Rmu_sc0003553.1_g000005

Galactose oxidase, central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003553.1
OG0000179
Physical Location & Seq
Reverse (-)
20222 .. 20779
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003553.1_g000005.1.cds

Sequence Viewer

Length: 558 bp
atggtgcatcctcctaagcctctgaacaccatagccttttctgaggcctctcttggtggagctactattatagatgccagccaaagacttcgtgatattcgtcaacaagctgctactgcaatttgtgaacaaattgaagatatgataatgaagcactcctccaagaccattttttccagcaagggggaacttgacaagctgatagctgagcttagccattatgggattgatccttcatccgtaaggggaaaagttgaaggattgttgactagggctgaccaatacaacctggcacgactttcttgttcacgcaaggctactccaggcacacgtattcaacgtctggctgacacagagtctgaaattgcgaaggtcacttcaattcgtcaagctgactctgatcatcgtcaatctgcactcaagtctttggagaaattaaaagaggtgcaacgaaaattggagcaaacagcataccataattcaaggaggccaatgagtatgctgtgcgcagatcactttgtgttgaaatgtcaccaagaaagtcagtatttagagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04212 ko05168 map04212 map05168
Pfam Domains
Protein Families
Kelch_3 Kelch_4 Kelch_5

Protein Analysis

185

Amino Acids

20.75

Weight (kDa)

8.9

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 508
AclWI GGATC 1 cut(s) 224
AdeI CACNNNGTG 1 cut(s) 520
AfiI CCNNNNNNNGG 1 cut(s) 183
AflIII ACRYGT 1 cut(s) 329
AgsI TTSAA 6 cut(s) 137, 257, 338, 381, 483, 526
AhdI GACNNNNNGTC 1 cut(s) 355
AjnI CCWGG 2 cut(s) 288, 322
AluBI AGCT 6 cut(s) 62, 110, 199, 206, 211, 392
AluI AGCT 6 cut(s) 62, 110, 199, 206, 211, 392
AlwI GGATC 1 cut(s) 224
AlwNI CAGNNNCTG 1 cut(s) 359
AoxI GGCC 2 cut(s) 45, 488
ApeKI GCWGC 1 cut(s) 110
AspLEI GCGC 1 cut(s) 509
AsuHPI GGTGA 1 cut(s) 524
BbvI GCAGC 1 cut(s) 97
BciT130I CCWGG 2 cut(s) 290, 324
BclI TGATCA 1 cut(s) 400
BfaI CTAG 1 cut(s) 270
BisI GCNGC 1 cut(s) 111
BlpI GCTNAGC 2 cut(s) 207, 212
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 2 cut(s) 290, 324
BmeRI GACNNNNNGTC 1 cut(s) 355
BmrFI CCNGG 2 cut(s) 290, 324
BmsI GCATC 2 cut(s) 16, 64
BpmI CTGGAG 1 cut(s) 306
Bpu10I CCTNAGC 1 cut(s) 15
Bpu1102I GCTNAGC 2 cut(s) 207, 212
BpuEI CTTGAG 1 cut(s) 404
BsaAI YACGTR 1 cut(s) 332
Bsc4I CCNNNNNNNGG 1 cut(s) 183
BseBI CCWGG 2 cut(s) 290, 324
BseGI GGATG 2 cut(s) 7, 236
BseLI CCNNNNNNNGG 1 cut(s) 183
BseMII CTCAG 2 cut(s) 33, 198
BseRI GAGGAG 1 cut(s) 148
BseXI GCAGC 1 cut(s) 97
BsgI GTGCAG 1 cut(s) 399
BshFI GGCC 2 cut(s) 47, 490
BslI CCNNNNNNNGG 1 cut(s) 183
BsnI GGCC 2 cut(s) 47, 490
Bsp143I GATC 3 cut(s) 229, 400, 511
Bsp1720I GCTNAGC 2 cut(s) 207, 212
BspANI GGCC 2 cut(s) 47, 490
BspCNI CTCAG 2 cut(s) 34, 199
BspPI GGATC 1 cut(s) 224
BssMI GATC 3 cut(s) 229, 400, 511
Bst2UI CCWGG 2 cut(s) 290, 324
BstBAI YACGTR 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 4 cut(s) 15, 42, 207, 212
BstF5I GGATG 2 cut(s) 7, 236
BstHHI GCGC 1 cut(s) 509
BstKTI GATC 3 cut(s) 232, 403, 514
BstMBI GATC 3 cut(s) 229, 400, 511
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNI CCWGG 2 cut(s) 290, 324
BstSCI CCNGG 2 cut(s) 288, 322
BstV1I GCAGC 1 cut(s) 97
BsuRI GGCC 2 cut(s) 47, 490
BtsCI GGATG 2 cut(s) 7, 236
Cac8I GCNNGC 1 cut(s) 79
CaiI CAGNNNCTG 1 cut(s) 359
CfoI GCGC 1 cut(s) 509
DdeI CTNAG 4 cut(s) 15, 42, 207, 212
DpnI GATC 3 cut(s) 231, 402, 513
DpnII GATC 3 cut(s) 229, 400, 511
DraIII CACNNNGTG 1 cut(s) 520
DriI GACNNNNNGTC 1 cut(s) 355
Eam1105I GACNNNNNGTC 1 cut(s) 355
Eco147I AGGCCT 1 cut(s) 47
EcoRII CCWGG 2 cut(s) 288, 322
FaiI YATR 7 cut(s) 32, 71, 143, 222, 472, 477, 500
FbaI TGATCA 1 cut(s) 400
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 223
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 270
FspI TGCGCA 1 cut(s) 508
GlaI GCGC 1 cut(s) 508
GluI GCNGC 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 306
HaeIII GGCC 2 cut(s) 47, 490
HhaI GCGC 1 cut(s) 509
Hin6I GCGC 1 cut(s) 507
HinP1I GCGC 1 cut(s) 507
HincII GTYRAC 2 cut(s) 104, 267
HindII GTYRAC 2 cut(s) 104, 267
HinfI GANTC 2 cut(s) 356, 395
HphI GGTGA 1 cut(s) 524
Hpy166II GTNNAC 4 cut(s) 104, 128, 267, 308
Hpy188I TCNGA 4 cut(s) 24, 43, 361, 400
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 4 cut(s) 104, 128, 267, 308
HpyAV CCTTC 3 cut(s) 243, 251, 364
HpyCH4IV ACGT 2 cut(s) 331, 340
HpyCH4V TGCA 4 cut(s) 7, 119, 416, 448
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 4 cut(s) 15, 42, 207, 212
HpySE526I ACGT 2 cut(s) 331, 340
HspAI GCGC 1 cut(s) 507
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 3 cut(s) 229, 400, 511
LmnI GCTCC 2 cut(s) 59, 460
LpnPI CCDG 7 cut(s) 91, 190, 275, 302, 309, 329, 336
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 2 cut(s) 16, 64
MaeI CTAG 1 cut(s) 270
MaeII ACGT 2 cut(s) 331, 340
MaeIII GTNAC 2 cut(s) 373, 530
MalI GATC 3 cut(s) 231, 402, 513
MboI GATC 3 cut(s) 229, 400, 511
MboII GAAGA 1 cut(s) 149
MluCI AATT 7 cut(s) 120, 132, 363, 381, 434, 455, 478
MlyI GAGTC 2 cut(s) 365, 389
MnlI CCTC 7 cut(s) 21, 30, 37, 58, 169, 436, 480
MseI TTAA 1 cut(s) 437
MspR9I CCNGG 2 cut(s) 290, 324
MvaI CCWGG 2 cut(s) 290, 324
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeII GATC 3 cut(s) 229, 400, 511
NmuCI GTSAC 2 cut(s) 373, 530
NsbI TGCGCA 1 cut(s) 508
PceI AGGCCT 1 cut(s) 47
PcsI WCGNNNNNNNCGW 2 cut(s) 97, 337
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 2 cut(s) 364, 389
PpsI GAGTC 2 cut(s) 364, 389
Ppu21I YACGTR 1 cut(s) 332
Psp6I CCWGG 2 cut(s) 288, 322
PspGI CCWGG 2 cut(s) 288, 322
PstNI CAGNNNCTG 1 cut(s) 359
SaqAI TTAA 1 cut(s) 437
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 3 cut(s) 229, 400, 511
SchI GAGTC 2 cut(s) 365, 389
ScrFI CCNGG 2 cut(s) 290, 324
SfaNI GCATC 2 cut(s) 16, 64
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 7 cut(s) 120, 132, 363, 381, 434, 455, 478
SseBI AGGCCT 1 cut(s) 47
SspMI CTAG 1 cut(s) 270
StuI AGGCCT 1 cut(s) 47
StyD4I CCNGG 2 cut(s) 288, 322
TaiI ACGT 2 cut(s) 334, 343
TasI AATT 7 cut(s) 120, 132, 363, 381, 434, 455, 478
Tru1I TTAA 1 cut(s) 437
Tru9I TTAA 1 cut(s) 437
TseFI GTSAC 2 cut(s) 373, 530
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 2 cut(s) 373, 530
TspDTI ATGAA 2 cut(s) 164, 225
TspGWI ACGGA 1 cut(s) 229
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.