pycom07g10920

spliceosomal complex assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000179
Physical Location & Seq
Reverse (-)
11299686 .. 11300489
804 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g10920.1

Sequence Viewer

Length: 804 bp
ATGCTATTTGGAGGCGACCTACCCACAGGCGAGGAGATTGGGGATCCACCTGGTACAGAGCTTATCCCAAGTTCGTCAAGTTTCCCAAGTTTGCCGTGTGTAGGTGGAGGCATGCAAGATCCCGTCATGCATTCTACACCTTTGCCAGCTAGCTCTGAGATCTCTCTGAGAGGGCCAAACCTTAGTGGTACTGAGCAGCTTATTCATCGCATCAATCTTCGTGCGGCAATGGATATCAAGAGCCATATTGAGGGGAGGATTTTGAAATGCCCGTCGGAGGACCTTGCGTTGCTTAAAGAGGACTTGTCGAAACTTATTTCTGCAATTGACAATCTTAACATTGATTCTTCATCCTTGAAGATCAAGATCGCCGAAATTATGGCCGCCTCAACTGAGTATTCTTCCTTGCGTGTTATTTCCTCGAAGAAGTTGAGTCCAGATGTTAGAGCTCACCAACTTGCTGCAATAGACTTGTCACTAACCCAAGCCCGGTCTTCTCAGCAAGCTGCTTCGGGAGATTATCAATCTACAGAGACTTCTTTAGCTTCTGTCCGGGTACATCTAGATACGTTGATGCGAGAACAAGAACAGCTTGGCATCGAGGCATCAAAACTTGAAAGTGTTCTCGGGGAGCAGGGAGCTACACTTTCTCAATGCCAAGAGGAGATTTCACGCCTAGAACAAGAGAAAGACATGGCTATGGAGTTGCCCATCCTGTCTCTCACTGAGGTAGAGACTTTGAAGGCTTTGGAAGGCTTGCTTGAAGACCGCCTCCTTAGTTTTAGGGACATAGTTTTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

268

Amino Acids

28.91

Weight (kDa)

4.73

Isoelectric Point (pI)

57.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 224, 384, 769
AclWI GGATC 3 cut(s) 38, 51, 113
AcoI YGGCCR 1 cut(s) 381
AfaI GTAC 3 cut(s) 55, 190, 558
AfiI CCNNNNNNNGG 4 cut(s) 101, 250, 277, 489
AgsI TTSAA 6 cut(s) 265, 358, 617, 742, 764, 799
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 9 cut(s) 61, 149, 153, 199, 449, 506, 545, 592, 641
AluI AGCT 9 cut(s) 61, 149, 153, 199, 449, 506, 545, 592, 641
Alw21I GWGCWC 1 cut(s) 451
Alw26I GTCTC 3 cut(s) 527, 723, 728
AlwI GGATC 3 cut(s) 38, 51, 113
Ama87I CYCGRG 1 cut(s) 626
AoxI GGCC 2 cut(s) 173, 381
ApeKI GCWGC 3 cut(s) 196, 461, 506
Asp700I GAANNNNTTC 1 cut(s) 621
AspS9I GGNCC 2 cut(s) 173, 280
AsuC2I CCSGG 2 cut(s) 490, 554
AsuHPI GGTGA 1 cut(s) 443
AsuNHI GCTAGC 1 cut(s) 149
AvaI CYCGRG 1 cut(s) 626
AvaII GGWCC 1 cut(s) 280
BamHI GGATCC 1 cut(s) 43
BanII GRGCYC 1 cut(s) 451
BbsI GAAGAC 2 cut(s) 486, 771
Bbv12I GWGCWC 1 cut(s) 451
BbvI GCAGC 3 cut(s) 208, 448, 493
BccI CCATC 1 cut(s) 719
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 51
BcnI CCSGG 2 cut(s) 490, 554
BcoDI GTCTC 3 cut(s) 527, 723, 728
BfaI CTAG 3 cut(s) 150, 563, 677
BfmI CTRYAG 1 cut(s) 528
BglII AGATCT 1 cut(s) 159
BisI GCNGC 5 cut(s) 197, 225, 384, 462, 507
BlsI GCNGC 5 cut(s) 198, 226, 385, 463, 508
Bme1390I CCNGG 3 cut(s) 51, 490, 554
Bme18I GGWCC 1 cut(s) 280
BmeT110I CYCGRG 1 cut(s) 626
BmgT120I GGNCC 2 cut(s) 173, 280
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 3 cut(s) 51, 490, 554
BmsI GCATC 4 cut(s) 219, 564, 606, 614
BmtI GCTAGC 1 cut(s) 153
BpiI GAAGAC 2 cut(s) 486, 771
BpuMI CCSGG 2 cut(s) 490, 554
BsaBI GATNNNNATC 1 cut(s) 365
Bsc4I CCNNNNNNNGG 4 cut(s) 101, 250, 277, 489
Bse3DI GCAATG 1 cut(s) 234
Bse8I GATNNNNATC 1 cut(s) 365
BseBI CCWGG 1 cut(s) 51
BseGI GGATG 2 cut(s) 350, 711
BseJI GATNNNNATC 1 cut(s) 365
BseLI CCNNNNNNNGG 4 cut(s) 101, 250, 277, 489
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 6 cut(s) 147, 158, 183, 384, 512, 717
BseRI GAGGAG 2 cut(s) 47, 677
BseXI GCAGC 3 cut(s) 208, 448, 493
BshFI GGCC 2 cut(s) 175, 383
BsiHKAI GWGCWC 1 cut(s) 451
BsiHKCI CYCGRG 1 cut(s) 626
BsiSI CCGG 2 cut(s) 490, 553
BslFI GGGAC 1 cut(s) 800
BslI CCNNNNNNNGG 4 cut(s) 101, 250, 277, 489
BsmAI GTCTC 3 cut(s) 527, 723, 728
BsmFI GGGAC 1 cut(s) 800
BsmI GAATGC 1 cut(s) 130
BsnI GGCC 2 cut(s) 175, 383
BsoBI CYCGRG 1 cut(s) 626
Bsp1286I GDGCHC 1 cut(s) 451
Bsp143I GATC 5 cut(s) 43, 118, 159, 360, 366
BspACI CCGC 3 cut(s) 224, 384, 769
BspANI GGCC 2 cut(s) 175, 383
BspCNI CTCAG 6 cut(s) 148, 159, 184, 385, 511, 718
BspLI GGNNCC 1 cut(s) 45
BspOI GCTAGC 1 cut(s) 153
BspPI GGATC 3 cut(s) 38, 51, 113
BsrDI GCAATG 1 cut(s) 234
BssMI GATC 5 cut(s) 43, 118, 159, 360, 366
Bst2UI CCWGG 1 cut(s) 51
BstC8I GCNNGC 5 cut(s) 113, 147, 151, 504, 758
BstDEI CTNAG 8 cut(s) 156, 167, 182, 192, 393, 498, 726, 776
BstF5I GGATG 2 cut(s) 350, 711
BstKTI GATC 5 cut(s) 46, 121, 162, 363, 369
BstMAI GTCTC 3 cut(s) 527, 723, 728
BstMBI GATC 5 cut(s) 43, 118, 159, 360, 366
BstNI CCWGG 1 cut(s) 51
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 3 cut(s) 49, 488, 552
BstSFI CTRYAG 1 cut(s) 528
BstV1I GCAGC 3 cut(s) 208, 448, 493
BstV2I GAAGAC 2 cut(s) 486, 771
BstX2I RGATCY 3 cut(s) 43, 118, 159
BstYI RGATCY 3 cut(s) 43, 118, 159
BsuRI GGCC 2 cut(s) 175, 383
BtgZI GCGATG 1 cut(s) 191
BtsCI GGATG 2 cut(s) 350, 711
BtsIMutI CAGTG 1 cut(s) 723
Cac8I GCNNGC 5 cut(s) 113, 147, 151, 504, 758
Cfr13I GGNCC 2 cut(s) 173, 280
CsiI ACCWGGT 1 cut(s) 49
Csp6I GTAC 3 cut(s) 54, 189, 557
CviAII CATG 3 cut(s) 112, 127, 694
CviQI GTAC 3 cut(s) 54, 189, 557
DdeI CTNAG 8 cut(s) 156, 167, 182, 192, 393, 498, 726, 776
DpnI GATC 5 cut(s) 45, 120, 161, 362, 368
DpnII GATC 5 cut(s) 43, 118, 159, 360, 366
EaeI YGGCCR 1 cut(s) 381
Ecl136II GAGCTC 1 cut(s) 449
Eco24I GRGCYC 1 cut(s) 451
Eco32I GATATC 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 280
Eco53kI GAGCTC 1 cut(s) 449
Eco88I CYCGRG 1 cut(s) 626
EcoICRI GAGCTC 1 cut(s) 449
EcoO109I RGGNCCY 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 49
EcoRV GATATC 1 cut(s) 235
EcoT22I ATGCAT 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 451
FaeI CATG 3 cut(s) 115, 130, 697
FaiI YATR 7 cut(s) 113, 128, 246, 380, 695, 701, 791
FalI AAGNNNNNCTT 4 cut(s) 576, 608, 744, 776
FaqI GGGAC 1 cut(s) 800
FatI CATG 3 cut(s) 111, 126, 693
Fnu4HI GCNGC 5 cut(s) 197, 225, 384, 462, 507
FokI GGATG 2 cut(s) 337, 698
FriOI GRGCYC 1 cut(s) 451
Fsp4HI GCNGC 5 cut(s) 197, 225, 384, 462, 507
FspBI CTAG 3 cut(s) 150, 563, 677
GluI GCNGC 5 cut(s) 197, 225, 384, 462, 507
HaeIII GGCC 2 cut(s) 175, 383
HapII CCGG 2 cut(s) 490, 553
Hin1II CATG 3 cut(s) 115, 130, 697
HinfI GANTC 2 cut(s) 344, 433
HpaII CCGG 2 cut(s) 490, 553
HphI GGTGA 1 cut(s) 443
Hpy188I TCNGA 3 cut(s) 157, 168, 277
Hpy188III TCNNGA 5 cut(s) 238, 364, 437, 513, 563
Hpy99I CGWCG 1 cut(s) 277
HpyAV CCTTC 2 cut(s) 736, 746
HpyCH4IV ACGT 1 cut(s) 569
HpyCH4V TGCA 4 cut(s) 115, 130, 323, 464
HpyF3I CTNAG 8 cut(s) 156, 167, 182, 192, 393, 498, 726, 776
HpySE526I ACGT 1 cut(s) 569
Hsp92II CATG 3 cut(s) 115, 130, 697
Kzo9I GATC 5 cut(s) 43, 118, 159, 360, 366
LmnI GCTCC 2 cut(s) 631, 638
LpnPI CCDG 9 cut(s) 12, 36, 63, 159, 450, 503, 566, 620, 728
Lsp1109I GCAGC 3 cut(s) 208, 448, 493
LweI GCATC 4 cut(s) 219, 564, 606, 614
MabI ACCWGGT 1 cut(s) 49
MaeI CTAG 3 cut(s) 150, 563, 677
MaeII ACGT 1 cut(s) 569
MaeIII GTNAC 1 cut(s) 474
MalI GATC 5 cut(s) 45, 120, 161, 362, 368
MboI GATC 5 cut(s) 43, 118, 159, 360, 366
MboII GAAGA 7 cut(s) 209, 339, 370, 393, 436, 486, 776
MfeI CAATTG 1 cut(s) 324
MflI RGATCY 3 cut(s) 43, 118, 159
MhlI GDGCHC 1 cut(s) 451
MluCI AATT 2 cut(s) 324, 375
MlyI GAGTC 1 cut(s) 442
MmeI TCCRAC 1 cut(s) 255
Mph1103I ATGCAT 1 cut(s) 132
MroXI GAANNNNTTC 1 cut(s) 621
MseI TTAA 2 cut(s) 294, 336
MslI CAYNNNNRTG 1 cut(s) 698
MspI CCGG 2 cut(s) 490, 553
MspR9I CCNGG 3 cut(s) 51, 490, 554
MunI CAATTG 1 cut(s) 324
Mva1269I GAATGC 1 cut(s) 130
MvaI CCWGG 1 cut(s) 51
NciI CCSGG 2 cut(s) 490, 554
NdeII GATC 5 cut(s) 43, 118, 159, 360, 366
NheI GCTAGC 1 cut(s) 149
NlaIII CATG 3 cut(s) 115, 130, 697
NlaIV GGNNCC 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 474
NsiI ATGCAT 1 cut(s) 132
NspI RCATGY 1 cut(s) 115
PaeI GCATGC 1 cut(s) 115
PctI GAATGC 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 1 cut(s) 344
PkrI GCNGC 5 cut(s) 198, 226, 385, 463, 508
PleI GAGTC 1 cut(s) 441
PpsI GAGTC 1 cut(s) 441
PpuMI RGGWCCY 1 cut(s) 280
Psp124BI GAGCTC 1 cut(s) 451
Psp5II RGGWCCY 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 2 cut(s) 173, 280
PspPPI RGGWCCY 1 cut(s) 280
PsuI RGATCY 3 cut(s) 43, 118, 159
RsaI GTAC 3 cut(s) 55, 190, 558
RsaNI GTAC 3 cut(s) 54, 189, 557
RseI CAYNNNNRTG 1 cut(s) 698
SacI GAGCTC 1 cut(s) 451
SaqAI TTAA 2 cut(s) 294, 336
SatI GCNGC 5 cut(s) 197, 225, 384, 462, 507
Sau3AI GATC 5 cut(s) 43, 118, 159, 360, 366
Sau96I GGNCC 2 cut(s) 173, 280
SchI GAGTC 1 cut(s) 442
ScrFI CCNGG 3 cut(s) 51, 490, 554
SduI GDGCHC 1 cut(s) 451
SexAI ACCWGGT 1 cut(s) 49
SfaNI GCATC 4 cut(s) 219, 564, 606, 614
SfcI CTRYAG 1 cut(s) 528
SinI GGWCC 1 cut(s) 280
SmiMI CAYNNNNRTG 1 cut(s) 698
SphI GCATGC 1 cut(s) 115
Sse9I AATT 2 cut(s) 324, 375
SsiI CCGC 3 cut(s) 224, 384, 769
SspMI CTAG 3 cut(s) 150, 563, 677
SstI GAGCTC 1 cut(s) 451
StyD4I CCNGG 3 cut(s) 49, 488, 552
TaiI ACGT 1 cut(s) 572
TaqI TCGA 3 cut(s) 308, 422, 600
TasI AATT 2 cut(s) 324, 375
TauI GCSGC 2 cut(s) 227, 386
TfiI GAWTC 1 cut(s) 344
Tru1I TTAA 2 cut(s) 294, 336
Tru9I TTAA 2 cut(s) 294, 336
TscAI CASTG 1 cut(s) 730
TseFI GTSAC 1 cut(s) 474
TseI GCWGC 3 cut(s) 196, 461, 506
Tsp45I GTSAC 1 cut(s) 474
TspDTI ATGAA 2 cut(s) 194, 339
TspRI CASTG 1 cut(s) 730
VpaK11BI GGWCC 1 cut(s) 280
XbaI TCTAGA 1 cut(s) 562
XceI RCATGY 1 cut(s) 115
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 3 cut(s) 150, 563, 677
Zsp2I ATGCAT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.