 cut(s) 17, 146
Tsp45I GTSAC 3 cut(s) 379, 475, 565
TspDTI ATGAA 3 cut(s) 173, 231, 602
TspRI CASTG 4 cut(s) 74, 210, 480, 577
XspI CTAG 3 cut(s) 162, 276, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.