Rroxscaffold_1G00033030

Galactose oxidase, central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000179
Physical Location & Seq
Reverse (-)
47459413 .. 47462079
2667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00033030.1

Sequence Viewer

Length: 945 bp
ATGGTGGACGATCGTGGATCGTTGGGCTGCTTTGAAGACGCAGCGGGATTAGAGGTTAGAAGAATCGGAAGCAGTGATCGAGTGGATCGAGTGCTGATGGATTTAGACGGTGATGGCGACCGTCGTGCTCATCCGGTCGACTTTCTAGAAGATGATGGAGACTCTTTAGATTCTCACATAGCTTTGGTCCATCCACCTAAGCTGAAAAGACCAGAATCCAAGAAAGAAGGCGTAGTGGGAGCAGCGGAAGCAATAATAGGTGCAGAGATTGATGGTCATCTACTTTGGGGAAACGATGACGCCTCTTCGGACCTATACATGTTCCTTTTACAACGGAACTTGAGGCTTACTCTTTACCCGCGAAAGGAACATCCAATGCAAAGAATGACTCACAGCAAGTTGACCCTACAGGTGCATCCTCCTAAGCCTCCGAACACCGTAGCCTTTTCCGAGGCTTCTCTTGGTGGAGCTGCTGTTATAGATGCTAGTCAAAGACTTCGTGATATCCGACAACAAGCTGCTACCGCAGTTTGTGAACAGATTGAGGATATGATAATGAAGCATTCCTCAAAGACCATTCTTTCCAGCAAGGAGGAACTTGACAAGGCGATAGCCGAGCTTAGCCATTATGGGATTGATCCTTCATCCGTAAGGGGCAAAGTTGAGGGATTGTTGACTAGCGCTGACCAATACAACTTGGCACGACTTGCTTGTTCACGCAAGGCTACTCGAGGCACAAGTAATCAACGTCCGGTTGACACCGAGTCGAAATTACAAAGGTTACTTCAATTCATCAAGCCGACTCGATCATCGCCAATCTACACTCAAGTCTTTGGAGAAATTAAAAGAGGAACAGCGAAGAGTGGAGAAAACAATGACTTTACTAGACAAGAGACTTCTACTACAAGAGAAGAAGCTTGTCGACCTAGAAAAAGAGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04212 ko05168 map04212 map05168
Pfam Domains
Protein Families
Kelch_3 Kelch_4 Kelch_5

Protein Analysis

314

Amino Acids

34.89

Weight (kDa)

6.34

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 138, 922
AccII CGCG 1 cut(s) 361
AciI CCGC 4 cut(s) 44, 245, 359, 525
AclWI GGATC 3 cut(s) 25, 93, 632
AcyI GRCGYC 1 cut(s) 300
AfeI AGCGCT 1 cut(s) 682
AfiI CCNNNNNNNGG 1 cut(s) 364
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 2 cut(s) 35, 788
AhdI GACNNNNNGTC 1 cut(s) 763
AluBI AGCT 6 cut(s) 182, 202, 470, 518, 619, 917
AluI AGCT 6 cut(s) 182, 202, 470, 518, 619, 917
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 2 cut(s) 153, 887
AlwI GGATC 3 cut(s) 25, 93, 632
Ama87I CYCGRG 1 cut(s) 729
Aor51HI AGCGCT 1 cut(s) 682
ApeKI GCWGC 5 cut(s) 27, 41, 242, 470, 518
AspLEI GCGC 1 cut(s) 683
AspS9I GGNCC 2 cut(s) 187, 310
AsuHPI GGTGA 1 cut(s) 122
AvaI CYCGRG 1 cut(s) 729
AvaII GGWCC 2 cut(s) 187, 310
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 5 cut(s) 14, 53, 254, 457, 505
BccI CCATC 5 cut(s) 91, 107, 149, 198, 266
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BcoDI GTCTC 2 cut(s) 153, 887
BfaI CTAG 5 cut(s) 146, 486, 678, 885, 927
BfmI CTRYAG 1 cut(s) 407
BfoI RGCGCY 1 cut(s) 684
BisI GCNGC 5 cut(s) 28, 42, 243, 471, 519
BlpI GCTNAGC 1 cut(s) 620
BlsI GCNGC 5 cut(s) 29, 43, 244, 472, 520
Bme18I GGWCC 2 cut(s) 187, 310
BmeRI GACNNNNNGTC 1 cut(s) 763
BmeT110I CYCGRG 1 cut(s) 729
BmgT120I GGNCC 2 cut(s) 187, 310
BmsI GCATC 2 cut(s) 424, 472
BpiI GAAGAC 1 cut(s) 42
BplI GAGNNNNNCTC 2 cut(s) 334, 366
Bpu10I CCTNAGC 2 cut(s) 198, 423
Bpu1102I GCTNAGC 1 cut(s) 620
BpuEI CTTGAG 2 cut(s) 361, 810
BsaBI GATNNNNATC 1 cut(s) 276
BsaHI GRCGYC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 450
BsaWI WCCGGW 2 cut(s) 133, 751
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse8I GATNNNNATC 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 450
BseGI GGATG 5 cut(s) 130, 190, 370, 415, 644
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 364
BseXI GCAGC 5 cut(s) 14, 53, 254, 457, 505
BsgI GTGCAG 1 cut(s) 282
Bsh1236I CGCG 1 cut(s) 361
Bsh1285I CGRYCG 3 cut(s) 13, 121, 138
BsiEI CGRYCG 3 cut(s) 13, 121, 138
BsiHKAI GWGCWC 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 729
BsiSI CCGG 2 cut(s) 134, 752
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 2 cut(s) 153, 887
BsmI GAATGC 1 cut(s) 562
BsoBI CYCGRG 1 cut(s) 729
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 6 cut(s) 10, 17, 76, 85, 637, 806
Bsp1720I GCTNAGC 1 cut(s) 620
BspACI CCGC 4 cut(s) 44, 245, 359, 525
BspFNI CGCG 1 cut(s) 361
BspPI GGATC 3 cut(s) 25, 93, 632
BssECI CCNNGG 1 cut(s) 450
BssMI GATC 6 cut(s) 10, 17, 76, 85, 637, 806
BssNI GRCGYC 1 cut(s) 300
Bst4CI ACNGT 3 cut(s) 110, 122, 439
Bst6I CTCTTC 2 cut(s) 310, 854
BstACI GRCGYC 1 cut(s) 300
BstAPI GCANNNNNTGC 1 cut(s) 707
BstDEI CTNAG 3 cut(s) 198, 423, 620
BstF5I GGATG 5 cut(s) 130, 190, 370, 415, 644
BstFNI CGCG 1 cut(s) 361
BstH2I RGCGCY 1 cut(s) 684
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 6 cut(s) 13, 20, 79, 88, 640, 809
BstMAI GTCTC 2 cut(s) 153, 887
BstMBI GATC 6 cut(s) 10, 17, 76, 85, 637, 806
BstMCI CGRYCG 3 cut(s) 13, 121, 138
BstMWI GCNNNNNNNGC 3 cut(s) 248, 524, 707
BstNSI RCATGY 1 cut(s) 322
BstSFI CTRYAG 1 cut(s) 407
BstUI CGCG 1 cut(s) 361
BstV1I GCAGC 5 cut(s) 14, 53, 254, 457, 505
BstV2I GAAGAC 1 cut(s) 42
BtgZI GCGATG 1 cut(s) 795
BtsCI GGATG 5 cut(s) 130, 190, 370, 415, 644
BtsI GCAGTG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 79
CfoI GCGC 1 cut(s) 683
Cfr13I GGNCC 2 cut(s) 187, 310
CseI GACGC 2 cut(s) 47, 308
CviAII CATG 1 cut(s) 319
DdeI CTNAG 3 cut(s) 198, 423, 620
DpnI GATC 6 cut(s) 12, 19, 78, 87, 639, 808
DpnII GATC 6 cut(s) 10, 17, 76, 85, 637, 806
DriI GACNNNNNGTC 1 cut(s) 763
Eam1104I CTCTTC 2 cut(s) 310, 854
Eam1105I GACNNNNNGTC 1 cut(s) 763
EarI CTCTTC 2 cut(s) 310, 854
Eco32I GATATC 1 cut(s) 505
Eco47I GGWCC 2 cut(s) 187, 310
Eco47III AGCGCT 1 cut(s) 682
Eco88I CYCGRG 1 cut(s) 729
EcoRV GATATC 1 cut(s) 505
FaeI CATG 1 cut(s) 322
FaiI YATR 6 cut(s) 179, 316, 320, 479, 551, 630
FatI CATG 1 cut(s) 318
FauI CCCGC 2 cut(s) 37, 366
FblI GTMKAC 2 cut(s) 138, 922
Fnu4HI GCNGC 5 cut(s) 28, 42, 243, 471, 519
FokI GGATG 5 cut(s) 117, 177, 357, 402, 631
Fsp4HI GCNGC 5 cut(s) 28, 42, 243, 471, 519
FspBI CTAG 5 cut(s) 146, 486, 678, 885, 927
GlaI GCGC 1 cut(s) 682
GluI GCNGC 5 cut(s) 28, 42, 243, 471, 519
HaeII RGCGCY 1 cut(s) 684
HapII CCGG 2 cut(s) 134, 752
HgaI GACGC 2 cut(s) 47, 308
HhaI GCGC 1 cut(s) 683
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 1 cut(s) 322
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HincII GTYRAC 5 cut(s) 139, 402, 675, 757, 923
HindII GTYRAC 5 cut(s) 139, 402, 675, 757, 923
HindIII AAGCTT 1 cut(s) 915
HinfI GANTC 7 cut(s) 63, 161, 170, 215, 388, 764, 802
HpaII CCGG 2 cut(s) 134, 752
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 8 cut(s) 7, 139, 402, 536, 675, 716, 757, 923
Hpy188I TCNGA 5 cut(s) 68, 310, 432, 451, 509
Hpy188III TCNNGA 2 cut(s) 146, 500
Hpy8I GTNNAC 8 cut(s) 7, 139, 402, 536, 675, 716, 757, 923
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 2 cut(s) 221, 651
HpyCH4III ACNGT 3 cut(s) 110, 122, 439
HpyCH4IV ACGT 1 cut(s) 748
HpyCH4V TGCA 3 cut(s) 263, 379, 415
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 524, 707
HpyF3I CTNAG 3 cut(s) 198, 423, 620
HpySE526I ACGT 1 cut(s) 748
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 1 cut(s) 322
HspAI GCGC 1 cut(s) 681
Kzo9I GATC 6 cut(s) 10, 17, 76, 85, 637, 806
LmnI GCTCC 2 cut(s) 239, 467
LpnPI CCDG 5 cut(s) 147, 225, 395, 598, 765
Lsp1109I GCAGC 5 cut(s) 14, 53, 254, 457, 505
LweI GCATC 2 cut(s) 424, 472
MaeI CTAG 5 cut(s) 146, 486, 678, 885, 927
MaeII ACGT 1 cut(s) 748
MaeIII GTNAC 1 cut(s) 780
MalI GATC 6 cut(s) 12, 19, 78, 87, 639, 808
MboI GATC 6 cut(s) 10, 17, 76, 85, 637, 806
MboII GAAGA 6 cut(s) 47, 72, 161, 297, 871, 923
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 3 cut(s) 770, 788, 840
MlyI GAGTC 4 cut(s) 155, 382, 773, 796
MmeI TCCRAC 1 cut(s) 532
MseI TTAA 1 cut(s) 843
MspA1I CMGCKG 2 cut(s) 44, 245
MspI CCGG 2 cut(s) 134, 752
Mva1269I GAATGC 1 cut(s) 562
MvnI CGCG 1 cut(s) 361
MwoI GCNNNNNNNGC 3 cut(s) 248, 524, 707
NdeII GATC 6 cut(s) 10, 17, 76, 85, 637, 806
NlaIII CATG 1 cut(s) 322
NmeAIII GCCGAG 1 cut(s) 640
NspI RCATGY 1 cut(s) 322
PaeR7I CTCGAG 1 cut(s) 729
PciI ACATGT 1 cut(s) 318
PcsI WCGNNNNNNNCGW 3 cut(s) 85, 114, 505
PctI GAATGC 1 cut(s) 562
PfeI GAWTC 3 cut(s) 63, 170, 215
PkrI GCNGC 5 cut(s) 29, 43, 244, 472, 520
Ple19I CGATCG 1 cut(s) 13
PleI GAGTC 4 cut(s) 155, 382, 772, 796
PpsI GAGTC 4 cut(s) 155, 382, 772, 796
PscI ACATGT 1 cut(s) 318
PspPI GGNCC 2 cut(s) 187, 310
PspXI VCTCGAGB 1 cut(s) 729
PvuI CGATCG 1 cut(s) 13
SalI GTCGAC 2 cut(s) 137, 921
SaqAI TTAA 1 cut(s) 843
SatI GCNGC 5 cut(s) 28, 42, 243, 471, 519
Sau3AI GATC 6 cut(s) 10, 17, 76, 85, 637, 806
Sau96I GGNCC 2 cut(s) 187, 310
SchI GAGTC 4 cut(s) 155, 382, 773, 796
SduI GDGCHC 1 cut(s) 130
SfaNI GCATC 2 cut(s) 424, 472
SfcI CTRYAG 1 cut(s) 407
Sfr274I CTCGAG 1 cut(s) 729
SinI GGWCC 2 cut(s) 187, 310
SlaI CTCGAG 1 cut(s) 729
SmlI CTYRAG 3 cut(s) 340, 729, 825
SmoI CTYRAG 3 cut(s) 340, 729, 825
Sse9I AATT 3 cut(s) 770, 788, 840
SsiI CCGC 4 cut(s) 44, 245, 359, 525
SspMI CTAG 5 cut(s) 146, 486, 678, 885, 927
TaaI ACNGT 3 cut(s) 110, 122, 439
TaiI ACGT 1 cut(s) 751
TaqI TCGA 7 cut(s) 79, 88, 138, 730, 767, 805, 922
TasI AATT 3 cut(s) 770, 788, 840
TfiI GAWTC 3 cut(s) 63, 170, 215
Tru1I TTAA 1 cut(s) 843
Tru9I TTAA 1 cut(s) 843
TscAI CASTG 1 cut(s) 79
TseI GCWGC 5 cut(s) 27, 41, 242, 470, 518
TspDTI ATGAA 3 cut(s) 572, 633, 781
TspGWI ACGGA 2 cut(s) 349, 637
TspRI CASTG 1 cut(s) 79
VpaK11BI GGWCC 2 cut(s) 187, 310
XbaI TCTAGA 1 cut(s) 145
XceI RCATGY 1 cut(s) 322
XhoI CTCGAG 1 cut(s) 729
XmiI GTMKAC 2 cut(s) 138, 922
XspI CTAG 5 cut(s) 146, 486, 678, 885, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.