Rmu_sc0000670.1_g000021

Galactose oxidase, central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000670.1
OG0000179
Physical Location & Seq
Forward (+)
87359 .. 87754
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000670.1_g000021.1.cds

Sequence Viewer

Length: 396 bp
atgatttggctgcgggctgggaccgtgcccaggcctaatattcgtcaacaagctgctactgcaatttgtgaacaaattgaatatatgataatgaagcactccccaaagagcattctttccagcaagggggaacttgacaagctgatagctgagcttaacctttatgggattgatccttcatccgtaagggacaaagtcgaaggattattgactagtgctgaccaatacaacttagcacggcttgcttgttcacgcaaggatactctagacacacgcaatcaacgtctggctgacataggatcaaaaattacaaaggtcatcttaattcgtcaagctgactctgatcatcgccaatctgcactcaagtctttggagaaattaaaagatgagcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04212 ko05168 map04212 map05168
Pfam Domains
Protein Families
Kelch_3 Kelch_4 Kelch_5

Protein Analysis

131

Amino Acids

14.75

Weight (kDa)

9.17

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 13
AclWI GGATC 2 cut(s) 167, 307
AfiI CCNNNNNNNGG 2 cut(s) 30, 126
AgsI TTSAA 1 cut(s) 80
AhlI ACTAGT 1 cut(s) 212
AjnI CCWGG 1 cut(s) 29
AluBI AGCT 5 cut(s) 53, 142, 149, 154, 335
AluI AGCT 5 cut(s) 53, 142, 149, 154, 335
AlwI GGATC 2 cut(s) 167, 307
AoxI GGCC 1 cut(s) 32
ApeKI GCWGC 2 cut(s) 10, 53
AspS9I GGNCC 1 cut(s) 21
AvaII GGWCC 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 40
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 31
BciVI GTATCC 1 cut(s) 253
BclI TGATCA 1 cut(s) 343
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 2 cut(s) 213, 266
BfuI GTATCC 1 cut(s) 253
BisI GCNGC 2 cut(s) 11, 54
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 2 cut(s) 12, 55
Bme1390I CCNGG 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 31
Bpu1102I GCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 29
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 126
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 1 cut(s) 179
BseLI CCNNNNNNNGG 2 cut(s) 30, 126
BseMII CTCAG 1 cut(s) 141
BseSI GKGCMC 1 cut(s) 30
BseXI GCAGC 1 cut(s) 40
BseYI CCCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 342
BshFI GGCC 1 cut(s) 34
BslFI GGGAC 2 cut(s) 34, 203
BslI CCNNNNNNNGG 2 cut(s) 30, 126
BsmFI GGGAC 2 cut(s) 34, 203
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 3 cut(s) 172, 299, 343
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 1 cut(s) 13
BspANI GGCC 1 cut(s) 34
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 22
BspPI GGATC 2 cut(s) 167, 307
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 3 cut(s) 172, 299, 343
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 1 cut(s) 25
BstAPI GCANNNNNTGC 1 cut(s) 242
BstC8I GCNNGC 2 cut(s) 15, 243
BstDEI CTNAG 2 cut(s) 150, 232
BstF5I GGATG 1 cut(s) 179
BstKTI GATC 3 cut(s) 175, 302, 346
BstMBI GATC 3 cut(s) 172, 299, 343
BstMWI GCNNNNNNNGC 2 cut(s) 59, 242
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 29
BstSLI GKGCMC 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 40
BsuI GTATCC 1 cut(s) 253
BsuRI GGCC 1 cut(s) 34
BtgZI GCGATG 1 cut(s) 332
BtsCI GGATG 1 cut(s) 179
Cac8I GCNNGC 2 cut(s) 15, 243
Cfr13I GGNCC 1 cut(s) 21
DdeI CTNAG 2 cut(s) 150, 232
DpnI GATC 3 cut(s) 174, 301, 345
DpnII GATC 3 cut(s) 172, 299, 343
Eco147I AGGCCT 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 29
FaiI YATR 4 cut(s) 84, 86, 165, 296
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FaqI GGGAC 2 cut(s) 34, 203
FauI CCCGC 1 cut(s) 6
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 2 cut(s) 11, 54
FokI GGATG 1 cut(s) 166
Fsp4HI GCNGC 2 cut(s) 11, 54
FspBI CTAG 2 cut(s) 213, 266
GluI GCNGC 2 cut(s) 11, 54
GsaI CCCAGC 1 cut(s) 21
HaeIII GGCC 1 cut(s) 34
HincII GTYRAC 1 cut(s) 47
HindII GTYRAC 1 cut(s) 47
HinfI GANTC 1 cut(s) 338
Hpy166II GTNNAC 3 cut(s) 47, 71, 251
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 3 cut(s) 47, 71, 251
HpyAV CCTTC 2 cut(s) 186, 194
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 2 cut(s) 62, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 242
HpyF3I CTNAG 2 cut(s) 150, 232
HpySE526I ACGT 1 cut(s) 283
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 3 cut(s) 172, 299, 343
LpnPI CCDG 5 cut(s) 3, 16, 43, 133, 272
Lsp1109I GCAGC 1 cut(s) 40
MaeI CTAG 2 cut(s) 213, 266
MaeII ACGT 1 cut(s) 283
MalI GATC 3 cut(s) 174, 301, 345
MboI GATC 3 cut(s) 172, 299, 343
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 5 cut(s) 63, 75, 306, 324, 377
MlyI GAGTC 1 cut(s) 332
MseI TTAA 3 cut(s) 156, 323, 380
MspR9I CCNGG 1 cut(s) 31
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 1 cut(s) 31
MwoI GCNNNNNNNGC 2 cut(s) 59, 242
NdeII GATC 3 cut(s) 172, 299, 343
NlaIV GGNNCC 1 cut(s) 22
PceI AGGCCT 1 cut(s) 34
PcsI WCGNNNNNNNCGW 1 cut(s) 280
PctI GAATGC 1 cut(s) 111
PflFI GACNNNGTC 1 cut(s) 194
PkrI GCNGC 2 cut(s) 12, 55
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 29
PspFI CCCAGC 1 cut(s) 17
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 1 cut(s) 21
PsyI GACNNNGTC 1 cut(s) 194
SaqAI TTAA 3 cut(s) 156, 323, 380
SatI GCNGC 2 cut(s) 11, 54
Sau3AI GATC 3 cut(s) 172, 299, 343
Sau96I GGNCC 1 cut(s) 21
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 1 cut(s) 31
SduI GDGCHC 1 cut(s) 30
SetI ASST 8 cut(s) 55, 144, 151, 156, 162, 286, 318, 337
SinI GGWCC 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SpeI ACTAGT 1 cut(s) 212
Sse9I AATT 5 cut(s) 63, 75, 306, 324, 377
SseBI AGGCCT 1 cut(s) 34
SsiI CCGC 1 cut(s) 13
SspI AATATT 1 cut(s) 40
SspMI CTAG 2 cut(s) 213, 266
StuI AGGCCT 1 cut(s) 34
StyD4I CCNGG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 25
TaiI ACGT 1 cut(s) 286
TaqI TCGA 1 cut(s) 198
TasI AATT 5 cut(s) 63, 75, 306, 324, 377
Tru1I TTAA 3 cut(s) 156, 323, 380
Tru9I TTAA 3 cut(s) 156, 323, 380
TseI GCWGC 2 cut(s) 10, 53
TspDTI ATGAA 2 cut(s) 107, 168
TspGWI ACGGA 1 cut(s) 172
Tth111I GACNNNGTC 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 21
XbaI TCTAGA 1 cut(s) 265
XspI CTAG 2 cut(s) 213, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.