Rh1BG038100

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000179
Physical Location & Seq
Reverse (-)
5086727 .. 5088862
2136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG038100.1

Sequence Viewer

Length: 762 bp
ATGAAAGAGGAAGGGGACAAATCAGAATCCGTACATGCTTCATGTCCTGGCTTTGGAAGGTTTTGTATGAGGCAAAGTTCAATGGAACACACCAATAAGATATCCCCTTCCAAGGAAGTTTCATCTGACAGAAACAATAATATTGATGCAGAGCATATTATCTCTAAAATTCGCCGCAAAGCAACGTCGAAGTTGTTGGAACACATCCAGAAGATTGTGTTACAGAATCCCATAGAGCGCCTTCCACTATTCAAAGTAGAACTTGAAAAACTCATCGCTGCCTTTACCGAGTATGGGATTGATCCTTCACCATTAAAGGTCAAGGTTGACAAGCTCATGATGGATATTGCTAATTACAATTCCATGCAGTCTGCTTGCTCCGGGAAGATAGCTCCAGAGGTACAGCATCAGCGGTTGGCTGACAATAAATCTCGTCTTGACAGAGCCTTTAATCTTCAAACAGCTGAAAAATGTCACTATGAATCGCTACTTGACTTCCTAGCCTCTTCAGAGAATCGTAGAGAGAAGCTGAAAAGAGAGCAAGAACGATTGGAGGAGCGGATAGACAAGCTTCGTGTTTCCATCTCAGGAAGTGAGTTAAAGATAGCTGAACATAAAAATGCAGTTGATCGGTTGCTGAAACAGAAAGTCGAAATTTCAAACACTCCCGTATTGACTTCTAAAGATGCTAAAACTTTGAAGAATCTGAAAGATTCACTCGAGGGTCAGTGCAAAGGCTTCAAGGACTTTACTTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

253

Amino Acids

28.92

Weight (kDa)

9.16

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 559
AciI CCGC 3 cut(s) 175, 412, 559
AclWI GGATC 1 cut(s) 296
AcsI RAATTY 2 cut(s) 168, 654
AcuI CTGAAG 1 cut(s) 492
AfaI GTAC 2 cut(s) 33, 402
AfiI CCNNNNNNNGG 3 cut(s) 53, 112, 294
AgsI TTSAA 7 cut(s) 81, 253, 266, 458, 660, 700, 742
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 6 cut(s) 334, 392, 464, 529, 571, 608
AluI AGCT 6 cut(s) 334, 392, 464, 529, 571, 608
AlwI GGATC 1 cut(s) 296
Ama87I CYCGRG 1 cut(s) 719
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 2 cut(s) 168, 654
AspLEI GCGC 1 cut(s) 240
AsuC2I CCSGG 1 cut(s) 382
AsuHPI GGTGA 1 cut(s) 300
AvaI CYCGRG 1 cut(s) 719
BbvI GCAGC 1 cut(s) 265
BccI CCATC 2 cut(s) 334, 590
BciT130I CCWGG 1 cut(s) 48
BcnI CCSGG 1 cut(s) 382
BfaI CTAG 1 cut(s) 500
BfoI RGCGCY 1 cut(s) 241
BisI GCNGC 2 cut(s) 175, 279
BlsI GCNGC 2 cut(s) 176, 280
Bme1390I CCNGG 2 cut(s) 48, 382
BmeT110I CYCGRG 1 cut(s) 719
BmrFI CCNGG 2 cut(s) 48, 382
BmsI GCATC 3 cut(s) 136, 415, 676
BpmI CTGGAG 1 cut(s) 378
BpuMI CCSGG 1 cut(s) 382
BsaJI CCNNGG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 112, 294
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 204
BseLI CCNNNNNNNGG 3 cut(s) 53, 112, 294
BseMII CTCAG 1 cut(s) 600
BseRI GAGGAG 1 cut(s) 569
BseXI GCAGC 1 cut(s) 265
BsiHKCI CYCGRG 1 cut(s) 719
BsiSI CCGG 1 cut(s) 381
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 3 cut(s) 53, 112, 294
BsmFI GGGAC 1 cut(s) 29
BsoBI CYCGRG 1 cut(s) 719
Bsp143I GATC 2 cut(s) 301, 628
BspACI CCGC 3 cut(s) 175, 412, 559
BspCNI CTCAG 1 cut(s) 599
BspHI TCATGA 1 cut(s) 336
BspPI GGATC 1 cut(s) 296
BsrBI CCGCTC 1 cut(s) 559
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 2 cut(s) 301, 628
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 48
Bst6I CTCTTC 1 cut(s) 511
BstC8I GCNNGC 1 cut(s) 376
BstDEI CTNAG 1 cut(s) 586
BstF5I GGATG 1 cut(s) 204
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 2 cut(s) 304, 631
BstMBI GATC 2 cut(s) 301, 628
BstNI CCWGG 1 cut(s) 48
BstNSI RCATGY 1 cut(s) 38
BstSCI CCNGG 2 cut(s) 46, 380
BstV1I GCAGC 1 cut(s) 265
BtgZI GCGATG 1 cut(s) 259
BtsCI GGATG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 734
Cac8I GCNNGC 1 cut(s) 376
CciI TCATGA 1 cut(s) 336
CfoI GCGC 1 cut(s) 240
Csp6I GTAC 2 cut(s) 32, 401
CviAII CATG 4 cut(s) 35, 42, 337, 364
CviQI GTAC 2 cut(s) 32, 401
DdeI CTNAG 1 cut(s) 586
DpnI GATC 2 cut(s) 303, 630
DpnII GATC 2 cut(s) 301, 628
Eam1104I CTCTTC 1 cut(s) 511
EarI CTCTTC 1 cut(s) 511
Eco130I CCWWGG 1 cut(s) 111
Eco32I GATATC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 492
Eco88I CYCGRG 1 cut(s) 719
EcoRII CCWGG 1 cut(s) 46
EcoRV GATATC 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 4 cut(s) 38, 45, 340, 367
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 1 cut(s) 29
FatI CATG 4 cut(s) 34, 41, 336, 363
Fnu4HI GCNGC 2 cut(s) 175, 279
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 2 cut(s) 175, 279
FspBI CTAG 1 cut(s) 500
GlaI GCGC 1 cut(s) 239
GluI GCNGC 2 cut(s) 175, 279
GsuI CTGGAG 1 cut(s) 378
HaeII RGCGCY 1 cut(s) 241
HapII CCGG 1 cut(s) 381
HhaI GCGC 1 cut(s) 240
Hin1II CATG 4 cut(s) 38, 45, 340, 367
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 569
HinfI GANTC 6 cut(s) 26, 226, 482, 514, 703, 713
HpaII CCGG 1 cut(s) 381
HphI GGTGA 1 cut(s) 300
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 4 cut(s) 25, 127, 511, 708
Hpy188III TCNNGA 5 cut(s) 208, 337, 395, 437, 588
Hpy8I GTNNAC 1 cut(s) 328
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 5 cut(s) 5, 51, 117, 251, 315
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 4 cut(s) 149, 367, 623, 732
HpyF3I CTNAG 1 cut(s) 586
HpySE526I ACGT 1 cut(s) 185
Hsp92II CATG 4 cut(s) 38, 45, 340, 367
HspAI GCGC 1 cut(s) 238
Kzo9I GATC 2 cut(s) 301, 628
LmnI GCTCC 3 cut(s) 383, 397, 556
LpnPI CCDG 6 cut(s) 33, 60, 221, 394, 408, 573
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 3 cut(s) 136, 415, 676
MaeI CTAG 1 cut(s) 500
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 2 cut(s) 219, 473
MalI GATC 2 cut(s) 303, 630
MbiI CCGCTC 1 cut(s) 559
MboI GATC 2 cut(s) 301, 628
MboII GAAGA 5 cut(s) 223, 397, 446, 498, 712
MluCI AATT 4 cut(s) 168, 352, 358, 654
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 6 cut(s) 63, 391, 514, 547, 715, 750
MseI TTAA 3 cut(s) 314, 450, 599
MslI CAYNNNNRTG 1 cut(s) 618
MspA1I CMGCKG 2 cut(s) 412, 464
MspI CCGG 1 cut(s) 381
MspR9I CCNGG 2 cut(s) 48, 382
MvaI CCWGG 1 cut(s) 48
NciI CCSGG 1 cut(s) 382
NdeII GATC 2 cut(s) 301, 628
NlaIII CATG 4 cut(s) 38, 45, 340, 367
NmuCI GTSAC 1 cut(s) 473
NspI RCATGY 1 cut(s) 38
PaeR7I CTCGAG 1 cut(s) 719
PagI TCATGA 1 cut(s) 336
PfeI GAWTC 6 cut(s) 26, 226, 482, 514, 703, 713
PfoI TCCNGGA 1 cut(s) 380
PkrI GCNGC 2 cut(s) 176, 280
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspXI VCTCGAGB 1 cut(s) 719
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 2 cut(s) 33, 402
RsaNI GTAC 2 cut(s) 32, 401
RseI CAYNNNNRTG 1 cut(s) 618
SaqAI TTAA 3 cut(s) 314, 450, 599
SatI GCNGC 2 cut(s) 175, 279
Sau3AI GATC 2 cut(s) 301, 628
ScrFI CCNGG 2 cut(s) 48, 382
SfaNI GCATC 3 cut(s) 136, 415, 676
Sfr274I CTCGAG 1 cut(s) 719
SlaI CTCGAG 1 cut(s) 719
SmiMI CAYNNNNRTG 1 cut(s) 618
SmlI CTYRAG 1 cut(s) 719
SmoI CTYRAG 1 cut(s) 719
Sse9I AATT 4 cut(s) 168, 352, 358, 654
SsiI CCGC 3 cut(s) 175, 412, 559
SspI AATATT 1 cut(s) 142
SspMI CTAG 1 cut(s) 500
StyD4I CCNGG 2 cut(s) 46, 380
StyI CCWWGG 1 cut(s) 111
TaiI ACGT 1 cut(s) 188
TaqI TCGA 3 cut(s) 188, 651, 720
TasI AATT 4 cut(s) 168, 352, 358, 654
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 6 cut(s) 26, 226, 482, 514, 703, 713
Tru1I TTAA 3 cut(s) 314, 450, 599
Tru9I TTAA 3 cut(s) 314, 450, 599
TscAI CASTG 1 cut(s) 734
TseFI GTSAC 1 cut(s) 473
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 473
TspDTI ATGAA 4 cut(s) 17, 30, 111, 495
TspGWI ACGGA 1 cut(s) 19
TspRI CASTG 1 cut(s) 734
XapI RAATTY 2 cut(s) 168, 654
XceI RCATGY 1 cut(s) 38
XhoI CTCGAG 1 cut(s) 719
XspI CTAG 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.