FvH4_4g15163

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000179
Physical Location & Seq
Reverse (-)
18743782 .. 18744201
420 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15163.t1

Sequence Viewer

Length: 420 bp
ATGTTGCCACCTGAGAATGCTCTAACAGAGTATATGGTGACTCGTGGTTATGTTGAATGGTGGTCTAAAGTATATTGCTCCACGCCCAGGAAAACTACAGCAGAAATACCTGTTGGCGGGTCACAGCACAAGCCTCTAAAAGTGAAAGAAGACAAGATTGTCACTCGCACGGCGCCACCTCGTCAAAAAGTGGTTCCTCGTGAAGTTGAAGTTGACAACAACCCTCATGCATCTTTCATCAAGGCGTTGCCCCCAAGTAGTAGCCCTCCGAATGAGCAGCATCAAACTCTAGAAGGTCATGGGGACTCATCCGATCATCGTCTTGCCCAGAGTAACCTTAAGCTGAAGGGGATTGACACCCGAGCAAAAAGGTTTAGTGGAAATAGTAACAGCTCCAGCGACGTGAACTTCAAACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.55

Weight (kDa)

9.59

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 172
AciI CCGC 1 cut(s) 117
AclI AACGTT 1 cut(s) 415
AcuI CTGAAG 1 cut(s) 365
AcyI GRCGYC 1 cut(s) 173
AfiI CCNNNNNNNGG 2 cut(s) 87, 116
AflII CTTAAG 1 cut(s) 338
AgsI TTSAA 3 cut(s) 56, 209, 412
AjiI CACGTC 1 cut(s) 403
AjnI CCWGG 1 cut(s) 86
AjuI GAANNNNNNNTTGG 2 cut(s) 96, 128
AluBI AGCT 2 cut(s) 343, 393
AluI AGCT 2 cut(s) 343, 393
Ama87I CYCGRG 1 cut(s) 360
ApeKI GCWGC 1 cut(s) 277
AspLEI GCGC 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 49
AvaI CYCGRG 1 cut(s) 360
BanI GGYRCC 1 cut(s) 172
BauI CACGAG 2 cut(s) 42, 198
BbsI GAAGAC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 289
BceAI ACGGC 1 cut(s) 186
BciT130I CCWGG 1 cut(s) 88
BfaI CTAG 1 cut(s) 290
BfmI CTRYAG 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 176
BfrI CTTAAG 1 cut(s) 338
BisI GCNGC 1 cut(s) 278
BlsI GCNGC 1 cut(s) 279
Bme1390I CCNGG 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 360
BmgBI CACGTC 1 cut(s) 403
BmiI GGNNCC 2 cut(s) 174, 195
BmrFI CCNGG 1 cut(s) 88
BmsI GCATC 2 cut(s) 239, 289
BpiI GAAGAC 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 379
BsaHI GRCGYC 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 86
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 116
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 86
BseGI GGATG 1 cut(s) 308
BseLI CCNNNNNNNGG 2 cut(s) 87, 116
BseXI GCAGC 1 cut(s) 289
BshNI GGYRCC 1 cut(s) 172
BsiHKCI CYCGRG 1 cut(s) 360
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 2 cut(s) 87, 116
BsmFI GGGAC 1 cut(s) 317
BsmI GAATGC 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 360
Bsp143I GATC 1 cut(s) 313
BspACI CCGC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 4
BspLI GGNNCC 2 cut(s) 174, 195
BspT107I GGYRCC 1 cut(s) 172
BspTI CTTAAG 1 cut(s) 338
BssECI CCNNGG 1 cut(s) 86
BssMI GATC 1 cut(s) 313
BssNI GRCGYC 1 cut(s) 173
BssSI CACGAG 2 cut(s) 42, 198
Bst2BI CACGAG 2 cut(s) 42, 198
Bst2UI CCWGG 1 cut(s) 88
BstACI GRCGYC 1 cut(s) 173
BstAFI CTTAAG 1 cut(s) 338
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 308
BstH2I RGCGCY 1 cut(s) 176
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 1 cut(s) 316
BstMBI GATC 1 cut(s) 313
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 289
BstV2I GAAGAC 1 cut(s) 156
BtrI CACGTC 1 cut(s) 403
BtsCI GGATG 1 cut(s) 308
CfoI GCGC 1 cut(s) 175
CviAII CATG 2 cut(s) 227, 299
CviJI RGCY 4 cut(s) 133, 264, 343, 393
CviKI_1 RGCY 4 cut(s) 133, 264, 343, 393
DdeI CTNAG 1 cut(s) 12
DinI GGCGCC 1 cut(s) 174
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 365
Eco88I CYCGRG 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 86
EcoT22I ATGCAT 1 cut(s) 232
EgeI GGCGCC 1 cut(s) 174
EheI GGCGCC 1 cut(s) 174
FaeI CATG 2 cut(s) 230, 302
FaiI YATR 6 cut(s) 33, 35, 51, 73, 228, 300
FaqI GGGAC 1 cut(s) 317
FatI CATG 2 cut(s) 226, 298
FauI CCCGC 1 cut(s) 110
Fnu4HI GCNGC 1 cut(s) 278
FokI GGATG 1 cut(s) 295
Fsp4HI GCNGC 1 cut(s) 278
FspBI CTAG 1 cut(s) 290
GlaI GCGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 278
GsuI CTGGAG 1 cut(s) 379
HaeII RGCGCY 1 cut(s) 176
HhaI GCGC 1 cut(s) 175
Hin1I GRCGYC 1 cut(s) 173
Hin1II CATG 2 cut(s) 230, 302
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 2 cut(s) 40, 305
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 2 cut(s) 214, 406
Hpy188I TCNGA 2 cut(s) 270, 313
Hpy188III TCNNGA 2 cut(s) 200, 290
Hpy8I GTNNAC 2 cut(s) 214, 406
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 2 cut(s) 287, 340
HpyCH4IV ACGT 2 cut(s) 402, 415
HpyCH4V TGCA 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 2 cut(s) 402, 415
Hsp92I GRCGYC 1 cut(s) 173
Hsp92II CATG 2 cut(s) 230, 302
HspAI GCGC 1 cut(s) 173
KasI GGCGCC 1 cut(s) 172
Kzo9I GATC 1 cut(s) 313
LmnI GCTCC 2 cut(s) 83, 398
LpnPI CCDG 6 cut(s) 24, 73, 100, 123, 341, 409
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 2 cut(s) 239, 289
MaeI CTAG 1 cut(s) 290
MaeII ACGT 2 cut(s) 402, 415
MaeIII GTNAC 5 cut(s) 37, 120, 160, 332, 386
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 1 cut(s) 161
Mly113I GGCGCC 1 cut(s) 173
MlyI GAGTC 2 cut(s) 34, 299
MnlI CCTC 5 cut(s) 144, 189, 207, 234, 276
Mph1103I ATGCAT 1 cut(s) 232
MseI TTAA 1 cut(s) 339
MspCI CTTAAG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 88
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 1 cut(s) 88
NarI GGCGCC 1 cut(s) 173
NdeII GATC 1 cut(s) 313
NlaIII CATG 2 cut(s) 230, 302
NlaIV GGNNCC 2 cut(s) 174, 195
NmuCI GTSAC 3 cut(s) 37, 120, 160
NsiI ATGCAT 1 cut(s) 232
PctI GAATGC 1 cut(s) 22
PkrI GCNGC 1 cut(s) 279
PleI GAGTC 2 cut(s) 34, 299
PluTI GGCGCC 1 cut(s) 176
PpsI GAGTC 2 cut(s) 34, 299
Psp1406I AACGTT 1 cut(s) 415
Psp6I CCWGG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 2 cut(s) 174, 195
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 1 cut(s) 278
Sau3AI GATC 1 cut(s) 313
SchI GAGTC 2 cut(s) 34, 299
ScrFI CCNGG 1 cut(s) 88
SfaNI GCATC 2 cut(s) 239, 289
SfcI CTRYAG 1 cut(s) 96
SfoI GGCGCC 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
SsiI CCGC 1 cut(s) 117
SspDI GGCGCC 1 cut(s) 172
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 86
TaiI ACGT 2 cut(s) 405, 418
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TseFI GTSAC 3 cut(s) 37, 120, 160
TseI GCWGC 1 cut(s) 277
Tsp45I GTSAC 3 cut(s) 37, 120, 160
TspDTI ATGAA 1 cut(s) 226
Vha464I CTTAAG 1 cut(s) 338
XbaI TCTAGA 1 cut(s) 289
XspI CTAG 1 cut(s) 290
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.