Rmu_sc0001946.1_g000002

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001946.1
OG0000179
Physical Location & Seq
Reverse (-)
6672 .. 10402
3731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001946.1_g000002.1.cds

Sequence Viewer

Length: 1995 bp
atggccggagtcgtaggaaaagtcagaaattgccggaaaagcttcaagcttccaagctcgaatctctctccatggtccgtgcatggacgatccgtggccagaggtgcgccggcgtcgtcaagaagaagcgaatgccagtggtccgccgccgtgatatggccggaatcgaaagttccggttgggtcttccatacgaccttggttctggaacgaccttggttctggacttctccatgcttctggaacgaccttggtcgttgaactgtgcggagggatatttatccccaaaactcagtttaatccgagggctgagattaaacgaattgtggtgacaattggagacccccagttctgctttctttatttactgctaatttattgccttggactccgcgagttattaaagcatagaggaactgagggtccactgaaagcggttaggcttcgcgtgtttggcggctcacggagagaagaacgcggacgtcctaaacgcttggattcctccacatttggtccactgaaagcggttaggcttcgcgtgtttggcggctcacagagagaagaacgcggacgtcctaaacgcttggattcctccacctttgtgcgcggcacttgcgatcgcattttccgtccttttgtggccatggccttcttcaaatgcttcaagaaagggacagtcaccatcctcgaggatccggaggacgctcaaagtgatggaactactctgcaagtgcacccatcgttgactgggcctcaagcaatcaatgtccctccttatgacccttcaactcaccccccccagtggacttatgtggtacctcgccagctagctatgtttcgacgaccgagatctggaagagaccaaccaaactcgcatgtactgttgctgaagtcttcgcatcatgatcagaacactcctcagtccccattcaagcttctcagtgatcgtgtacgcaacgagttctactgggaatgggtagaagatatcttaagcatgaatggcaagcttactcaggaggccggtctctatcgagcgataatcgcctcactattcagctatgaccgtgtttcatctgtcatacgggctttctgcgagtactggtgccccacaacgaataccctacatacttctagcggggagatgtccatctccctctgggatttggaccaactcggaggtttgcccattactggacggttttatgatgaggtggttccagctgctaaagagcttactgtagcaagcaaagggagtcaacagagctgccgctatttttttctcgcctaccataagctttgcaaagaaggccaagggcagaaagtgaagataacttcatggatacgatattggatccatgagatccgacaatgtacttctgcagacctcgcagtatttgatgacttaggcattgagagtgaagatgtagagcccacctatttggctgcctttcttgcttgttggttgtgtctgtttgttttacccagagacgacactgagtactttggcacccactttcagtctccgcttcccaacgacctaaggcccagtatggttcgcttctccggagaatttttagctaaatattgtggggactcacaggcgctttctttattcaatgcatgtgataatgtgaggatggatgcatttgccagggtattttcggagagcagagtgattatcaaccgcgagaacatctcccatttagacctcatatatctcatcagccttcgatctgggtatctttctctcagacaggataacctacgagtcattcagccatacagtccacaccggtttagtcgacagtttggttatgtccaagacattcctggcaaccttaagaatgacattcgtaccggcgtgtgggctttgatttacaagcattgggattcctgcaccagaatgaacaccaagtgtgtggtaatgttgccgatccagagtgctatcatagagtacatggttactcgagactatgtcgactggtggaggatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

664

Amino Acids

75.75

Weight (kDa)

9.25

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 484, 574
AbsI CCTCGAGG 1 cut(s) 686
Acc65I GGTACC 1 cut(s) 814
AccB1I GGYRCC 3 cut(s) 814, 1101, 1505
AccI GTMKAC 2 cut(s) 1801, 1977
AccII CGCG 7 cut(s) 393, 447, 477, 537, 567, 606, 1686
AccIII TCCGGA 2 cut(s) 694, 1562
AclWI GGATC 7 cut(s) 84, 686, 699, 1345, 1354, 1358, 1927
AcoI YGGCCR 4 cut(s) 3, 96, 158, 639
AcsI RAATTY 1 cut(s) 1568
AcuI CTGAAG 1 cut(s) 908
AcyI GRCGYC 3 cut(s) 113, 481, 571
AdeI CACNNNGTG 1 cut(s) 1914
AfaI GTAC 8 cut(s) 816, 879, 951, 1097, 1372, 1499, 1855, 1955
AfiI CCNNNNNNNGG 5 cut(s) 156, 801, 851, 1190, 1863
AflII CTTAAG 2 cut(s) 988, 1838
AgeI ACCGGT 1 cut(s) 1791
AgsI TTSAA 7 cut(s) 46, 260, 655, 664, 786, 931, 1615
AjnI CCWGG 2 cut(s) 1649, 1828
AleI CACNNNNGTG 1 cut(s) 599
AloI GAACNNNNNNTCC 2 cut(s) 406, 438
Alw21I GWGCWC 1 cut(s) 735
Alw26I GTCTC 6 cut(s) 333, 852, 1028, 1479, 1524, 1962
Alw44I GTGCAC 1 cut(s) 731
AlwI GGATC 7 cut(s) 84, 686, 699, 1345, 1354, 1358, 1927
Ama87I CYCGRG 2 cut(s) 686, 1965
Aor13HI TCCGGA 2 cut(s) 694, 1562
AoxI GGCC 9 cut(s) 3, 96, 158, 639, 645, 749, 1017, 1306, 1541
ApaLI GTGCAC 1 cut(s) 731
ApeKI GCWGC 3 cut(s) 1220, 1263, 1442
ApoI RAATTY 1 cut(s) 1568
AsiGI ACCGGT 1 cut(s) 1791
AsiSI GCGATCGC 1 cut(s) 619
Asp700I GAANNNNTTC 1 cut(s) 41
Asp718I GGTACC 1 cut(s) 814
AspLEI GCGC 3 cut(s) 109, 606, 1603
AspS9I GGNCC 7 cut(s) 75, 141, 422, 512, 749, 1165, 1542
AsuHPI GGTGA 3 cut(s) 340, 670, 782
AsuNHI GCTAGC 1 cut(s) 826
AvaI CYCGRG 2 cut(s) 686, 1965
AvaII GGWCC 5 cut(s) 75, 141, 422, 512, 1165
AxyI CCTNAGG 1 cut(s) 1538
BaeGI GKGCMC 2 cut(s) 735, 1106
BaeI ACNNNNGTAYC 2 cut(s) 1837, 1870
BalI TGGCCA 2 cut(s) 98, 641
BamHI GGATCC 2 cut(s) 691, 1350
BanI GGYRCC 3 cut(s) 814, 1101, 1505
BanII GRGCYC 1 cut(s) 1431
BbsI GAAGAC 2 cut(s) 177, 885
Bbv12I GWGCWC 1 cut(s) 735
BbvI GCAGC 3 cut(s) 1207, 1250, 1429
BccI CCATC 5 cut(s) 689, 707, 745, 1154, 1630
BceAI ACGGC 1 cut(s) 134
BciT130I CCWGG 2 cut(s) 1651, 1830
BciVI GTATCC 1 cut(s) 1332
BclI TGATCA 1 cut(s) 904
BcoDI GTCTC 6 cut(s) 333, 852, 1028, 1479, 1524, 1962
BfaI CTAG 2 cut(s) 827, 1131
BfmI CTRYAG 2 cut(s) 1236, 1377
BfoI RGCGCY 1 cut(s) 1604
BfrI CTTAAG 2 cut(s) 988, 1838
BfuI GTATCC 1 cut(s) 1332
BglII AGATCT 1 cut(s) 848
BisI GCNGC 8 cut(s) 147, 457, 547, 607, 1221, 1264, 1267, 1443
BlsI GCNGC 8 cut(s) 148, 458, 548, 608, 1222, 1265, 1268, 1444
BmcAI AGTACT 2 cut(s) 1097, 1499
Bme1390I CCNGG 2 cut(s) 1651, 1830
Bme18I GGWCC 5 cut(s) 75, 141, 422, 512, 1165
BmeT110I CYCGRG 2 cut(s) 686, 1965
BmgT120I GGNCC 7 cut(s) 75, 141, 422, 512, 749, 1165, 1542
BmiI GGNNCC 7 cut(s) 423, 693, 816, 1103, 1215, 1352, 1507
BmrFI CCNGG 2 cut(s) 1651, 1830
BmrI ACTGGG 5 cut(s) 340, 756, 793, 976, 1539
BmsI GCATC 2 cut(s) 907, 1630
BmtI GCTAGC 1 cut(s) 830
BmuI ACTGGG 5 cut(s) 340, 756, 793, 976, 1539
BoxI GACNNNNGTC 1 cut(s) 251
BpiI GAAGAC 2 cut(s) 177, 885
BplI GAGNNNNNCTC 2 cut(s) 1679, 1711
BpuEI CTTGAG 1 cut(s) 738
BsaBI GATNNNNATC 2 cut(s) 278, 1145
BsaHI GRCGYC 3 cut(s) 113, 481, 571
BsaI GGTCTC 3 cut(s) 333, 852, 1028
BsaWI WCCGGW 4 cut(s) 175, 694, 1562, 1791
Bsc4I CCNNNNNNNGG 5 cut(s) 156, 801, 851, 1190, 1863
Bse118I RCCGGY 4 cut(s) 109, 1019, 1791, 1856
Bse1I ACTGG 9 cut(s) 136, 346, 751, 799, 971, 1103, 1195, 1545, 1985
Bse21I CCTNAGG 1 cut(s) 1538
Bse8I GATNNNNATC 2 cut(s) 278, 1145
BseAI TCCGGA 2 cut(s) 694, 1562
BseBI CCWGG 2 cut(s) 1651, 1830
BseGI GGATG 3 cut(s) 681, 1641, 1645
BseJI GATNNNNATC 2 cut(s) 278, 1145
BseLI CCNNNNNNNGG 5 cut(s) 156, 801, 851, 1190, 1863
BseMII CTCAG 8 cut(s) 300, 305, 408, 932, 952, 1025, 1485, 1762
BseNI ACTGG 9 cut(s) 136, 346, 751, 799, 971, 1103, 1195, 1545, 1985
BseRI GAGGAG 1 cut(s) 906
BseSI GKGCMC 2 cut(s) 735, 1106
BseXI GCAGC 3 cut(s) 1207, 1250, 1429
BsgI GTGCAG 1 cut(s) 1879
Bsh1236I CGCG 7 cut(s) 393, 447, 477, 537, 567, 606, 1686
Bsh1285I CGRYCG 2 cut(s) 619, 845
BshFI GGCC 9 cut(s) 5, 98, 160, 641, 647, 751, 1019, 1308, 1543
BshNI GGYRCC 3 cut(s) 814, 1101, 1505
BshTI ACCGGT 1 cut(s) 1791
BsiEI CGRYCG 2 cut(s) 619, 845
BsiHKAI GWGCWC 1 cut(s) 735
BsiHKCI CYCGRG 2 cut(s) 686, 1965
BslFI GGGAC 4 cut(s) 685, 752, 907, 1604
BslI CCNNNNNNNGG 5 cut(s) 156, 801, 851, 1190, 1863
BsmAI GTCTC 6 cut(s) 333, 852, 1028, 1479, 1524, 1962
BsmBI CGTCTC 1 cut(s) 1479
BsmFI GGGAC 4 cut(s) 685, 752, 907, 1604
BsmI GAATGC 1 cut(s) 137
BsnI GGCC 9 cut(s) 5, 98, 160, 641, 647, 751, 1019, 1308, 1543
Bso31I GGTCTC 3 cut(s) 333, 852, 1028
BsoBI CYCGRG 2 cut(s) 686, 1965
Bsp1286I GDGCHC 3 cut(s) 735, 1106, 1431
Bsp13I TCCGGA 2 cut(s) 694, 1562
Bsp19I CCATGG 2 cut(s) 71, 642
BspANI GGCC 9 cut(s) 5, 98, 160, 641, 647, 751, 1019, 1308, 1543
BspCNI CTCAG 8 cut(s) 301, 304, 409, 931, 951, 1024, 1486, 1761
BspEI TCCGGA 2 cut(s) 694, 1562
BspFNI CGCG 7 cut(s) 393, 447, 477, 537, 567, 606, 1686
BspHI TCATGA 1 cut(s) 901
BspLI GGNNCC 7 cut(s) 423, 693, 816, 1103, 1215, 1352, 1507
BspMAI CTGCAG 1 cut(s) 1381
BspOI GCTAGC 1 cut(s) 830
BspPI GGATC 7 cut(s) 84, 686, 699, 1345, 1354, 1358, 1927
BspT107I GGYRCC 3 cut(s) 814, 1101, 1505
BspTI CTTAAG 2 cut(s) 988, 1838
BspTNI GGTCTC 3 cut(s) 333, 852, 1028
BsrFI RCCGGY 4 cut(s) 109, 1019, 1791, 1856
BsrI ACTGG 9 cut(s) 136, 346, 751, 799, 971, 1103, 1195, 1545, 1985
BssAI RCCGGY 4 cut(s) 109, 1019, 1791, 1856
BssNI GRCGYC 3 cut(s) 113, 481, 571
BssT1I CCWWGG 7 cut(s) 71, 197, 214, 249, 382, 642, 1309
Bst2UI CCWGG 2 cut(s) 1651, 1830
Bst4CI ACNGT 8 cut(s) 264, 676, 882, 1064, 1197, 1237, 1784, 1806
Bst6I CTCTTC 1 cut(s) 850
BstACI GRCGYC 3 cut(s) 113, 481, 571
BstAFI CTTAAG 2 cut(s) 988, 1838
BstC8I GCNNGC 5 cut(s) 111, 824, 828, 1004, 1243
BstDSI CCRYGG 3 cut(s) 71, 93, 642
BstF5I GGATG 3 cut(s) 681, 1641, 1645
BstFNI CGCG 7 cut(s) 393, 447, 477, 537, 567, 606, 1686
BstH2I RGCGCY 1 cut(s) 1604
BstHHI GCGC 3 cut(s) 109, 606, 1603
BstMAI GTCTC 6 cut(s) 333, 852, 1028, 1479, 1524, 1962
BstMCI CGRYCG 2 cut(s) 619, 845
BstNI CCWGG 2 cut(s) 1651, 1830
BstNSI RCATGY 2 cut(s) 878, 1623
BstPAI GACNNNNGTC 1 cut(s) 251
BstSCI CCNGG 2 cut(s) 1649, 1828
BstSFI CTRYAG 2 cut(s) 1236, 1377
BstSLI GKGCMC 2 cut(s) 735, 1106
BstUI CGCG 7 cut(s) 393, 447, 477, 537, 567, 606, 1686
BstV1I GCAGC 3 cut(s) 1207, 1250, 1429
BstV2I GAAGAC 2 cut(s) 177, 885
BstX2I RGATCY 4 cut(s) 691, 848, 1350, 1359
BstXI CCANNNNNNTGG 3 cut(s) 239, 1438, 1918
BstYI RGATCY 4 cut(s) 691, 848, 1350, 1359
Bsu36I CCTNAGG 1 cut(s) 1538
BsuI GTATCC 1 cut(s) 1332
BsuRI GGCC 9 cut(s) 5, 98, 160, 641, 647, 751, 1019, 1308, 1543
BtgI CCRYGG 3 cut(s) 71, 93, 642
BtsCI GGATG 3 cut(s) 681, 1641, 1645
BtsIMutI CAGTG 6 cut(s) 143, 425, 515, 806, 946, 1491
Cac8I GCNNGC 5 cut(s) 111, 824, 828, 1004, 1243
CciI TCATGA 1 cut(s) 901
CfoI GCGC 3 cut(s) 109, 606, 1603
Cfr10I RCCGGY 4 cut(s) 109, 1019, 1791, 1856
Cfr13I GGNCC 7 cut(s) 75, 141, 422, 512, 749, 1165, 1542
CseI GACGC 2 cut(s) 102, 710
Csp6I GTAC 8 cut(s) 815, 878, 950, 1096, 1371, 1498, 1854, 1954
CspAI ACCGGT 1 cut(s) 1791
CviQI GTAC 8 cut(s) 815, 878, 950, 1096, 1371, 1498, 1854, 1954
DraIII CACNNNGTG 1 cut(s) 1914
EaeI YGGCCR 4 cut(s) 3, 96, 158, 639
Eam1104I CTCTTC 1 cut(s) 850
EarI CTCTTC 1 cut(s) 850
EciI GGCGGA 1 cut(s) 133
Eco130I CCWWGG 7 cut(s) 71, 197, 214, 249, 382, 642, 1309
Eco24I GRGCYC 1 cut(s) 1431
Eco31I GGTCTC 3 cut(s) 333, 852, 1028
Eco32I GATATC 1 cut(s) 985
Eco47I GGWCC 5 cut(s) 75, 141, 422, 512, 1165
Eco57I CTGAAG 1 cut(s) 908
Eco81I CCTNAGG 1 cut(s) 1538
Eco88I CYCGRG 2 cut(s) 686, 1965
EcoRII CCWGG 2 cut(s) 1649, 1828
EcoRV GATATC 1 cut(s) 985
EcoT14I CCWWGG 7 cut(s) 71, 197, 214, 249, 382, 642, 1309
EcoT22I ATGCAT 2 cut(s) 1621, 1645
EcoT38I GRGCYC 1 cut(s) 1431
ErhI CCWWGG 7 cut(s) 71, 197, 214, 249, 382, 642, 1309
Esp3I CGTCTC 1 cut(s) 1479
FaqI GGGAC 4 cut(s) 685, 752, 907, 1604
FauI CCCGC 1 cut(s) 1127
FbaI TGATCA 1 cut(s) 904
FblI GTMKAC 2 cut(s) 1801, 1977
Fnu4HI GCNGC 8 cut(s) 147, 457, 547, 607, 1221, 1264, 1267, 1443
FokI GGATG 3 cut(s) 668, 1648, 1652
FriOI GRGCYC 1 cut(s) 1431
Fsp4HI GCNGC 8 cut(s) 147, 457, 547, 607, 1221, 1264, 1267, 1443
FspBI CTAG 2 cut(s) 827, 1131
GlaI GCGC 3 cut(s) 108, 605, 1602
GluI GCNGC 8 cut(s) 147, 457, 547, 607, 1221, 1264, 1267, 1443
HaeII RGCGCY 1 cut(s) 1604
HaeIII GGCC 9 cut(s) 5, 98, 160, 641, 647, 751, 1019, 1308, 1543
HgaI GACGC 2 cut(s) 102, 710
HhaI GCGC 3 cut(s) 109, 606, 1603
Hin1I GRCGYC 3 cut(s) 113, 481, 571
Hin6I GCGC 3 cut(s) 107, 604, 1601
HinP1I GCGC 3 cut(s) 107, 604, 1601
HincII GTYRAC 4 cut(s) 744, 1256, 1802, 1978
HindII GTYRAC 4 cut(s) 744, 1256, 1802, 1978
HindIII AAGCTT 5 cut(s) 40, 47, 932, 1004, 1292
HphI GGTGA 3 cut(s) 340, 670, 782
Hpy188I TCNGA 7 cut(s) 26, 303, 909, 1175, 1364, 1663, 1751
Hpy99I CGWCG 2 cut(s) 118, 843
HpyAV CCTTC 4 cut(s) 658, 792, 1298, 1736
HpyCH4III ACNGT 8 cut(s) 264, 676, 882, 1064, 1197, 1237, 1784, 1806
HpyCH4IV ACGT 2 cut(s) 481, 571
HpyCH4V TGCA 8 cut(s) 82, 727, 733, 1299, 1379, 1619, 1643, 1896
HpySE526I ACGT 2 cut(s) 481, 571
Hsp92I GRCGYC 3 cut(s) 113, 481, 571
HspAI GCGC 3 cut(s) 107, 604, 1601
Kpn2I TCCGGA 2 cut(s) 694, 1562
KpnI GGTACC 1 cut(s) 818
KroI GCCGGC 1 cut(s) 109
KroNI GCCGGC 1 cut(s) 111
Ksp22I TGATCA 1 cut(s) 904
Lsp1109I GCAGC 3 cut(s) 1207, 1250, 1429
LweI GCATC 2 cut(s) 907, 1630
MaeI CTAG 2 cut(s) 827, 1131
MaeII ACGT 2 cut(s) 481, 571
MaeIII GTNAC 3 cut(s) 328, 676, 1960
MfeI CAATTG 1 cut(s) 333
MflI RGATCY 4 cut(s) 691, 848, 1350, 1359
MhlI GDGCHC 3 cut(s) 735, 1106, 1431
MlsI TGGCCA 2 cut(s) 98, 641
MluCI AATT 5 cut(s) 28, 321, 333, 372, 1568
MluNI TGGCCA 2 cut(s) 98, 641
MlyI GAGTC 5 cut(s) 18, 381, 1261, 1586, 1776
MmeI TCCRAC 1 cut(s) 1387
Mox20I TGGCCA 2 cut(s) 98, 641
Mph1103I ATGCAT 2 cut(s) 1621, 1645
MreI CGCCGGCG 1 cut(s) 109
MroI TCCGGA 2 cut(s) 694, 1562
MroNI GCCGGC 1 cut(s) 109
MroXI GAANNNNTTC 1 cut(s) 41
MscI TGGCCA 2 cut(s) 98, 641
MseI TTAA 5 cut(s) 297, 315, 401, 989, 1839
MslI CAYNNNNRTG 2 cut(s) 599, 1901
Msp20I TGGCCA 2 cut(s) 98, 641
MspA1I CMGCKG 1 cut(s) 1220
MspCI CTTAAG 2 cut(s) 988, 1838
MspR9I CCNGG 2 cut(s) 1651, 1830
MunI CAATTG 1 cut(s) 333
Mva1269I GAATGC 1 cut(s) 137
MvaI CCWGG 2 cut(s) 1651, 1830
MvnI CGCG 7 cut(s) 393, 447, 477, 537, 567, 606, 1686
NaeI GCCGGC 1 cut(s) 111
NcoI CCATGG 2 cut(s) 71, 642
NgoMIV GCCGGC 1 cut(s) 109
NheI GCTAGC 1 cut(s) 826
NlaIV GGNNCC 7 cut(s) 423, 693, 816, 1103, 1215, 1352, 1507
NmuCI GTSAC 2 cut(s) 328, 676
NsiI ATGCAT 2 cut(s) 1621, 1645
NspI RCATGY 2 cut(s) 878, 1623
OliI CACNNNNGTG 1 cut(s) 599
PaeR7I CTCGAG 2 cut(s) 686, 1965
PagI TCATGA 1 cut(s) 901
PcsI WCGNNNNNNNCGW 1 cut(s) 625
PctI GAATGC 1 cut(s) 137
PdiI GCCGGC 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 41
PfeI GAWTC 5 cut(s) 61, 164, 497, 587, 1889
PflFI GACNNNGTC 1 cut(s) 1973
PinAI ACCGGT 1 cut(s) 1791
PkrI GCNGC 8 cut(s) 148, 458, 548, 608, 1222, 1265, 1268, 1444
Ple19I CGATCG 1 cut(s) 619
PleI GAGTC 5 cut(s) 17, 381, 1260, 1586, 1775
PpsI GAGTC 5 cut(s) 17, 381, 1260, 1586, 1775
PshAI GACNNNNGTC 1 cut(s) 251
Psp6I CCWGG 2 cut(s) 1649, 1828
PspGI CCWGG 2 cut(s) 1649, 1828
PspN4I GGNNCC 7 cut(s) 423, 693, 816, 1103, 1215, 1352, 1507
PspPI GGNCC 7 cut(s) 75, 141, 422, 512, 749, 1165, 1542
PspXI VCTCGAGB 1 cut(s) 686
PstI CTGCAG 1 cut(s) 1381
PsuI RGATCY 4 cut(s) 691, 848, 1350, 1359
PsyI GACNNNGTC 1 cut(s) 1973
PvuI CGATCG 1 cut(s) 619
PvuII CAGCTG 1 cut(s) 1220
RgaI GCGATCGC 1 cut(s) 619
RsaI GTAC 8 cut(s) 816, 879, 951, 1097, 1372, 1499, 1855, 1955
RsaNI GTAC 8 cut(s) 815, 878, 950, 1096, 1371, 1498, 1854, 1954
RseI CAYNNNNRTG 2 cut(s) 599, 1901
SalI GTCGAC 2 cut(s) 1800, 1976
SaqAI TTAA 5 cut(s) 297, 315, 401, 989, 1839
SatI GCNGC 8 cut(s) 147, 457, 547, 607, 1221, 1264, 1267, 1443
Sau96I GGNCC 7 cut(s) 75, 141, 422, 512, 749, 1165, 1542
ScaI AGTACT 2 cut(s) 1097, 1499
SchI GAGTC 5 cut(s) 18, 381, 1261, 1586, 1776
ScrFI CCNGG 2 cut(s) 1651, 1830
SduI GDGCHC 3 cut(s) 735, 1106, 1431
SfaAI GCGATCGC 1 cut(s) 619
SfaNI GCATC 2 cut(s) 907, 1630
SfcI CTRYAG 2 cut(s) 1236, 1377
Sfr274I CTCGAG 2 cut(s) 686, 1965
SgfI GCGATCGC 1 cut(s) 619
SgrAI CRCCGGYG 1 cut(s) 109
SinI GGWCC 5 cut(s) 75, 141, 422, 512, 1165
SlaI CTCGAG 2 cut(s) 686, 1965
SmiMI CAYNNNNRTG 2 cut(s) 599, 1901
SmlI CTYRAG 5 cut(s) 686, 753, 988, 1838, 1965
SmoI CTYRAG 5 cut(s) 686, 753, 988, 1838, 1965
Sse9I AATT 5 cut(s) 28, 321, 333, 372, 1568
SspI AATATT 1 cut(s) 1583
SspMI CTAG 2 cut(s) 827, 1131
StyD4I CCNGG 2 cut(s) 1649, 1828
StyI CCWWGG 7 cut(s) 71, 197, 214, 249, 382, 642, 1309
TaaI ACNGT 8 cut(s) 264, 676, 882, 1064, 1197, 1237, 1784, 1806
TaiI ACGT 2 cut(s) 484, 574
TaqI TCGA 9 cut(s) 59, 167, 687, 838, 1030, 1729, 1801, 1966, 1977
TaqII GACCGA 1 cut(s) 859
TasI AATT 5 cut(s) 28, 321, 333, 372, 1568
TatI WGTACW 5 cut(s) 877, 1095, 1370, 1497, 1953
TauI GCSGC 5 cut(s) 149, 459, 549, 609, 1269
TfiI GAWTC 5 cut(s) 61, 164, 497, 587, 1889
Tru1I TTAA 5 cut(s) 297, 315, 401, 989, 1839
Tru9I TTAA 5 cut(s) 297, 315, 401, 989, 1839
TscAI CASTG 6 cut(s) 143, 432, 522, 806, 946, 1498
TseFI GTSAC 2 cut(s) 328, 676
TseI GCWGC 3 cut(s) 1220, 1263, 1442
Tsp45I GTSAC 2 cut(s) 328, 676
TspDTI ATGAA 4 cut(s) 1010, 1059, 1323, 1919
TspGWI ACGGA 4 cut(s) 67, 82, 478, 617
TspRI CASTG 6 cut(s) 143, 432, 522, 806, 946, 1498
Tth111I GACNNNGTC 1 cut(s) 1973
Vha464I CTTAAG 2 cut(s) 988, 1838
VneI GTGCAC 1 cut(s) 731
VpaK11BI GGWCC 5 cut(s) 75, 141, 422, 512, 1165
XapI RAATTY 1 cut(s) 1568
XceI RCATGY 2 cut(s) 878, 1623
XcmI CCANNNNNNNNNTGG 1 cut(s) 1826
XhoI CTCGAG 2 cut(s) 686, 1965
XmiI GTMKAC 2 cut(s) 1801, 1977
XmnI GAANNNNTTC 1 cut(s) 41
XspI CTAG 2 cut(s) 827, 1131
ZraI GACGTC 2 cut(s) 482, 572
ZrmI AGTACT 2 cut(s) 1097, 1499
Zsp2I ATGCAT 2 cut(s) 1621, 1645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.