Rmu_sc0001075.1_g000026

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001075.1
OG0000179
Physical Location & Seq
Reverse (-)
125847 .. 127017
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001075.1_g000026.1.cds

Sequence Viewer

Length: 948 bp
ctgaaaagacctgtcatcaaagaaagaaggcgtagtggaagcagcggtagcaatgatagtgaagtgcactttaagcgtcgaaaaactgacaccagccttggccctacttattgtgatcccaatgctgaatttactctgaataccgactttcttggtgatgttccaacttcttcacaactgatgctgcaacgtaatgagggtgcagggattgatggtcacccactttggggaaacgatgacgcctcttcaaaccctattcgtgttccttctgcagcggaacttgaggcttacgctttacccacggaaggaaaatccaatgcaatgaatgactcacagcaaattgaccctacaggtccacttaccatggtgcatcctcctaagcctctgaacaccatagccttttctgaggcctctcttggaggagctgctattatagatgccagccaaagacttccactcctccaagaccattctttccagcaaggggaacttgacaagctgatagctgagcttagccattatgggattgatccttcatccgtaaggggaaaagttgaaggattgttgactagtgctgaccaatacaacctgacacgactttcttgttcacgcaaggctactccaggcacacgtattcaacgtctagctgacacagagtctgaaattacgaaggtcacttcaattcgtcaagctgactctgatcatcgtcaatctgcactcaaatctttggagaaattaaaagaggagcaacgaaaattagagcaaacagtgactttactagacgagagacttctactacaggagaagaagcttgtcgacctagaaaaagcgaagactcaaatccaagagacccccgaggtgaccactgcagagcttgagacgacaaaatcattgcgggatacttttgagaaccaccgcaatagcttcaagggtttgacttgggtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

315

Amino Acids

34.87

Weight (kDa)

5.75

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 816
AciI CCGC 4 cut(s) 45, 275, 895, 916
AclWI GGATC 2 cut(s) 110, 524
AcsI RAATTY 1 cut(s) 128
AcyI GRCGYC 1 cut(s) 240
AfiI CCNNNNNNNGG 4 cut(s) 226, 227, 305, 484
AflIII ACRYGT 1 cut(s) 629
AgsI TTSAA 5 cut(s) 249, 557, 638, 681, 928
AhdI GACNNNNNGTC 1 cut(s) 655
AhlI ACTAGT 1 cut(s) 569
AjnI CCWGG 1 cut(s) 622
AluBI AGCT 9 cut(s) 425, 499, 506, 511, 647, 692, 811, 874, 924
AluI AGCT 9 cut(s) 425, 499, 506, 511, 647, 692, 811, 874, 924
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 3 cut(s) 781, 842, 872
Alw44I GTGCAC 1 cut(s) 65
AlwI GGATC 2 cut(s) 110, 524
AlwNI CAGNNNCTG 1 cut(s) 659
Ama87I CYCGRG 1 cut(s) 854
AoxI GGCC 2 cut(s) 100, 408
ApaLI GTGCAC 1 cut(s) 65
ApeKI GCWGC 4 cut(s) 42, 184, 272, 425
ApoI RAATTY 1 cut(s) 128
AspS9I GGNCC 2 cut(s) 101, 353
AsuHPI GGTGA 3 cut(s) 167, 209, 871
AvaI CYCGRG 1 cut(s) 854
AvaII GGWCC 1 cut(s) 353
BaeGI GKGCMC 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 839
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 4 cut(s) 54, 171, 284, 412
BccI CCATC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 624
BciVI GTATCC 1 cut(s) 892
BclI TGATCA 1 cut(s) 700
BcoDI GTCTC 3 cut(s) 781, 842, 872
BcuI ACTAGT 1 cut(s) 569
BfaI CTAG 4 cut(s) 570, 644, 779, 821
BfmI CTRYAG 4 cut(s) 270, 348, 797, 867
BfuI GTATCC 1 cut(s) 892
BisI GCNGC 4 cut(s) 43, 185, 273, 426
BlpI GCTNAGC 2 cut(s) 507, 512
BlsI GCNGC 4 cut(s) 44, 186, 274, 427
Bme1390I CCNGG 1 cut(s) 624
Bme18I GGWCC 1 cut(s) 353
BmeRI GACNNNNNGTC 1 cut(s) 655
BmeT110I CYCGRG 1 cut(s) 854
BmgT120I GGNCC 2 cut(s) 101, 353
BmrFI CCNGG 1 cut(s) 624
BmsI GCATC 3 cut(s) 171, 379, 427
BpiI GAAGAC 1 cut(s) 839
BpmI CTGGAG 1 cut(s) 606
Bpu10I CCTNAGC 1 cut(s) 378
Bpu1102I GCTNAGC 2 cut(s) 507, 512
BpuEI CTTGAG 2 cut(s) 302, 896
BsaAI YACGTR 1 cut(s) 632
BsaHI GRCGYC 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 842
BsaJI CCNNGG 4 cut(s) 97, 300, 363, 855
BsaXI ACNNNNNCTCC 2 cut(s) 441, 471
Bsc4I CCNNNNNNNGG 4 cut(s) 226, 227, 305, 484
Bse3DI GCAATG 3 cut(s) 58, 327, 890
BseBI CCWGG 1 cut(s) 624
BseDI CCNNGG 4 cut(s) 97, 300, 363, 855
BseGI GGATG 2 cut(s) 370, 536
BseLI CCNNNNNNNGG 4 cut(s) 226, 227, 305, 484
BseMI GCAATG 3 cut(s) 58, 327, 890
BseMII CTCAG 2 cut(s) 396, 498
BseRI GAGGAG 3 cut(s) 435, 449, 758
BseSI GKGCMC 1 cut(s) 69
BseXI GCAGC 4 cut(s) 54, 171, 284, 412
BsgI GTGCAG 2 cut(s) 222, 699
BshFI GGCC 2 cut(s) 102, 410
BsiHKAI GWGCWC 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 854
BslI CCNNNNNNNGG 4 cut(s) 226, 227, 305, 484
BsmAI GTCTC 3 cut(s) 781, 842, 872
BsmBI CGTCTC 1 cut(s) 872
BsnI GGCC 2 cut(s) 102, 410
Bso31I GGTCTC 1 cut(s) 842
BsoBI CYCGRG 1 cut(s) 854
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 3 cut(s) 115, 529, 700
Bsp1720I GCTNAGC 2 cut(s) 507, 512
Bsp19I CCATGG 1 cut(s) 363
BspACI CCGC 4 cut(s) 45, 275, 895, 916
BspANI GGCC 2 cut(s) 102, 410
BspCNI CTCAG 2 cut(s) 397, 499
BspMAI CTGCAG 2 cut(s) 274, 871
BspPI GGATC 2 cut(s) 110, 524
BspTNI GGTCTC 1 cut(s) 842
BsrDI GCAATG 3 cut(s) 58, 327, 890
BssECI CCNNGG 4 cut(s) 97, 300, 363, 855
BssMI GATC 3 cut(s) 115, 529, 700
BssNI GRCGYC 1 cut(s) 240
BssT1I CCWWGG 2 cut(s) 97, 363
Bst2UI CCWGG 1 cut(s) 624
Bst4CI ACNGT 1 cut(s) 769
Bst6I CTCTTC 1 cut(s) 250
BstACI GRCGYC 1 cut(s) 240
BstBAI YACGTR 1 cut(s) 632
BstC8I GCNNGC 1 cut(s) 442
BstDEI CTNAG 4 cut(s) 378, 405, 507, 512
BstDSI CCRYGG 2 cut(s) 300, 363
BstEII GGTNACC 2 cut(s) 215, 859
BstF5I GGATG 2 cut(s) 370, 536
BstKTI GATC 3 cut(s) 118, 532, 703
BstMAI GTCTC 3 cut(s) 781, 842, 872
BstMBI GATC 3 cut(s) 115, 529, 700
BstMWI GCNNNNNNNGC 2 cut(s) 48, 73
BstNI CCWGG 1 cut(s) 624
BstPI GGTNACC 2 cut(s) 215, 859
BstSCI CCNGG 1 cut(s) 622
BstSFI CTRYAG 4 cut(s) 270, 348, 797, 867
BstSLI GKGCMC 1 cut(s) 69
BstV1I GCAGC 4 cut(s) 54, 171, 284, 412
BstV2I GAAGAC 1 cut(s) 839
BsuI GTATCC 1 cut(s) 892
BsuRI GGCC 2 cut(s) 102, 410
BtgI CCRYGG 2 cut(s) 300, 363
BtsCI GGATG 2 cut(s) 370, 536
BtsI GCAGTG 1 cut(s) 864
BtsIMutI CAGTG 2 cut(s) 774, 864
Cac8I GCNNGC 1 cut(s) 442
CaiI CAGNNNCTG 1 cut(s) 659
Cfr13I GGNCC 2 cut(s) 101, 353
CseI GACGC 2 cut(s) 65, 248
CviAII CATG 1 cut(s) 364
DdeI CTNAG 4 cut(s) 378, 405, 507, 512
DpnI GATC 3 cut(s) 117, 531, 702
DpnII GATC 3 cut(s) 115, 529, 700
DriI GACNNNNNGTC 1 cut(s) 655
Eam1104I CTCTTC 1 cut(s) 250
Eam1105I GACNNNNNGTC 1 cut(s) 655
EarI CTCTTC 1 cut(s) 250
Eco130I CCWWGG 2 cut(s) 97, 363
Eco147I AGGCCT 1 cut(s) 410
Eco31I GGTCTC 1 cut(s) 842
Eco47I GGWCC 1 cut(s) 353
Eco88I CYCGRG 1 cut(s) 854
Eco91I GGTNACC 2 cut(s) 215, 859
EcoO65I GGTNACC 2 cut(s) 215, 859
EcoRII CCWGG 1 cut(s) 622
EcoT14I CCWWGG 2 cut(s) 97, 363
ErhI CCWWGG 2 cut(s) 97, 363
Esp3I CGTCTC 1 cut(s) 872
FaeI CATG 1 cut(s) 367
FaiI YATR 4 cut(s) 365, 395, 434, 522
FalI AAGNNNNNCTT 2 cut(s) 474, 506
FatI CATG 1 cut(s) 363
FauI CCCGC 1 cut(s) 888
FbaI TGATCA 1 cut(s) 700
FblI GTMKAC 1 cut(s) 816
Fnu4HI GCNGC 4 cut(s) 43, 185, 273, 426
FokI GGATG 2 cut(s) 357, 523
Fsp4HI GCNGC 4 cut(s) 43, 185, 273, 426
FspBI CTAG 4 cut(s) 570, 644, 779, 821
GluI GCNGC 4 cut(s) 43, 185, 273, 426
GsuI CTGGAG 1 cut(s) 606
HaeIII GGCC 2 cut(s) 102, 410
HgaI GACGC 2 cut(s) 65, 248
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 1 cut(s) 367
HincII GTYRAC 2 cut(s) 567, 817
HindII GTYRAC 2 cut(s) 567, 817
HindIII AAGCTT 1 cut(s) 809
HinfI GANTC 4 cut(s) 329, 656, 695, 835
HphI GGTGA 3 cut(s) 167, 209, 871
Hpy166II GTNNAC 5 cut(s) 67, 356, 567, 608, 817
Hpy188I TCNGA 5 cut(s) 138, 387, 406, 661, 700
Hpy8I GTNNAC 5 cut(s) 67, 356, 567, 608, 817
Hpy99I CGWCG 1 cut(s) 81
HpyAV CCTTC 6 cut(s) 21, 276, 299, 543, 551, 664
HpyCH4III ACNGT 1 cut(s) 769
HpyCH4IV ACGT 3 cut(s) 190, 631, 640
HpyCH4V TGCA 8 cut(s) 67, 187, 203, 272, 320, 370, 716, 869
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 73
HpyF3I CTNAG 4 cut(s) 378, 405, 507, 512
HpySE526I ACGT 3 cut(s) 190, 631, 640
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 1 cut(s) 367
Ksp22I TGATCA 1 cut(s) 700
Kzo9I GATC 3 cut(s) 115, 529, 700
LmnI GCTCC 2 cut(s) 422, 745
Lsp1109I GCAGC 4 cut(s) 54, 171, 284, 412
LweI GCATC 3 cut(s) 171, 379, 427
MaeI CTAG 4 cut(s) 570, 644, 779, 821
MaeII ACGT 3 cut(s) 190, 631, 640
MaeIII GTNAC 4 cut(s) 215, 673, 769, 859
MalI GATC 3 cut(s) 117, 531, 702
MboI GATC 3 cut(s) 115, 529, 700
MboII GAAGA 4 cut(s) 162, 237, 817, 844
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 6 cut(s) 128, 339, 663, 681, 734, 755
MlyI GAGTC 4 cut(s) 323, 665, 689, 829
MmeI TCCRAC 1 cut(s) 188
MseI TTAA 2 cut(s) 72, 737
MspA1I CMGCKG 2 cut(s) 45, 275
MspR9I CCNGG 1 cut(s) 624
MvaI CCWGG 1 cut(s) 624
MwoI GCNNNNNNNGC 2 cut(s) 48, 73
NcoI CCATGG 1 cut(s) 363
NdeII GATC 3 cut(s) 115, 529, 700
NlaIII CATG 1 cut(s) 367
NmuCI GTSAC 4 cut(s) 215, 673, 769, 859
PceI AGGCCT 1 cut(s) 410
PcsI WCGNNNNNNNCGW 1 cut(s) 637
PkrI GCNGC 4 cut(s) 44, 186, 274, 427
PleI GAGTC 4 cut(s) 323, 664, 689, 829
PpsI GAGTC 4 cut(s) 323, 664, 689, 829
Ppu21I YACGTR 1 cut(s) 632
Psp6I CCWGG 1 cut(s) 622
PspEI GGTNACC 2 cut(s) 215, 859
PspGI CCWGG 1 cut(s) 622
PspPI GGNCC 2 cut(s) 101, 353
PstI CTGCAG 2 cut(s) 274, 871
PstNI CAGNNNCTG 1 cut(s) 659
SalI GTCGAC 1 cut(s) 815
SaqAI TTAA 2 cut(s) 72, 737
SatI GCNGC 4 cut(s) 43, 185, 273, 426
Sau3AI GATC 3 cut(s) 115, 529, 700
Sau96I GGNCC 2 cut(s) 101, 353
SchI GAGTC 4 cut(s) 323, 665, 689, 829
ScrFI CCNGG 1 cut(s) 624
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 3 cut(s) 171, 379, 427
SfcI CTRYAG 4 cut(s) 270, 348, 797, 867
SinI GGWCC 1 cut(s) 353
SmlI CTYRAG 2 cut(s) 281, 875
SmoI CTYRAG 2 cut(s) 281, 875
SpeI ACTAGT 1 cut(s) 569
Sse9I AATT 6 cut(s) 128, 339, 663, 681, 734, 755
SseBI AGGCCT 1 cut(s) 410
SsiI CCGC 4 cut(s) 45, 275, 895, 916
SspMI CTAG 4 cut(s) 570, 644, 779, 821
StuI AGGCCT 1 cut(s) 410
StyD4I CCNGG 1 cut(s) 622
StyI CCWWGG 2 cut(s) 97, 363
TaaI ACNGT 1 cut(s) 769
TaiI ACGT 3 cut(s) 193, 634, 643
TaqI TCGA 2 cut(s) 79, 816
TasI AATT 6 cut(s) 128, 339, 663, 681, 734, 755
Tru1I TTAA 2 cut(s) 72, 737
Tru9I TTAA 2 cut(s) 72, 737
TscAI CASTG 2 cut(s) 774, 871
TseFI GTSAC 4 cut(s) 215, 673, 769, 859
TseI GCWGC 4 cut(s) 42, 184, 272, 425
Tsp45I GTSAC 4 cut(s) 215, 673, 769, 859
TspDTI ATGAA 2 cut(s) 338, 525
TspGWI ACGGA 2 cut(s) 317, 529
TspRI CASTG 2 cut(s) 774, 871
VneI GTGCAC 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 353
XapI RAATTY 1 cut(s) 128
XmiI GTMKAC 1 cut(s) 816
XspI CTAG 4 cut(s) 570, 644, 779, 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.